Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31349 * 1 3 3 Si 1.86801 * 119.99634 * 2 1 4 4 H 1.48503 * 109.47267 * 89.99897 * 3 2 1 5 5 H 1.48499 * 109.47400 * 210.00115 * 3 2 1 6 6 H 1.48508 * 109.47265 * 330.00063 * 3 2 1 7 7 C 1.39007 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99824 * 155.23897 * 7 2 1 9 9 N 1.36893 * 119.99811 * 335.23484 * 7 2 1 10 10 C 1.38209 * 125.61475 * 147.67482 * 9 7 2 11 11 C 1.46886 * 125.44265 * 359.97438 * 10 9 7 12 12 O 1.21673 * 119.99918 * 353.98293 * 11 10 9 13 13 N 1.34774 * 120.00695 * 173.98417 * 11 10 9 14 14 C 1.47077 * 136.05187 * 4.82705 * 13 11 10 15 15 C 1.53242 * 88.07900 * 207.20850 * 14 13 11 16 16 C 1.52998 * 114.32296 * 220.47297 * 15 14 13 17 17 H 1.09003 * 110.46125 * 33.05767 * 16 15 14 18 18 C 1.54510 * 110.51007 * 155.66823 * 16 15 14 19 19 C 1.54482 * 104.06322 * 118.64296 * 18 16 15 20 20 O 1.44432 * 104.80442 * 23.97823 * 19 18 16 21 21 C 1.44644 * 105.36666 * 319.56824 * 20 19 18 22 22 C 1.47067 * 136.06307 * 185.20676 * 13 11 10 23 23 C 1.36126 * 109.12784 * 179.97438 * 10 9 7 24 24 C 1.41706 * 107.74284 * 359.97438 * 23 10 9 25 25 C 1.40020 * 133.35075 * 180.02562 * 24 23 10 26 26 C 1.36576 * 119.83382 * 179.97438 * 25 24 23 27 27 C 1.38851 * 120.59786 * 0.02562 * 26 25 24 28 28 C 1.37843 * 120.63635 * 359.95993 * 27 26 25 29 29 C 1.37832 * 125.62171 * 327.36796 * 9 7 2 30 30 H 0.97000 * 119.99501 * 173.22654 * 1 2 3 31 31 H 1.08991 * 113.46724 * 321.94343 * 14 13 11 32 32 H 1.08998 * 113.46075 * 92.38332 * 14 13 11 33 33 H 1.08996 * 114.19585 * 87.73503 * 15 14 13 34 34 H 1.09006 * 110.50835 * 237.28609 * 18 16 15 35 35 H 1.08996 * 110.50869 * 359.97438 * 18 16 15 36 36 H 1.08996 * 110.37224 * 142.80903 * 19 18 16 37 37 H 1.08996 * 110.37074 * 265.14772 * 19 18 16 38 38 H 1.09004 * 110.33894 * 281.58979 * 21 20 19 39 39 H 1.09000 * 110.50668 * 159.18614 * 21 20 19 40 40 H 1.08995 * 113.46925 * 267.62031 * 22 13 11 41 41 H 1.09001 * 113.46298 * 38.00210 * 22 13 11 42 42 H 1.07991 * 126.13143 * 180.02562 * 23 10 9 43 43 H 1.08005 * 120.08493 * 359.97438 * 25 24 23 44 44 H 1.07998 * 119.70011 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.68472 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.09573 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.4949 2.0466 1.4001 5 1 3.5449 1.4404 -0.7000 6 1 1.4447 2.6528 -0.7001 7 6 2.0086 -1.2038 0.0005 8 1 3.0142 -1.2469 -0.3912 9 7 1.4186 -2.3346 0.4977 10 6 1.6382 -3.6221 0.0458 11 6 2.5439 -3.9982 -1.0478 12 8 3.0917 -3.1353 -1.7079 13 7 2.7680 -5.2990 -1.3202 14 6 2.2516 -6.5871 -0.8332 15 6 3.5933 -7.2148 -1.2257 16 6 3.4776 -8.5979 -1.8695 17 1 2.5609 -8.6703 -2.4548 18 6 4.7100 -8.8875 -2.7553 19 6 5.3541 -10.1329 -2.1069 20 8 4.2758 -10.7773 -1.3941 21 6 3.5193 -9.7025 -0.7902 22 6 3.6414 -6.0552 -2.2302 23 6 0.8813 -4.4863 0.7761 24 6 0.1544 -3.7269 1.7263 25 6 -0.7657 -4.0651 2.7261 26 6 -1.3127 -3.0860 3.5055 27 6 -0.9653 -1.7551 3.3158 28 6 -0.0617 -1.3974 2.3382 29 6 0.5122 -2.3774 1.5351 30 1 -0.4849 -0.8342 -0.0991 31 1 2.0647 -6.6018 0.2405 32 1 1.4095 -6.9643 -1.4134 33 1 4.3549 -7.1640 -0.4477 34 1 4.4023 -9.1054 -3.7781 35 1 5.4013 -8.0451 -2.7350 36 1 5.7522 -10.7971 -2.8739 37 1 6.1421 -9.8357 -1.4149 38 1 4.0247 -9.3396 0.1048 39 1 2.5098 -10.0350 -0.5484 40 1 3.1733 -6.2894 -3.1863 41 1 4.6336 -5.6180 -2.3427 42 1 0.8425 -5.5586 0.6538 43 1 -1.0422 -5.0977 2.8807 44 1 -2.0218 -3.3493 4.2763 45 1 -1.4072 -0.9927 3.9403 46 1 0.2025 -0.3596 2.1985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619423137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = 1.949087 kcal Electronic energy + Delta-G solvation = -29364.587754 eV Core-core repulsion = 25413.185839 eV Total energy + Delta-G solvation = -3951.401915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47095 -41.50980 -39.96439 -38.72749 -37.56868 -35.83057 -33.79256 -32.36043 -31.04237 -30.81193 -30.14609 -28.61920 -27.15350 -26.43461 -24.94904 -23.63118 -23.15913 -22.46617 -21.81238 -20.99123 -20.48150 -19.73419 -17.82615 -17.65434 -17.52948 -17.25827 -17.15959 -16.53119 -16.17373 -16.07289 -15.78963 -15.62381 -15.14780 -15.09609 -14.82009 -14.65047 -14.47954 -14.07830 -13.84426 -13.74376 -13.59813 -13.50094 -12.90168 -12.86378 -12.65101 -12.53878 -12.29719 -12.22796 -12.15523 -12.03365 -11.97207 -11.61578 -11.45132 -11.23409 -10.93779 -10.88661 -10.67594 -10.57748 -9.82511 -9.43826 -8.84612 -8.55281 -6.43635 0.00314 0.96241 1.28108 1.38903 1.49608 1.59450 1.70066 2.20903 2.37117 2.70296 2.92333 3.04543 3.15704 3.21110 3.60218 3.70496 3.90854 3.98004 4.08914 4.13773 4.22762 4.31879 4.34711 4.40852 4.45714 4.46966 4.51387 4.53337 4.61822 4.67134 4.72624 4.77660 4.89702 4.92695 4.95281 4.98537 5.13396 5.15216 5.18304 5.20411 5.31948 5.34932 5.43427 5.70931 5.75480 5.84713 5.92227 6.10105 6.13642 6.43920 6.56874 6.87862 7.12954 7.24505 8.05958 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.003106 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.996898 B = 9011.750457 C =10711.362352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C -0.014 4.014 3 Si 1.127 2.873 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.436 4.436 8 H 0.088 0.912 9 N -0.270 5.270 10 C -0.059 4.059 11 C 0.605 3.395 12 O -0.586 6.586 13 N -0.648 5.648 14 C 0.096 3.904 15 C -0.089 4.089 16 C -0.100 4.100 17 H 0.100 0.900 18 C -0.150 4.150 19 C 0.040 3.960 20 O -0.402 6.402 21 C 0.047 3.953 22 C 0.108 3.892 23 C -0.183 4.183 24 C -0.145 4.145 25 C -0.079 4.079 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.117 4.117 29 C 0.020 3.980 30 H 0.268 0.732 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.176 0.824 43 H 0.149 0.851 44 H 0.152 0.848 45 H 0.136 0.864 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 -18.694 0.199 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.222 4.222 3 Si 0.943 3.057 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.106 0.894 9 N 0.068 4.932 10 C -0.175 4.175 11 C 0.398 3.602 12 O -0.467 6.467 13 N -0.383 5.383 14 C -0.025 4.025 15 C -0.108 4.108 16 C -0.119 4.119 17 H 0.119 0.881 18 C -0.188 4.188 19 C -0.037 4.037 20 O -0.322 6.322 21 C -0.030 4.030 22 C -0.013 4.013 23 C -0.210 4.210 24 C -0.150 4.150 25 C -0.098 4.098 26 C -0.172 4.172 27 C -0.148 4.148 28 C -0.137 4.137 29 C -0.094 4.094 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.193 0.807 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.154 0.846 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.461 -16.315 -0.212 16.915 hybrid contribution 0.314 -0.762 -0.616 1.029 sum 4.775 -17.077 -0.828 17.751 Atomic orbital electron populations 1.70703 1.07643 1.31311 1.36940 1.28235 0.96048 1.05778 0.92152 0.82823 0.74195 0.69642 0.79009 1.18197 1.19698 1.19117 1.20906 1.01559 0.87673 1.46223 0.89443 1.40309 1.28216 1.04742 1.19946 1.20113 1.07920 0.86375 1.03047 1.16817 0.80013 0.81170 0.82234 1.90741 1.53081 1.49780 1.53113 1.49209 1.43876 1.02885 1.42300 1.23548 0.98141 0.78485 1.02351 1.22847 0.97576 0.92403 0.97947 1.22413 1.00505 0.92118 0.96847 0.88125 1.23010 0.96950 0.98588 1.00213 1.23552 0.90054 0.94335 0.95737 1.89137 1.42715 1.30934 1.69378 1.23656 0.97706 0.86357 0.95251 1.23248 0.94700 0.88292 0.95083 1.21079 1.01393 0.99026 0.99514 1.18436 1.03344 0.91569 1.01624 1.20564 0.95183 1.00442 0.93570 1.20835 1.02619 0.91917 1.01788 1.21042 0.97955 0.97800 0.97974 1.20469 0.99331 0.97302 0.96567 1.18858 0.99993 0.96758 0.93781 0.92170 0.88933 0.87300 0.87184 0.89635 0.89748 0.88290 0.91889 0.91492 0.87698 0.88293 0.91351 0.80739 0.83307 0.82987 0.84601 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.05 11.39 21.67 0.25 -48.81 16 2 C -0.01 -0.77 4.21 84.95 0.36 -0.41 16 3 Si 1.13 49.04 29.99 68.60 2.06 51.09 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.44 -26.24 8.88 84.09 0.75 -25.49 16 8 H 0.09 5.57 6.78 -2.91 -0.02 5.55 16 9 N -0.27 -15.43 2.69 -331.35 -0.89 -16.32 16 10 C -0.06 -2.97 6.77 39.91 0.27 -2.70 16 11 C 0.60 28.68 8.02 86.51 0.69 29.37 16 12 O -0.59 -33.03 15.69 -4.26 -0.07 -33.10 16 13 N -0.65 -21.20 3.69 -863.24 -3.19 -24.39 16 14 C 0.10 1.96 6.63 83.10 0.55 2.51 16 15 C -0.09 -1.38 3.30 -10.55 -0.03 -1.42 16 16 C -0.10 -1.14 2.95 -9.78 -0.03 -1.17 16 17 H 0.10 1.01 7.94 -2.39 -0.02 0.99 16 18 C -0.15 -1.61 6.46 31.61 0.20 -1.41 16 19 C 0.04 0.48 7.64 72.49 0.55 1.04 16 20 O -0.40 -6.86 11.65 -148.98 -1.74 -8.60 16 21 C 0.05 0.58 7.21 72.49 0.52 1.10 16 22 C 0.11 2.47 7.53 83.18 0.63 3.10 16 23 C -0.18 -7.65 9.93 22.64 0.22 -7.43 16 24 C -0.15 -6.47 6.16 -21.33 -0.13 -6.60 16 25 C -0.08 -2.80 10.06 22.31 0.22 -2.58 16 26 C -0.15 -5.15 9.97 22.03 0.22 -4.93 16 27 C -0.13 -5.04 10.02 22.32 0.22 -4.81 16 28 C -0.12 -5.79 8.30 22.38 0.19 -5.60 16 29 C 0.02 1.06 5.56 39.06 0.22 1.27 16 30 H 0.27 16.62 6.97 -92.71 -0.65 15.97 16 31 H 0.09 1.83 6.08 -2.39 -0.01 1.82 16 32 H 0.11 1.77 7.96 -2.39 -0.02 1.75 16 33 H 0.11 1.72 7.96 -2.39 -0.02 1.71 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 0.88 7.40 -2.39 -0.02 0.86 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.79 7.75 -2.38 -0.02 0.77 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.18 5.44 5.02 -2.92 -0.01 5.42 16 43 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 45 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 46 H 0.10 5.34 6.08 -2.91 -0.02 5.32 16 Total: -1.00 -80.87 368.92 3.18 -77.70 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.13 Total: 28.57 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 5.63 Total: -26.15 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -3.83 Total: -89.52 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.80 Total: -41.69 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.06 Total: 51.09 kcal Total: -80.87 3.18 -77.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619423137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.649 kcal (2) G-P(sol) polarization free energy of solvation -80.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds