Wall clock time and date at job start Sat Apr 11 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86801 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46968 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99526 * 3 2 1 7 7 C 1.39010 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99981 * 173.64849 * 7 2 1 9 9 N 1.36889 * 120.00256 * 353.64832 * 7 2 1 10 10 C 1.38208 * 125.62131 * 139.53170 * 9 7 2 11 11 C 1.46884 * 125.43800 * 0.07919 * 10 9 7 12 12 O 1.21662 * 120.00272 * 5.09901 * 11 10 9 13 13 N 1.34777 * 119.99922 * 185.09691 * 11 10 9 14 14 C 1.47067 * 136.06099 * 5.06569 * 13 11 10 15 15 C 1.53763 * 87.88683 * 152.96374 * 14 13 11 16 16 C 1.53001 * 114.08563 * 139.78453 * 15 14 13 17 17 H 1.09002 * 110.43493 * 327.26402 * 16 15 14 18 18 C 1.54799 * 110.48949 * 204.71995 * 16 15 14 19 19 C 1.55226 * 101.98962 * 220.51756 * 18 16 15 20 20 O 1.44383 * 103.56501 * 36.87874 * 19 18 16 21 21 C 1.43745 * 106.97265 * 320.01377 * 20 19 18 22 22 C 1.47079 * 136.05416 * 185.43989 * 13 11 10 23 23 C 1.36131 * 109.12662 * 179.82080 * 10 9 7 24 24 C 1.41695 * 107.74661 * 0.35168 * 23 10 9 25 25 C 1.40023 * 133.35139 * 179.97438 * 24 23 10 26 26 C 1.36578 * 119.83006 * 179.67677 * 25 24 23 27 27 C 1.38847 * 120.60460 * 0.02562 * 26 25 24 28 28 C 1.37851 * 120.63377 * 359.97438 * 27 26 25 29 29 C 1.37840 * 125.61905 * 319.58521 * 9 7 2 30 30 H 0.97000 * 119.99975 * 5.00455 * 1 2 3 31 31 H 1.08997 * 113.47125 * 267.70033 * 14 13 11 32 32 H 1.09001 * 113.46130 * 38.13799 * 14 13 11 33 33 H 1.08997 * 114.39383 * 272.68029 * 15 14 13 34 34 H 1.09006 * 110.90600 * 338.63505 * 18 16 15 35 35 H 1.08996 * 110.91345 * 102.24226 * 18 16 15 36 36 H 1.08994 * 110.52100 * 278.38237 * 19 18 16 37 37 H 1.09003 * 110.78363 * 155.49442 * 19 18 16 38 38 H 1.09000 * 109.87970 * 267.09106 * 21 20 19 39 39 H 1.09004 * 109.87922 * 145.93915 * 21 20 19 40 40 H 1.09000 * 113.46446 * 321.86489 * 22 13 11 41 41 H 1.08998 * 113.46674 * 92.30602 * 22 13 11 42 42 H 1.07997 * 126.12332 * 180.25275 * 23 10 9 43 43 H 1.07996 * 120.08576 * 359.69671 * 25 24 23 44 44 H 1.08005 * 119.69769 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.68947 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.09666 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 -0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8887 2.3965 1.2124 7 6 2.0085 -1.2038 0.0005 8 1 3.0836 -1.2067 -0.1029 9 7 1.3304 -2.3857 0.1322 10 6 1.5998 -3.5499 -0.5621 11 6 2.6632 -3.7191 -1.5612 12 8 3.4524 -2.8168 -1.7683 13 7 2.7646 -4.8741 -2.2484 14 6 1.9841 -6.1162 -2.3529 15 6 2.5442 -6.2813 -3.7754 16 6 2.9178 -7.7204 -4.1363 17 1 3.2729 -8.2539 -3.2546 18 6 3.9930 -7.7381 -5.2498 19 6 3.5085 -8.9084 -6.1472 20 8 2.0700 -8.7912 -6.1092 21 6 1.7122 -8.4506 -4.7593 22 6 3.7081 -5.4495 -3.2189 23 6 0.7259 -4.5166 -0.1682 24 6 -0.1354 -3.9500 0.8039 25 6 -1.2081 -4.4549 1.5488 26 6 -1.8579 -3.6469 2.4378 27 6 -1.4651 -2.3264 2.6107 28 6 -0.4120 -1.8065 1.8889 29 6 0.2658 -2.6104 0.9784 30 1 -0.4850 0.8368 -0.0733 31 1 2.3125 -6.8945 -1.6641 32 1 0.9064 -5.9552 -2.3251 33 1 1.9644 -5.7773 -4.5487 34 1 3.9952 -6.7991 -5.8033 35 1 4.9793 -7.9459 -4.8350 36 1 3.8268 -9.8648 -5.7326 37 1 3.8762 -8.7918 -7.1667 38 1 1.4949 -9.3566 -4.1936 39 1 0.8418 -7.7944 -4.7608 40 1 4.0990 -4.7206 -3.9287 41 1 4.4909 -6.0521 -2.7583 42 1 0.6938 -5.5327 -0.5325 43 1 -1.5207 -5.4807 1.4210 44 1 -2.6853 -4.0384 3.0110 45 1 -1.9897 -1.7004 3.3174 46 1 -0.1136 -0.7783 2.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619423138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:34 Heat of formation + Delta-G solvation = 24.390678 kcal Electronic energy + Delta-G solvation = -29314.550009 eV Core-core repulsion = 25364.121235 eV Total energy + Delta-G solvation = -3950.428774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.77625 -40.14221 -38.93133 -37.16207 -35.69469 -33.68198 -32.84874 -30.70983 -30.03408 -28.94374 -28.92647 -27.22460 -25.97364 -24.77910 -23.61603 -22.62152 -21.85384 -20.78432 -20.30466 -19.80565 -18.79228 -17.73911 -16.68265 -16.51340 -16.08329 -15.85811 -15.56308 -15.28440 -14.79483 -14.76768 -14.55450 -14.01285 -13.75319 -13.48185 -13.23637 -12.98140 -12.85206 -12.79396 -12.57337 -12.42043 -12.03866 -11.94947 -11.80816 -11.70683 -11.49814 -11.39334 -11.18918 -11.10169 -10.87119 -10.70021 -10.51728 -10.36119 -10.19245 -9.87353 -9.74165 -9.21176 -9.07064 -8.57707 -8.39254 -7.12165 -6.77469 -6.50843 -4.41695 1.86444 2.81663 3.01804 3.05184 3.08571 3.16052 3.17987 3.70171 3.87135 3.94861 4.21624 4.42702 4.52923 4.62775 4.72178 4.76519 4.89094 4.94102 5.08567 5.13625 5.17746 5.30317 5.34080 5.43860 5.45144 5.48753 5.58681 5.59982 5.67025 5.74352 5.85291 5.87535 6.02430 6.09638 6.17938 6.24809 6.37630 6.62113 6.63779 6.76959 6.92979 7.08273 7.17342 7.22735 7.54112 7.63746 7.75849 7.99244 8.05750 8.16837 8.47849 8.73125 8.96531 9.35363 10.27000 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003166 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.995681 B = 8842.759775 C =10539.056551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.328 4.328 8 H 0.118 0.882 9 N -0.234 5.234 10 C -0.021 4.021 11 C 0.618 3.382 12 O -0.531 6.531 13 N -0.645 5.645 14 C 0.105 3.895 15 C -0.120 4.120 16 C -0.109 4.109 17 H 0.089 0.911 18 C -0.150 4.150 19 C 0.045 3.955 20 O -0.380 6.380 21 C 0.051 3.949 22 C 0.116 3.884 23 C -0.207 4.207 24 C -0.127 4.127 25 C -0.097 4.097 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.036 4.036 29 C 0.089 3.911 30 H 0.280 0.720 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -14.476 -6.152 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.165 4.165 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.457 4.457 8 H 0.135 0.865 9 N 0.106 4.894 10 C -0.138 4.138 11 C 0.411 3.589 12 O -0.407 6.407 13 N -0.383 5.383 14 C -0.018 4.018 15 C -0.139 4.139 16 C -0.129 4.129 17 H 0.107 0.893 18 C -0.188 4.188 19 C -0.031 4.031 20 O -0.299 6.299 21 C -0.026 4.026 22 C -0.007 4.007 23 C -0.235 4.235 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.173 4.173 27 C -0.182 4.182 28 C -0.055 4.055 29 C -0.026 4.026 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.145 0.855 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.971 -13.267 -6.306 15.217 hybrid contribution 0.325 0.843 0.103 0.909 sum 4.296 -12.424 -6.203 14.536 Atomic orbital electron populations 1.69976 1.06271 1.29182 1.40747 1.25744 0.95709 1.00752 0.94334 0.85682 0.80170 0.79652 0.78342 1.18451 1.19931 1.19851 1.20143 0.93526 0.80928 1.51111 0.86496 1.39938 1.20641 1.06977 1.21879 1.19445 1.02462 0.90427 1.01473 1.16759 0.83514 0.79753 0.78847 1.90775 1.44170 1.39359 1.66401 1.49088 1.28678 1.14732 1.45775 1.23191 0.98564 0.85940 0.94143 1.23180 0.98674 0.94535 0.97489 1.22492 0.95673 0.95480 0.99236 0.89257 1.23229 0.98915 0.99964 0.96671 1.23588 0.81305 0.97470 1.00764 1.88885 1.21562 1.91121 1.28332 1.23264 0.97696 0.98700 0.82948 1.22840 0.93238 0.94554 0.90037 1.20482 0.99778 0.98266 1.04960 1.17971 0.99452 0.93924 1.01755 1.19977 0.96090 0.98204 0.97331 1.20266 1.01153 0.94695 1.01140 1.20555 0.99318 0.95602 1.02684 1.20267 0.93980 0.98292 0.93005 1.18189 0.94464 0.93686 0.96280 0.90892 0.89918 0.89598 0.87361 0.90000 0.89986 0.92319 0.89110 0.92176 0.89308 0.90641 0.90282 0.85478 0.88048 0.88115 0.87826 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.18 10.03 55.50 0.56 -21.63 16 2 C 0.05 1.18 4.85 -17.47 -0.08 1.10 16 3 Si 0.94 20.20 29.56 -169.99 -5.02 15.18 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.33 -9.11 8.85 -15.01 -0.13 -9.24 16 8 H 0.12 3.32 6.86 -52.48 -0.36 2.96 16 9 N -0.23 -6.37 2.84 -56.08 -0.16 -6.53 16 10 C -0.02 -0.52 6.76 -82.25 -0.56 -1.07 16 11 C 0.62 14.09 8.02 -12.76 -0.10 13.98 16 12 O -0.53 -13.82 15.76 5.22 0.08 -13.74 16 13 N -0.65 -10.87 3.68 -186.49 -0.69 -11.56 16 14 C 0.11 1.26 6.20 -8.36 -0.05 1.21 16 15 C -0.12 -1.17 3.17 -89.97 -0.29 -1.46 16 16 C -0.11 -0.82 2.88 -89.10 -0.26 -1.07 16 17 H 0.09 0.58 7.93 -51.93 -0.41 0.16 16 18 C -0.15 -1.02 6.34 -24.60 -0.16 -1.18 16 19 C 0.05 0.33 7.72 38.34 0.30 0.62 16 20 O -0.38 -3.87 11.52 -35.23 -0.41 -4.27 16 21 C 0.05 0.42 7.37 37.73 0.28 0.70 16 22 C 0.12 1.43 7.79 -8.49 -0.07 1.36 16 23 C -0.21 -4.53 9.89 -39.02 -0.39 -4.92 16 24 C -0.13 -2.97 6.16 -106.89 -0.66 -3.63 16 25 C -0.10 -1.98 10.06 -39.51 -0.40 -2.38 16 26 C -0.15 -3.01 9.97 -39.96 -0.40 -3.41 16 27 C -0.16 -3.40 10.02 -39.50 -0.40 -3.79 16 28 C -0.04 -0.88 8.40 -39.41 -0.33 -1.21 16 29 C 0.09 2.31 6.06 -83.83 -0.51 1.80 16 30 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.08 0.83 7.95 -51.93 -0.41 0.42 16 32 H 0.09 1.07 6.84 -51.93 -0.36 0.72 16 33 H 0.11 1.14 8.11 -51.93 -0.42 0.72 16 34 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.74 7.67 -51.93 -0.40 0.34 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.13 2.26 5.39 -52.49 -0.28 1.98 16 43 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 45 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 46 H 0.12 3.05 6.27 -52.49 -0.33 2.72 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -33.04 371.43 -10.55 -43.59 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.32 Total: 5.95 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -4.19 Total: -12.59 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.29 Total: -39.71 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.32 Total: -18.02 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.04 -10.55 -43.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619423138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.980 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds