Wall clock time and date at job start Sat Apr 11 2020 06:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86801 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47214 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46968 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99526 * 3 2 1 7 7 C 1.39010 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99981 * 173.64849 * 7 2 1 9 9 N 1.36889 * 120.00256 * 353.64832 * 7 2 1 10 10 C 1.38208 * 125.62131 * 139.53170 * 9 7 2 11 11 C 1.46884 * 125.43800 * 0.07919 * 10 9 7 12 12 O 1.21662 * 120.00272 * 5.09901 * 11 10 9 13 13 N 1.34777 * 119.99922 * 185.09691 * 11 10 9 14 14 C 1.47067 * 136.06099 * 5.06569 * 13 11 10 15 15 C 1.53763 * 87.88683 * 152.96374 * 14 13 11 16 16 C 1.53001 * 114.08563 * 139.78453 * 15 14 13 17 17 H 1.09002 * 110.43493 * 327.26402 * 16 15 14 18 18 C 1.54799 * 110.48949 * 204.71995 * 16 15 14 19 19 C 1.55226 * 101.98962 * 220.51756 * 18 16 15 20 20 O 1.44383 * 103.56501 * 36.87874 * 19 18 16 21 21 C 1.43745 * 106.97265 * 320.01377 * 20 19 18 22 22 C 1.47079 * 136.05416 * 185.43989 * 13 11 10 23 23 C 1.36131 * 109.12662 * 179.82080 * 10 9 7 24 24 C 1.41695 * 107.74661 * 0.35168 * 23 10 9 25 25 C 1.40023 * 133.35139 * 179.97438 * 24 23 10 26 26 C 1.36578 * 119.83006 * 179.67677 * 25 24 23 27 27 C 1.38847 * 120.60460 * 0.02562 * 26 25 24 28 28 C 1.37851 * 120.63377 * 359.97438 * 27 26 25 29 29 C 1.37840 * 125.61905 * 319.58521 * 9 7 2 30 30 H 0.97000 * 119.99975 * 5.00455 * 1 2 3 31 31 H 1.08997 * 113.47125 * 267.70033 * 14 13 11 32 32 H 1.09001 * 113.46130 * 38.13799 * 14 13 11 33 33 H 1.08997 * 114.39383 * 272.68029 * 15 14 13 34 34 H 1.09006 * 110.90600 * 338.63505 * 18 16 15 35 35 H 1.08996 * 110.91345 * 102.24226 * 18 16 15 36 36 H 1.08994 * 110.52100 * 278.38237 * 19 18 16 37 37 H 1.09003 * 110.78363 * 155.49442 * 19 18 16 38 38 H 1.09000 * 109.87970 * 267.09106 * 21 20 19 39 39 H 1.09004 * 109.87922 * 145.93915 * 21 20 19 40 40 H 1.09000 * 113.46446 * 321.86489 * 22 13 11 41 41 H 1.08998 * 113.46674 * 92.30602 * 22 13 11 42 42 H 1.07997 * 126.12332 * 180.25275 * 23 10 9 43 43 H 1.07996 * 120.08576 * 359.69671 * 25 24 23 44 44 H 1.08005 * 119.69769 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.68947 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.09666 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 -0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8887 2.3965 1.2124 7 6 2.0085 -1.2038 0.0005 8 1 3.0836 -1.2067 -0.1029 9 7 1.3304 -2.3857 0.1322 10 6 1.5998 -3.5499 -0.5621 11 6 2.6632 -3.7191 -1.5612 12 8 3.4524 -2.8168 -1.7683 13 7 2.7646 -4.8741 -2.2484 14 6 1.9841 -6.1162 -2.3529 15 6 2.5442 -6.2813 -3.7754 16 6 2.9178 -7.7204 -4.1363 17 1 3.2729 -8.2539 -3.2546 18 6 3.9930 -7.7381 -5.2498 19 6 3.5085 -8.9084 -6.1472 20 8 2.0700 -8.7912 -6.1092 21 6 1.7122 -8.4506 -4.7593 22 6 3.7081 -5.4495 -3.2189 23 6 0.7259 -4.5166 -0.1682 24 6 -0.1354 -3.9500 0.8039 25 6 -1.2081 -4.4549 1.5488 26 6 -1.8579 -3.6469 2.4378 27 6 -1.4651 -2.3264 2.6107 28 6 -0.4120 -1.8065 1.8889 29 6 0.2658 -2.6104 0.9784 30 1 -0.4850 0.8368 -0.0733 31 1 2.3125 -6.8945 -1.6641 32 1 0.9064 -5.9552 -2.3251 33 1 1.9644 -5.7773 -4.5487 34 1 3.9952 -6.7991 -5.8033 35 1 4.9793 -7.9459 -4.8350 36 1 3.8268 -9.8648 -5.7326 37 1 3.8762 -8.7918 -7.1667 38 1 1.4949 -9.3566 -4.1936 39 1 0.8418 -7.7944 -4.7608 40 1 4.0990 -4.7206 -3.9287 41 1 4.4909 -6.0521 -2.7583 42 1 0.6938 -5.5327 -0.5325 43 1 -1.5207 -5.4807 1.4210 44 1 -2.6853 -4.0384 3.0110 45 1 -1.9897 -1.7004 3.3174 46 1 -0.1136 -0.7783 2.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619423138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:33 Heat of formation + Delta-G solvation = 4.237798 kcal Electronic energy + Delta-G solvation = -29315.423903 eV Core-core repulsion = 25364.121235 eV Total energy + Delta-G solvation = -3951.302669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26778 -41.39627 -39.91766 -38.64133 -37.40426 -35.53522 -33.74934 -32.47097 -31.01226 -30.67554 -30.10226 -28.55511 -27.16349 -26.55450 -24.88035 -23.47426 -22.99413 -22.38229 -21.63290 -21.01117 -20.28431 -19.45774 -17.85255 -17.53184 -17.32396 -17.11022 -17.09054 -16.50699 -16.38878 -16.14801 -15.77212 -15.36924 -15.07180 -14.87610 -14.70352 -14.54322 -14.18246 -13.99302 -13.81000 -13.61076 -13.51534 -13.38447 -13.19201 -12.94266 -12.86478 -12.56538 -12.35212 -12.21578 -12.16089 -11.99330 -11.93913 -11.52265 -11.49015 -11.26648 -11.00425 -10.81320 -10.49044 -10.36118 -9.74469 -8.94567 -8.60184 -8.30932 -6.41836 0.14964 1.11479 1.26415 1.33011 1.41250 1.45011 1.70291 2.10737 2.47825 2.86621 2.98544 3.09137 3.17650 3.39674 3.68142 3.69802 3.96707 3.99089 4.12163 4.24486 4.36795 4.40357 4.45337 4.47852 4.50093 4.51605 4.58006 4.61621 4.70759 4.77596 4.88306 4.88803 4.93321 4.95332 5.02065 5.06804 5.14273 5.17046 5.23692 5.27551 5.37261 5.41566 5.48751 5.76016 5.93540 6.00732 6.04966 6.28192 6.36459 6.58862 6.65230 6.93815 7.25601 7.46548 8.36728 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003166 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.995681 B = 8842.759775 C =10539.056551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.008 3.992 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.361 4.361 8 H 0.091 0.909 9 N -0.270 5.270 10 C -0.053 4.053 11 C 0.607 3.393 12 O -0.585 6.585 13 N -0.649 5.649 14 C 0.099 3.901 15 C -0.093 4.093 16 C -0.099 4.099 17 H 0.113 0.887 18 C -0.149 4.149 19 C 0.041 3.959 20 O -0.409 6.409 21 C 0.047 3.953 22 C 0.110 3.890 23 C -0.182 4.182 24 C -0.152 4.152 25 C -0.088 4.088 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.079 4.079 29 C 0.061 3.939 30 H 0.283 0.717 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.171 0.829 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.131 0.869 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 -17.919 -5.736 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.199 4.199 3 Si 0.820 3.180 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.489 4.489 8 H 0.109 0.891 9 N 0.067 4.933 10 C -0.168 4.168 11 C 0.399 3.601 12 O -0.466 6.466 13 N -0.384 5.384 14 C -0.022 4.022 15 C -0.112 4.112 16 C -0.118 4.118 17 H 0.131 0.869 18 C -0.187 4.187 19 C -0.035 4.035 20 O -0.329 6.329 21 C -0.029 4.029 22 C -0.011 4.011 23 C -0.209 4.209 24 C -0.157 4.157 25 C -0.107 4.107 26 C -0.172 4.172 27 C -0.165 4.165 28 C -0.099 4.099 29 C -0.053 4.053 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.188 0.812 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.149 0.851 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.874 -16.790 -5.918 18.033 hybrid contribution 0.572 1.649 -0.032 1.746 sum 3.446 -15.141 -5.950 16.629 Atomic orbital electron populations 1.70062 1.07250 1.29858 1.41888 1.26524 0.96537 1.03276 0.93604 0.84813 0.78340 0.75826 0.79030 1.19223 1.19210 1.18087 1.19989 0.92794 0.82555 1.53544 0.89099 1.40135 1.21938 1.07513 1.23690 1.20150 1.03767 0.90445 1.02463 1.16816 0.82880 0.81142 0.79221 1.90721 1.45896 1.41770 1.68197 1.49210 1.30536 1.14325 1.44322 1.23610 0.98286 0.84186 0.96163 1.22950 0.96547 0.95799 0.95932 1.22454 0.95715 0.93329 1.00302 0.86919 1.23242 0.99636 0.99459 0.96318 1.23753 0.79998 0.98277 1.01456 1.88860 1.23258 1.91332 1.29438 1.23350 0.97672 0.99367 0.82552 1.23228 0.94300 0.94524 0.89075 1.20965 0.97627 0.99305 1.03014 1.18478 1.01041 0.93148 1.03022 1.20469 0.94214 1.00214 0.95791 1.20758 1.01897 0.93629 1.00947 1.20993 0.97356 0.96907 1.01231 1.20303 0.96550 0.97729 0.95357 1.18767 0.94500 0.95456 0.96595 0.90689 0.86552 0.89764 0.88376 0.91014 0.88078 0.90823 0.88588 0.90635 0.89907 0.91857 0.87400 0.81184 0.83800 0.83524 0.85101 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.46 10.03 21.67 0.22 -48.25 16 2 C 0.01 0.43 4.85 84.95 0.41 0.84 16 3 Si 1.00 43.97 29.56 68.60 2.03 45.99 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.36 -21.64 8.85 84.09 0.74 -20.90 16 8 H 0.09 5.71 6.86 -2.91 -0.02 5.69 16 9 N -0.27 -15.60 2.84 -331.33 -0.94 -16.54 16 10 C -0.05 -2.69 6.76 39.91 0.27 -2.42 16 11 C 0.61 28.88 8.02 86.51 0.69 29.58 16 12 O -0.58 -32.70 15.76 -4.23 -0.07 -32.77 16 13 N -0.65 -21.57 3.68 -862.15 -3.17 -24.75 16 14 C 0.10 2.10 6.20 83.28 0.52 2.62 16 15 C -0.09 -1.61 3.17 -10.37 -0.03 -1.64 16 16 C -0.10 -1.12 2.88 -9.81 -0.03 -1.15 16 17 H 0.11 0.85 7.93 -2.39 -0.02 0.83 16 18 C -0.15 -1.60 6.34 31.97 0.20 -1.39 16 19 C 0.04 0.49 7.72 72.75 0.56 1.05 16 20 O -0.41 -7.48 11.52 -148.98 -1.72 -9.20 16 21 C 0.05 0.64 7.37 72.35 0.53 1.17 16 22 C 0.11 2.55 7.79 83.18 0.65 3.20 16 23 C -0.18 -7.78 9.89 22.63 0.22 -7.55 16 24 C -0.15 -7.01 6.16 -21.34 -0.13 -7.14 16 25 C -0.09 -3.28 10.06 22.31 0.22 -3.06 16 26 C -0.15 -5.43 9.97 22.03 0.22 -5.22 16 27 C -0.14 -5.88 10.02 22.32 0.22 -5.66 16 28 C -0.08 -4.01 8.40 22.38 0.19 -3.82 16 29 C 0.06 3.30 6.06 39.06 0.24 3.53 16 30 H 0.28 14.70 8.31 -92.71 -0.77 13.92 16 31 H 0.12 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.08 1.85 6.84 -2.39 -0.02 1.84 16 33 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 34 H 0.07 0.93 7.87 -2.38 -0.02 0.91 16 35 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.20 7.67 -2.38 -0.02 1.18 16 40 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 42 H 0.17 5.48 5.39 -2.91 -0.02 5.47 16 43 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 44 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 46 H 0.10 5.23 6.27 -2.91 -0.02 5.21 16 Total: -1.00 -80.30 371.43 3.05 -77.25 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.00 Total: 26.22 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 5.71 Total: -17.96 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -3.90 Total: -89.53 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -1.78 Total: -41.97 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -80.30 3.05 -77.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619423138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.484 kcal (2) G-P(sol) polarization free energy of solvation -80.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds