Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46798 * 240.00376 * 3 2 1 5 5 H 1.48497 * 109.46808 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47229 * 119.99852 * 3 2 1 7 7 C 1.38651 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99718 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99920 * 185.07624 * 9 7 2 11 11 C 1.38879 * 120.06538 * 174.01049 * 10 9 7 12 12 C 1.38110 * 119.92307 * 179.72202 * 11 10 9 13 13 C 1.38300 * 120.07140 * 0.52281 * 12 11 10 14 14 C 1.50698 * 119.92918 * 179.74867 * 13 12 11 15 15 N 1.46902 * 109.47179 * 275.45167 * 14 13 12 16 16 C 1.46902 * 110.99642 * 288.09787 * 15 14 13 17 17 C 1.50698 * 109.47083 * 297.08197 * 16 15 14 18 18 N 1.34779 * 120.00212 * 182.14951 * 17 16 15 19 19 O 1.21284 * 120.00567 * 2.14280 * 17 16 15 20 20 C 1.46893 * 111.00017 * 164.14672 * 15 14 13 21 21 C 1.50701 * 109.46993 * 189.99994 * 20 15 14 22 22 C 1.38241 * 119.99575 * 269.72194 * 21 20 15 23 23 C 1.38230 * 119.99768 * 179.76401 * 22 21 20 24 24 C 1.38236 * 119.99972 * 0.51301 * 23 22 21 25 25 C 1.38237 * 119.99826 * 359.74191 * 24 23 22 26 26 C 1.38226 * 120.00415 * 0.02562 * 25 24 23 27 27 C 1.38297 * 120.13495 * 359.77029 * 13 12 11 28 28 C 1.38100 * 120.07460 * 359.95335 * 27 13 12 29 29 H 0.97001 * 120.00366 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.03891 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96017 * 180.27694 * 12 11 10 32 32 H 1.09003 * 109.47124 * 35.45203 * 14 13 12 33 33 H 1.08999 * 109.47000 * 155.44599 * 14 13 12 34 34 H 1.09003 * 109.47200 * 57.07987 * 16 15 14 35 35 H 1.08997 * 109.47238 * 177.08288 * 16 15 14 36 36 H 0.97004 * 119.99600 * 359.97438 * 18 17 16 37 37 H 0.96997 * 120.00614 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.47247 * 309.99808 * 20 15 14 39 39 H 1.09005 * 109.47311 * 69.99605 * 20 15 14 40 40 H 1.08002 * 120.00343 * 359.97438 * 22 21 20 41 41 H 1.08001 * 120.00098 * 180.23100 * 23 22 21 42 42 H 1.08002 * 120.00152 * 179.71881 * 24 23 22 43 43 H 1.08007 * 119.99780 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00809 * 179.97438 * 26 25 24 45 45 H 1.08009 * 119.96029 * 179.97438 * 27 13 12 46 46 H 1.07995 * 120.03638 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1032 1.6966 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1060 11 6 1.4368 -4.7335 0.2377 12 6 2.1878 -5.8881 0.3400 13 6 3.5690 -5.8202 0.3223 14 6 4.3853 -7.0815 0.4399 15 7 4.5509 -7.4272 1.8580 16 6 5.4742 -6.4975 2.5221 17 6 6.8399 -6.6125 1.8954 18 7 7.8652 -5.8806 2.3747 19 8 7.0166 -7.3638 0.9598 20 6 5.0018 -8.8167 2.0120 21 6 4.9253 -9.2117 3.4643 22 6 6.0149 -9.0157 4.2921 23 6 5.9431 -9.3734 5.6254 24 6 4.7854 -9.9369 6.1284 25 6 3.6976 -10.1378 5.2993 26 6 3.7677 -9.7756 3.9672 27 6 4.2025 -4.5973 0.1973 28 6 3.4573 -3.4397 0.0889 29 1 -0.4851 0.8400 0.0004 30 1 0.3584 -4.7866 0.2560 31 1 1.6958 -6.8445 0.4380 32 1 3.8736 -7.8948 -0.0750 33 1 5.3643 -6.9242 -0.0126 34 1 5.1071 -5.4775 2.4083 35 1 5.5388 -6.7443 3.5817 36 1 7.7239 -5.2796 3.1229 37 1 8.7443 -5.9549 1.9717 38 1 4.3622 -9.4737 1.4226 39 1 6.0314 -8.9052 1.6651 40 1 6.9211 -8.5799 3.8980 41 1 6.7931 -9.2169 6.2731 42 1 4.7308 -10.2207 7.1691 43 1 2.7932 -10.5785 5.6923 44 1 2.9181 -9.9329 3.3193 45 1 5.2814 -4.5476 0.1842 46 1 3.9527 -2.4850 -0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732807569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = -0.592683 kcal Electronic energy + Delta-G solvation = -28832.069112 eV Core-core repulsion = 24880.556978 eV Total energy + Delta-G solvation = -3951.512134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57511 -39.13172 -38.92149 -37.04244 -35.73771 -33.87935 -32.42072 -31.87069 -31.05288 -30.14681 -29.78288 -27.94679 -26.02043 -25.05842 -23.04901 -22.67502 -21.92223 -21.46881 -20.58524 -20.05897 -17.95140 -17.56866 -17.10509 -16.85478 -16.71413 -16.00460 -15.50896 -15.35213 -15.00452 -14.64902 -14.57568 -14.39438 -14.18332 -13.77279 -13.55281 -13.51540 -13.35153 -12.96605 -12.73079 -12.65512 -12.34997 -11.89238 -11.80154 -11.67186 -11.38472 -11.30683 -11.13408 -11.06252 -10.71628 -10.62465 -10.60372 -10.49839 -10.40576 -9.77856 -9.31336 -9.03940 -8.92946 -8.80311 -8.15260 -8.06193 -7.13867 -6.43617 -4.02532 1.20445 1.27988 2.25293 2.32756 2.44930 3.12755 3.13345 3.16605 3.41531 3.59534 3.97122 4.13475 4.64240 4.70712 4.71854 4.84047 4.86963 4.97518 5.10744 5.13428 5.27076 5.32668 5.36670 5.43072 5.52869 5.58708 5.61816 5.74085 5.84519 5.91291 5.93918 5.96141 6.08282 6.24899 6.31486 6.37845 6.45897 6.53396 6.59420 6.75466 6.86826 6.88012 6.94129 7.05946 7.11373 7.18248 7.30508 7.44864 7.48553 7.86842 8.01335 8.07374 9.01944 9.73212 10.74486 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.002559 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.639877 B =10940.681187 C =11431.620240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.179 6.179 10 C 0.155 3.845 11 C -0.193 4.193 12 C -0.051 4.051 13 C -0.175 4.175 14 C 0.096 3.904 15 N -0.497 5.497 16 C 0.026 3.974 17 C 0.488 3.512 18 N -0.857 5.857 19 O -0.542 6.542 20 C 0.071 3.929 21 C -0.070 4.070 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.098 4.098 27 C -0.068 4.068 28 C -0.234 4.234 29 H 0.270 0.730 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.402 0.598 37 H 0.396 0.604 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 -16.386 10.092 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.213 4.213 12 C -0.070 4.070 13 C -0.177 4.177 14 C -0.030 4.030 15 N -0.219 5.219 16 C -0.106 4.106 17 C 0.273 3.727 18 N -0.421 5.421 19 O -0.420 6.420 20 C -0.056 4.056 21 C -0.071 4.071 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.117 4.117 27 C -0.087 4.087 28 C -0.253 4.253 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.230 0.770 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.116 0.884 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.491 -16.666 9.676 22.965 hybrid contribution 1.647 1.206 -0.059 2.042 sum 14.138 -15.460 9.617 23.052 Atomic orbital electron populations 1.70026 1.05937 1.27723 1.46160 1.25269 0.95817 0.98770 0.96631 0.85805 0.78714 0.79923 0.79119 1.19561 1.20283 1.19545 1.21252 0.91699 0.80902 1.52932 0.89236 1.83982 1.34300 1.11430 1.78514 1.19388 0.90234 0.88056 0.92168 1.20233 0.99550 0.90390 1.11081 1.20468 0.92863 0.96620 0.97046 1.19148 0.93597 0.93468 1.11449 1.21105 0.99431 0.95567 0.86907 1.62475 1.43449 1.00770 1.15206 1.22440 0.86968 1.01103 1.00061 1.22333 0.88096 0.79025 0.83255 1.44120 1.12916 1.46668 1.38395 1.90655 1.84478 1.38372 1.28534 1.21384 1.02051 0.90025 0.92099 1.19887 0.93690 0.97737 0.95771 1.21026 0.98153 1.00741 0.93828 1.21077 0.98049 0.99542 0.95356 1.21117 0.93670 0.99922 0.99624 1.21171 0.98517 1.00183 0.93951 1.21083 0.97290 0.97876 0.95404 1.20560 0.97717 0.92021 0.98405 1.21094 0.93839 0.98679 1.11730 0.91997 0.86634 0.87081 0.90945 0.91644 0.86790 0.87844 0.76965 0.77328 0.90032 0.90905 0.86951 0.86398 0.86382 0.86171 0.85847 0.88409 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.39 -10.92 9.49 30.88 0.29 -10.62 16 8 H 0.09 2.30 5.21 -52.48 -0.27 2.03 16 9 O -0.18 -5.11 9.76 0.04 0.00 -5.11 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 12 C -0.05 -0.92 9.71 -39.61 -0.38 -1.31 16 13 C -0.18 -3.01 4.91 -104.58 -0.51 -3.52 16 14 C 0.10 1.40 4.79 -4.98 -0.02 1.38 16 15 N -0.50 -6.49 4.65 -238.96 -1.11 -7.60 16 16 C 0.03 0.31 5.27 -4.98 -0.03 0.28 16 17 C 0.49 5.53 6.92 -10.99 -0.08 5.45 16 18 N -0.86 -6.50 8.87 31.22 0.28 -6.22 16 19 O -0.54 -7.87 12.54 5.55 0.07 -7.80 16 20 C 0.07 0.84 4.81 -4.98 -0.02 0.82 16 21 C -0.07 -0.77 4.88 -104.62 -0.51 -1.28 16 22 C -0.12 -1.19 7.96 -39.58 -0.32 -1.51 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 26 C -0.10 -1.03 9.70 -39.59 -0.38 -1.41 16 27 C -0.07 -1.24 8.41 -39.61 -0.33 -1.58 16 28 C -0.23 -5.04 9.17 -39.40 -0.36 -5.40 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 33 H 0.07 1.03 5.31 -51.93 -0.28 0.76 16 34 H 0.11 1.46 6.47 -51.93 -0.34 1.12 16 35 H 0.10 1.07 6.11 -51.93 -0.32 0.76 16 36 H 0.40 2.04 8.83 -40.82 -0.36 1.68 16 37 H 0.40 2.64 8.93 -40.82 -0.36 2.27 16 38 H 0.08 0.92 7.81 -51.93 -0.41 0.51 16 39 H 0.07 0.95 5.36 -51.93 -0.28 0.67 16 40 H 0.11 1.07 7.64 -52.49 -0.40 0.67 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.12 2.68 5.64 -52.49 -0.30 2.38 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -32.95 378.46 -9.73 -42.68 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.81 Total: 10.78 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -4.60 Total: -23.25 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.08 Total: -38.41 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.95 -9.73 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732807569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.089 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds