Wall clock time and date at job start Sat Apr 11 2020 06:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99747 * 2 1 4 4 H 1.48506 * 109.46798 * 240.00376 * 3 2 1 5 5 H 1.48497 * 109.46808 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47229 * 119.99852 * 3 2 1 7 7 C 1.38651 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99718 * 180.02562 * 7 2 1 9 9 O 1.34825 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.35757 * 116.99920 * 185.07624 * 9 7 2 11 11 C 1.38879 * 120.06538 * 174.01049 * 10 9 7 12 12 C 1.38110 * 119.92307 * 179.72202 * 11 10 9 13 13 C 1.38300 * 120.07140 * 0.52281 * 12 11 10 14 14 C 1.50698 * 119.92918 * 179.74867 * 13 12 11 15 15 N 1.46902 * 109.47179 * 275.45167 * 14 13 12 16 16 C 1.46902 * 110.99642 * 288.09787 * 15 14 13 17 17 C 1.50698 * 109.47083 * 297.08197 * 16 15 14 18 18 N 1.34779 * 120.00212 * 182.14951 * 17 16 15 19 19 O 1.21284 * 120.00567 * 2.14280 * 17 16 15 20 20 C 1.46893 * 111.00017 * 164.14672 * 15 14 13 21 21 C 1.50701 * 109.46993 * 189.99994 * 20 15 14 22 22 C 1.38241 * 119.99575 * 269.72194 * 21 20 15 23 23 C 1.38230 * 119.99768 * 179.76401 * 22 21 20 24 24 C 1.38236 * 119.99972 * 0.51301 * 23 22 21 25 25 C 1.38237 * 119.99826 * 359.74191 * 24 23 22 26 26 C 1.38226 * 120.00415 * 0.02562 * 25 24 23 27 27 C 1.38297 * 120.13495 * 359.77029 * 13 12 11 28 28 C 1.38100 * 120.07460 * 359.95335 * 27 13 12 29 29 H 0.97001 * 120.00366 * 359.97438 * 1 2 3 30 30 H 1.07990 * 120.03891 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96017 * 180.27694 * 12 11 10 32 32 H 1.09003 * 109.47124 * 35.45203 * 14 13 12 33 33 H 1.08999 * 109.47000 * 155.44599 * 14 13 12 34 34 H 1.09003 * 109.47200 * 57.07987 * 16 15 14 35 35 H 1.08997 * 109.47238 * 177.08288 * 16 15 14 36 36 H 0.97004 * 119.99600 * 359.97438 * 18 17 16 37 37 H 0.96997 * 120.00614 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.47247 * 309.99808 * 20 15 14 39 39 H 1.09005 * 109.47311 * 69.99605 * 20 15 14 40 40 H 1.08002 * 120.00343 * 359.97438 * 22 21 20 41 41 H 1.08001 * 120.00098 * 180.23100 * 23 22 21 42 42 H 1.08002 * 120.00152 * 179.71881 * 24 23 22 43 43 H 1.08007 * 119.99780 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00809 * 179.97438 * 26 25 24 45 45 H 1.08009 * 119.96029 * 179.97438 * 27 13 12 46 46 H 1.07995 * 120.03638 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2844 2.7464 -0.0006 6 1 3.1032 1.6966 1.2124 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1060 11 6 1.4368 -4.7335 0.2377 12 6 2.1878 -5.8881 0.3400 13 6 3.5690 -5.8202 0.3223 14 6 4.3853 -7.0815 0.4399 15 7 4.5509 -7.4272 1.8580 16 6 5.4742 -6.4975 2.5221 17 6 6.8399 -6.6125 1.8954 18 7 7.8652 -5.8806 2.3747 19 8 7.0166 -7.3638 0.9598 20 6 5.0018 -8.8167 2.0120 21 6 4.9253 -9.2117 3.4643 22 6 6.0149 -9.0157 4.2921 23 6 5.9431 -9.3734 5.6254 24 6 4.7854 -9.9369 6.1284 25 6 3.6976 -10.1378 5.2993 26 6 3.7677 -9.7756 3.9672 27 6 4.2025 -4.5973 0.1973 28 6 3.4573 -3.4397 0.0889 29 1 -0.4851 0.8400 0.0004 30 1 0.3584 -4.7866 0.2560 31 1 1.6958 -6.8445 0.4380 32 1 3.8736 -7.8948 -0.0750 33 1 5.3643 -6.9242 -0.0126 34 1 5.1071 -5.4775 2.4083 35 1 5.5388 -6.7443 3.5817 36 1 7.7239 -5.2796 3.1229 37 1 8.7443 -5.9549 1.9717 38 1 4.3622 -9.4737 1.4226 39 1 6.0314 -8.9052 1.6651 40 1 6.9211 -8.5799 3.8980 41 1 6.7931 -9.2169 6.2731 42 1 4.7308 -10.2207 7.1691 43 1 2.7932 -10.5785 5.6923 44 1 2.9181 -9.9329 3.3193 45 1 5.2814 -4.5476 0.1842 46 1 3.9527 -2.4850 -0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732807569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:42 Heat of formation + Delta-G solvation = -23.180770 kcal Electronic energy + Delta-G solvation = -28833.048605 eV Core-core repulsion = 24880.556978 eV Total energy + Delta-G solvation = -3952.491627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55041 -40.63936 -39.85526 -38.55328 -36.96459 -34.69513 -34.31440 -32.93219 -31.78725 -31.75683 -31.10082 -28.92787 -27.64955 -26.57181 -24.17608 -23.57918 -23.38354 -22.36379 -21.89270 -21.09038 -19.80603 -18.84524 -18.27481 -17.96700 -17.43537 -16.99251 -16.52336 -16.39877 -16.26661 -16.17060 -15.90292 -15.52954 -15.40329 -15.29086 -15.07534 -14.73196 -14.32062 -14.20227 -14.05910 -13.74599 -13.57444 -13.45013 -12.98092 -12.81323 -12.71227 -12.56545 -12.39541 -12.26863 -12.16474 -12.10096 -11.79257 -11.66689 -11.55641 -11.15592 -10.76924 -10.56836 -9.76602 -9.74041 -9.67817 -9.11682 -8.85583 -8.44931 -6.13035 0.44798 0.56469 0.62389 0.72954 1.35630 1.46282 1.51947 1.56158 2.19138 2.64620 2.69513 2.91280 3.13915 3.35427 3.55419 3.86922 3.97253 4.02985 4.04188 4.11593 4.21736 4.23632 4.26946 4.34855 4.48637 4.51611 4.62740 4.64048 4.69612 4.77438 4.83695 4.88161 4.96128 5.13144 5.17132 5.18122 5.22528 5.32041 5.58572 5.61269 5.68294 5.73044 5.74417 5.82625 5.90739 6.01473 6.03173 6.05461 6.18550 6.25470 6.43321 6.99696 7.30921 7.81370 8.78205 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.002559 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.639877 B =10940.681187 C =11431.620240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.116 3.884 11 C -0.202 4.202 12 C -0.044 4.044 13 C -0.149 4.149 14 C 0.102 3.898 15 N -0.503 5.503 16 C 0.027 3.973 17 C 0.489 3.511 18 N -0.838 5.838 19 O -0.575 6.575 20 C 0.079 3.921 21 C -0.085 4.085 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.128 4.128 25 C -0.128 4.128 26 C -0.112 4.112 27 C -0.062 4.062 28 C -0.238 4.238 29 H 0.272 0.728 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.416 0.584 37 H 0.405 0.595 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.056 -17.792 11.596 26.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.139 6.139 10 C 0.065 3.935 11 C -0.222 4.222 12 C -0.063 4.063 13 C -0.150 4.150 14 C -0.025 4.025 15 N -0.224 5.224 16 C -0.105 4.105 17 C 0.274 3.726 18 N -0.402 5.402 19 O -0.456 6.456 20 C -0.047 4.047 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.146 4.146 26 C -0.131 4.131 27 C -0.080 4.080 28 C -0.258 4.258 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.161 0.839 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.247 0.753 37 H 0.236 0.764 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.099 -18.104 11.214 26.106 hybrid contribution 1.002 1.279 -0.424 1.679 sum 16.101 -16.825 10.790 25.666 Atomic orbital electron populations 1.70180 1.08041 1.28816 1.48964 1.26574 0.96818 1.02710 0.95925 0.84673 0.77414 0.74356 0.79933 1.18296 1.19720 1.17968 1.21764 0.92467 0.81470 1.53180 0.88153 1.83948 1.35916 1.12572 1.81487 1.19899 0.91520 0.87904 0.94135 1.20460 0.99898 0.90597 1.11197 1.20801 0.93215 0.96745 0.95508 1.19550 0.93594 0.94349 1.07492 1.21014 0.98671 0.94369 0.88402 1.62390 1.44498 1.01809 1.13749 1.22424 0.87141 1.00135 1.00796 1.22153 0.88525 0.79071 0.82876 1.43932 1.12498 1.45601 1.38209 1.90649 1.84969 1.39978 1.30031 1.21294 1.01355 0.89075 0.92995 1.19865 0.94441 0.98874 0.95351 1.21119 0.97981 1.01002 0.94330 1.21374 0.98888 0.98863 0.95206 1.21456 0.93310 0.99140 1.00720 1.21442 0.99504 0.99969 0.93649 1.21228 0.97341 0.98342 0.96164 1.20776 0.98821 0.91206 0.97246 1.21160 0.93038 0.99715 1.11839 0.91880 0.86974 0.83886 0.89655 0.92142 0.87818 0.86477 0.75305 0.76365 0.89705 0.91964 0.86705 0.84283 0.84188 0.84542 0.85628 0.85889 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.79 13.67 21.61 0.30 -56.49 16 2 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 3 Si 1.02 42.63 29.55 68.60 2.03 44.65 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.41 -24.03 9.49 67.92 0.64 -23.38 16 8 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 9 O -0.23 -14.06 9.76 -22.77 -0.22 -14.28 16 10 C 0.12 5.78 6.65 22.58 0.15 5.93 16 11 C -0.20 -8.72 9.99 22.39 0.22 -8.49 16 12 C -0.04 -1.53 9.71 22.25 0.22 -1.31 16 13 C -0.15 -4.80 4.91 -19.84 -0.10 -4.89 16 14 C 0.10 2.73 4.79 85.56 0.41 3.14 16 15 N -0.50 -12.00 4.65 -909.94 -4.23 -16.23 16 16 C 0.03 0.57 5.27 85.56 0.45 1.02 16 17 C 0.49 9.98 6.92 87.66 0.61 10.59 16 18 N -0.84 -10.50 8.87 -173.53 -1.54 -12.04 16 19 O -0.58 -15.61 12.54 -3.04 -0.04 -15.65 16 20 C 0.08 1.74 4.81 85.56 0.41 2.15 16 21 C -0.08 -1.71 4.88 -19.86 -0.10 -1.80 16 22 C -0.13 -2.25 7.96 22.27 0.18 -2.07 16 23 C -0.13 -1.91 10.05 22.27 0.22 -1.68 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 26 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 27 C -0.06 -2.16 8.41 22.25 0.19 -1.98 16 28 C -0.24 -10.35 9.17 22.39 0.21 -10.15 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.11 4.80 8.06 -2.92 -0.02 4.78 16 31 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 32 H 0.09 2.10 7.79 -2.39 -0.02 2.09 16 33 H 0.06 1.76 5.31 -2.39 -0.01 1.75 16 34 H 0.10 2.42 6.47 -2.39 -0.02 2.40 16 35 H 0.12 2.15 6.11 -2.39 -0.01 2.14 16 36 H 0.42 3.02 8.83 -92.71 -0.82 2.20 16 37 H 0.40 4.31 8.93 -92.71 -0.83 3.48 16 38 H 0.08 1.75 7.81 -2.39 -0.02 1.73 16 39 H 0.06 1.53 5.36 -2.38 -0.01 1.52 16 40 H 0.11 1.93 7.64 -2.91 -0.02 1.91 16 41 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 Total: -1.00 -75.35 378.46 0.53 -74.82 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.61 Total: 34.48 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 4.84 Total: -39.26 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -5.47 Total: -84.76 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.26 Total: -29.93 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -75.35 0.53 -74.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732807569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.642 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds