Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47164 * 270.00123 * 3 2 1 5 5 H 1.48499 * 109.47014 * 30.00665 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00091 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.47217 * 325.00470 * 16 15 14 18 18 C 1.52994 * 109.47380 * 205.00430 * 16 15 14 19 19 C 1.50703 * 109.47304 * 64.99812 * 18 16 15 20 20 C 1.38231 * 120.00113 * 269.73080 * 19 18 16 21 21 C 1.38239 * 119.99962 * 179.76721 * 20 19 18 22 22 C 1.38235 * 119.99532 * 0.50302 * 21 20 19 23 23 C 1.38229 * 120.00582 * 359.74972 * 22 21 20 24 24 C 1.38235 * 119.99517 * 90.00106 * 19 18 16 25 25 C 1.50703 * 109.47029 * 85.00012 * 16 15 14 26 26 N 1.34772 * 119.99991 * 179.97438 * 25 16 15 27 27 O 1.21279 * 119.99574 * 0.02562 * 25 16 15 28 28 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 29 29 C 1.38105 * 120.06695 * 359.97438 * 28 13 12 30 30 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 32 32 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 33 33 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 34 34 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 35 35 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 36 36 H 1.09005 * 109.47425 * 185.00133 * 18 16 15 37 37 H 1.09004 * 109.47065 * 304.99896 * 18 16 15 38 38 H 1.08002 * 119.99969 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.99692 * 180.22714 * 21 20 19 40 40 H 1.08001 * 119.99706 * 179.72753 * 22 21 20 41 41 H 1.08000 * 120.00450 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00669 * 0.02562 * 24 19 18 43 43 H 0.96997 * 120.00115 * 0.02562 * 26 25 16 44 44 H 0.96997 * 120.00061 * 179.97438 * 26 25 16 45 45 H 1.08001 * 119.96675 * 179.97438 * 28 13 12 46 46 H 1.07996 * 120.03107 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 1 5.1612 -9.3038 1.2474 18 6 5.2038 -9.1813 3.3977 19 6 3.7667 -9.6223 3.5042 20 6 2.8070 -8.7440 3.9713 21 6 1.4879 -9.1471 4.0644 22 6 1.1305 -10.4318 3.7002 23 6 2.0911 -11.3118 3.2381 24 6 3.4093 -10.9071 3.1400 25 6 6.9156 -8.2550 1.8611 26 7 7.8392 -9.2308 1.9656 27 8 7.2618 -7.1126 1.6469 28 6 4.2024 -4.5972 0.2002 29 6 3.4571 -3.4396 0.0917 30 1 -0.4850 0.8401 0.0004 31 1 0.3580 -4.7873 0.2491 32 1 1.6955 -6.8451 0.4322 33 1 3.8311 -7.9148 0.0080 34 1 5.3272 -6.9559 -0.0928 35 1 5.1133 -6.5725 2.2975 36 1 5.8593 -10.0395 3.5460 37 1 5.4108 -8.4301 4.1600 38 1 3.0871 -7.7418 4.2603 39 1 0.7375 -8.4596 4.4259 40 1 0.1008 -10.7481 3.7771 41 1 1.8120 -12.3157 2.9540 42 1 4.1600 -11.5948 2.7796 43 1 7.5623 -10.1444 2.1373 44 1 8.7809 -9.0197 1.8683 45 1 5.2812 -4.5472 0.1899 46 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758143466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = -19.746661 kcal Electronic energy + Delta-G solvation = -28355.619645 eV Core-core repulsion = 24403.276932 eV Total energy + Delta-G solvation = -3952.342713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32328 -39.09931 -38.93972 -36.90001 -35.55891 -34.15592 -32.82045 -32.15310 -30.88885 -30.12120 -29.98047 -27.89478 -25.51082 -24.66017 -23.66198 -22.55600 -21.86732 -21.32274 -20.49945 -20.21985 -18.12463 -17.86882 -17.16233 -16.84821 -16.79812 -15.69670 -15.41004 -15.03709 -14.90650 -14.69069 -14.48182 -14.25894 -14.22923 -13.66517 -13.53987 -13.41439 -13.37044 -13.03472 -12.78184 -12.61061 -12.44144 -12.23266 -11.92782 -11.66035 -11.53357 -11.21445 -11.19580 -10.99777 -10.72472 -10.59424 -10.50338 -10.38460 -10.28806 -10.00392 -9.26240 -8.92423 -8.79282 -8.73809 -8.42175 -8.07836 -7.11144 -6.40321 -3.98847 1.30873 1.41969 2.31913 2.33411 2.37062 3.15965 3.17118 3.21941 3.23232 3.77781 4.00998 4.11465 4.46348 4.68853 4.78642 4.81160 4.89385 4.97702 4.99641 5.13191 5.15946 5.26871 5.35772 5.41741 5.46564 5.57487 5.60580 5.66453 5.87693 5.89940 5.97153 5.99416 6.05008 6.30285 6.41907 6.43790 6.51817 6.53381 6.62260 6.78785 6.85250 6.98956 7.00023 7.06471 7.13077 7.34043 7.38998 7.50702 7.53997 7.91280 7.94958 8.05383 9.05701 9.76755 10.77909 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002618 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.839281 B =10690.995299 C =12305.165213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.157 3.843 11 C -0.196 4.196 12 C -0.050 4.050 13 C -0.182 4.182 14 C 0.118 3.882 15 N -0.651 5.651 16 C 0.072 3.928 17 H 0.104 0.896 18 C -0.063 4.063 19 C -0.070 4.070 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.124 4.124 25 C 0.487 3.513 26 N -0.856 5.856 27 O -0.537 6.537 28 C -0.061 4.061 29 C -0.235 4.235 30 H 0.269 0.731 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.353 0.647 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.400 0.600 44 H 0.398 0.602 45 H 0.105 0.895 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -24.325 7.066 27.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.103 3.897 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.010 4.010 15 N -0.283 5.283 16 C -0.043 4.043 17 H 0.122 0.878 18 C -0.101 4.101 19 C -0.070 4.070 20 C -0.099 4.099 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.142 4.142 25 C 0.270 3.730 26 N -0.420 5.420 27 O -0.412 6.412 28 C -0.080 4.080 29 C -0.254 4.254 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.229 0.771 44 H 0.228 0.772 45 H 0.123 0.877 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.736 -23.596 7.010 26.470 hybrid contribution 1.656 0.771 -0.359 1.862 sum 11.392 -22.825 6.651 26.363 Atomic orbital electron populations 1.70041 1.05936 1.27571 1.46393 1.25272 0.95824 0.98781 0.96641 0.85729 0.78957 0.80176 0.78680 1.19924 1.20273 1.19198 1.21325 0.91791 0.80877 1.52683 0.89120 1.83977 1.34348 1.11458 1.78492 1.19399 0.90261 0.88033 0.92007 1.20201 0.99473 0.90373 1.11475 1.20443 0.92795 0.96566 0.97122 1.19038 0.93489 0.93329 1.12448 1.20664 0.97165 0.95699 0.87490 1.60911 1.46545 1.05095 1.15760 1.21771 0.86975 0.96244 0.99263 0.87796 1.20530 0.93732 1.00234 0.95653 1.19501 0.94851 0.93549 0.99076 1.21050 0.92437 0.99060 0.97400 1.21206 0.96521 0.96057 0.99962 1.21121 0.99203 0.94181 0.99751 1.21026 0.93285 0.99465 1.00658 1.20945 0.96274 0.95720 1.01221 1.22099 0.90280 0.85387 0.75249 1.44011 1.10263 1.11693 1.76067 1.90785 1.82076 1.20591 1.47771 1.20653 0.98281 0.91893 0.97166 1.21123 0.93790 0.98815 1.11714 0.92091 0.86689 0.87180 0.91397 0.94920 0.82541 0.90729 0.90244 0.85733 0.86186 0.86567 0.86614 0.86694 0.77135 0.77171 0.87711 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.39 -11.18 9.49 30.89 0.29 -10.89 16 8 H 0.09 2.42 5.20 -52.48 -0.27 2.15 16 9 O -0.18 -5.24 9.76 0.04 0.00 -5.24 16 10 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.20 -4.26 9.99 -39.39 -0.39 -4.66 16 12 C -0.05 -0.93 9.69 -39.61 -0.38 -1.32 16 13 C -0.18 -3.21 5.40 -104.57 -0.56 -3.78 16 14 C 0.12 1.67 5.50 -4.98 -0.03 1.64 16 15 N -0.65 -8.09 5.48 -109.22 -0.60 -8.69 16 16 C 0.07 0.66 2.38 -68.86 -0.16 0.50 16 17 H 0.10 0.85 7.80 -51.93 -0.40 0.45 16 18 C -0.06 -0.48 4.97 -27.89 -0.14 -0.61 16 19 C -0.07 -0.64 4.95 -104.62 -0.52 -1.16 16 20 C -0.08 -0.88 9.32 -39.58 -0.37 -1.25 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 23 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 25 C 0.49 4.87 7.26 -10.99 -0.08 4.79 16 26 N -0.86 -4.88 8.73 31.22 0.27 -4.60 16 27 O -0.54 -7.96 16.14 5.56 0.09 -7.87 16 28 C -0.06 -1.19 9.69 -39.61 -0.38 -1.58 16 29 C -0.24 -5.33 9.17 -39.40 -0.36 -5.69 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 34 H 0.03 0.49 7.56 -51.93 -0.39 0.09 16 35 H 0.35 5.02 7.74 -39.29 -0.30 4.72 16 36 H 0.07 0.36 7.37 -51.93 -0.38 -0.03 16 37 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.40 1.02 8.19 -40.82 -0.33 0.68 16 44 H 0.40 2.05 8.93 -40.82 -0.36 1.69 16 45 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 46 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -34.24 391.74 -9.73 -43.97 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.11 Total: 11.09 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -5.02 Total: -25.52 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.43 Total: -38.33 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.24 -9.73 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758143466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.222 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds