Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47164 * 270.00123 * 3 2 1 5 5 H 1.48499 * 109.47014 * 30.00665 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00091 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.47217 * 325.00470 * 16 15 14 18 18 C 1.52994 * 109.47380 * 205.00430 * 16 15 14 19 19 C 1.50703 * 109.47304 * 64.99812 * 18 16 15 20 20 C 1.38231 * 120.00113 * 269.73080 * 19 18 16 21 21 C 1.38239 * 119.99962 * 179.76721 * 20 19 18 22 22 C 1.38235 * 119.99532 * 0.50302 * 21 20 19 23 23 C 1.38229 * 120.00582 * 359.74972 * 22 21 20 24 24 C 1.38235 * 119.99517 * 90.00106 * 19 18 16 25 25 C 1.50703 * 109.47029 * 85.00012 * 16 15 14 26 26 N 1.34772 * 119.99991 * 179.97438 * 25 16 15 27 27 O 1.21279 * 119.99574 * 0.02562 * 25 16 15 28 28 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 29 29 C 1.38105 * 120.06695 * 359.97438 * 28 13 12 30 30 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 32 32 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 33 33 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 34 34 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 35 35 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 36 36 H 1.09005 * 109.47425 * 185.00133 * 18 16 15 37 37 H 1.09004 * 109.47065 * 304.99896 * 18 16 15 38 38 H 1.08002 * 119.99969 * 359.97438 * 20 19 18 39 39 H 1.08000 * 119.99692 * 180.22714 * 21 20 19 40 40 H 1.08001 * 119.99706 * 179.72753 * 22 21 20 41 41 H 1.08000 * 120.00450 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00669 * 0.02562 * 24 19 18 43 43 H 0.96997 * 120.00115 * 0.02562 * 26 25 16 44 44 H 0.96997 * 120.00061 * 179.97438 * 26 25 16 45 45 H 1.08001 * 119.96675 * 179.97438 * 28 13 12 46 46 H 1.07996 * 120.03107 * 179.97438 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 1 5.1612 -9.3038 1.2474 18 6 5.2038 -9.1813 3.3977 19 6 3.7667 -9.6223 3.5042 20 6 2.8070 -8.7440 3.9713 21 6 1.4879 -9.1471 4.0644 22 6 1.1305 -10.4318 3.7002 23 6 2.0911 -11.3118 3.2381 24 6 3.4093 -10.9071 3.1400 25 6 6.9156 -8.2550 1.8611 26 7 7.8392 -9.2308 1.9656 27 8 7.2618 -7.1126 1.6469 28 6 4.2024 -4.5972 0.2002 29 6 3.4571 -3.4396 0.0917 30 1 -0.4850 0.8401 0.0004 31 1 0.3580 -4.7873 0.2491 32 1 1.6955 -6.8451 0.4322 33 1 3.8311 -7.9148 0.0080 34 1 5.3272 -6.9559 -0.0928 35 1 5.1133 -6.5725 2.2975 36 1 5.8593 -10.0395 3.5460 37 1 5.4108 -8.4301 4.1600 38 1 3.0871 -7.7418 4.2603 39 1 0.7375 -8.4596 4.4259 40 1 0.1008 -10.7481 3.7771 41 1 1.8120 -12.3157 2.9540 42 1 4.1600 -11.5948 2.7796 43 1 7.5623 -10.1444 2.1373 44 1 8.7809 -9.0197 1.8683 45 1 5.2812 -4.5472 0.1899 46 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758143466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = -43.757042 kcal Electronic energy + Delta-G solvation = -28356.660813 eV Core-core repulsion = 24403.276932 eV Total energy + Delta-G solvation = -3953.383881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15978 -40.69622 -39.79161 -38.55293 -36.61402 -34.94532 -34.32139 -33.52951 -31.78782 -31.56991 -31.24778 -28.99075 -27.43085 -25.66583 -24.79016 -23.60665 -23.25324 -22.09559 -21.88628 -21.09330 -19.84203 -18.95451 -18.64491 -17.82108 -17.48504 -16.69111 -16.45115 -16.29397 -16.19275 -15.88283 -15.60080 -15.55569 -15.44370 -15.16451 -15.10711 -14.65892 -14.32279 -14.08804 -13.96980 -13.76866 -13.64555 -13.51460 -13.19315 -13.04872 -12.81951 -12.39958 -12.34548 -12.30433 -12.14917 -11.96068 -11.88959 -11.64775 -11.19645 -11.13073 -10.80119 -10.63790 -9.77599 -9.63681 -9.49924 -9.34322 -8.89841 -8.47836 -6.15884 0.60757 0.61808 0.67878 0.71986 1.33428 1.42690 1.51041 1.60483 2.17044 2.60502 2.77405 3.07359 3.09398 3.40638 3.52628 3.86608 4.01505 4.06831 4.13069 4.14881 4.21476 4.24456 4.33380 4.37507 4.47967 4.52948 4.61686 4.64752 4.72942 4.81056 4.82924 4.96552 5.01597 5.09831 5.15220 5.30820 5.33854 5.36578 5.57740 5.71637 5.74926 5.81881 5.83116 5.86558 5.91308 6.02081 6.02660 6.23671 6.30671 6.32639 6.49959 6.96932 7.34325 7.77882 8.75494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002618 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.839281 B =10690.995299 C =12305.165213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.098 0.902 9 O -0.232 6.232 10 C 0.117 3.883 11 C -0.203 4.203 12 C -0.041 4.041 13 C -0.154 4.154 14 C 0.125 3.875 15 N -0.656 5.656 16 C 0.077 3.923 17 H 0.125 0.875 18 C -0.057 4.057 19 C -0.073 4.073 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.131 4.131 24 C -0.120 4.120 25 C 0.487 3.513 26 N -0.832 5.832 27 O -0.591 6.591 28 C -0.063 4.063 29 C -0.244 4.244 30 H 0.273 0.727 31 H 0.113 0.887 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.342 0.658 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.149 0.851 43 H 0.419 0.581 44 H 0.404 0.596 45 H 0.123 0.877 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.395 -28.095 7.162 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.115 0.885 9 O -0.138 6.138 10 C 0.066 3.934 11 C -0.223 4.223 12 C -0.059 4.059 13 C -0.155 4.155 14 C -0.004 4.004 15 N -0.286 5.286 16 C -0.037 4.037 17 H 0.143 0.857 18 C -0.095 4.095 19 C -0.073 4.073 20 C -0.121 4.121 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.138 4.138 25 C 0.270 3.730 26 N -0.396 5.396 27 O -0.472 6.472 28 C -0.081 4.081 29 C -0.263 4.263 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.162 0.838 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.167 0.833 43 H 0.251 0.749 44 H 0.235 0.765 45 H 0.141 0.859 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.417 -27.487 7.120 30.991 hybrid contribution 0.961 1.504 -0.324 1.814 sum 13.379 -25.983 6.796 30.005 Atomic orbital electron populations 1.70181 1.07955 1.28794 1.48920 1.26566 0.96862 1.02639 0.95858 0.84608 0.77751 0.74668 0.79305 1.18696 1.19329 1.17954 1.21792 0.92407 0.81560 1.53267 0.88452 1.83939 1.35850 1.12546 1.81502 1.19901 0.91365 0.88020 0.94071 1.20460 0.99922 0.90516 1.11363 1.20780 0.93073 0.96668 0.95391 1.19534 0.93649 0.94401 1.07884 1.20618 0.96599 0.94184 0.88960 1.60869 1.47761 1.05964 1.14020 1.21846 0.86142 0.94845 1.00849 0.85745 1.20543 0.93526 1.01199 0.94193 1.19651 0.95124 0.93786 0.98737 1.21079 0.93129 0.99025 0.98826 1.21310 0.96648 0.96877 1.01106 1.21343 1.00285 0.93932 0.99852 1.21378 0.93403 1.00250 0.99837 1.21317 0.96861 0.95597 0.99998 1.22149 0.91008 0.85084 0.74712 1.43803 1.10043 1.11941 1.73861 1.90775 1.82798 1.22890 1.50697 1.20877 0.99098 0.91529 0.96626 1.21179 0.93228 0.99709 1.12163 0.91796 0.86843 0.83779 0.89147 0.95094 0.83800 0.86983 0.91344 0.87307 0.86797 0.85564 0.84398 0.83344 0.74879 0.76469 0.85879 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.86 13.67 21.61 0.30 -57.57 16 2 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 3 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.41 -25.09 9.49 67.92 0.64 -24.44 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.48 16 9 O -0.23 -14.48 9.76 -22.78 -0.22 -14.70 16 10 C 0.12 6.10 6.65 22.58 0.15 6.25 16 11 C -0.20 -9.06 9.99 22.39 0.22 -8.84 16 12 C -0.04 -1.44 9.69 22.25 0.22 -1.23 16 13 C -0.15 -5.15 5.40 -19.83 -0.11 -5.26 16 14 C 0.12 3.14 5.50 85.56 0.47 3.61 16 15 N -0.66 -14.65 5.48 -499.47 -2.74 -17.38 16 16 C 0.08 1.12 2.38 44.17 0.11 1.23 16 17 H 0.12 1.36 7.80 -2.38 -0.02 1.34 16 18 C -0.06 -0.64 4.97 29.85 0.15 -0.49 16 19 C -0.07 -1.11 4.95 -19.87 -0.10 -1.21 16 20 C -0.10 -2.11 9.32 22.27 0.21 -1.90 16 21 C -0.14 -2.92 10.05 22.27 0.22 -2.70 16 22 C -0.14 -2.37 10.05 22.27 0.22 -2.14 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.60 16 24 C -0.12 -1.46 9.70 22.27 0.22 -1.24 16 25 C 0.49 8.20 7.26 87.66 0.64 8.84 16 26 N -0.83 -6.10 8.73 -173.54 -1.52 -7.62 16 27 O -0.59 -16.53 16.14 -3.02 -0.05 -16.58 16 28 C -0.06 -2.41 9.69 22.25 0.22 -2.19 16 29 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 32 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 33 H 0.09 1.94 8.00 -2.39 -0.02 1.92 16 34 H 0.03 0.82 7.56 -2.39 -0.02 0.80 16 35 H 0.34 9.24 7.74 -89.70 -0.69 8.55 16 36 H 0.11 0.44 7.37 -2.38 -0.02 0.42 16 37 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 38 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.11 2.33 8.06 -2.91 -0.02 2.30 16 40 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 42 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 43 H 0.42 -0.07 8.19 -92.71 -0.76 -0.83 16 44 H 0.40 2.74 8.93 -92.71 -0.83 1.92 16 45 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.11 5.49 5.64 -2.91 -0.02 5.47 16 Total: -1.00 -81.20 391.74 0.93 -80.27 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: -1.24 Total: 32.48 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 4.37 Total: -45.34 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -3.96 Total: -82.57 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.27 Total: -31.28 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -81.20 0.93 -80.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758143466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.514 kcal (2) G-P(sol) polarization free energy of solvation -81.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds