Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48505 * 109.46907 * 270.00150 * 3 2 1 5 5 H 1.48507 * 109.46956 * 29.99377 * 3 2 1 6 6 H 1.48490 * 109.47426 * 149.99704 * 3 2 1 7 7 C 1.38654 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00152 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00004 * 185.05358 * 9 7 2 11 11 C 1.38898 * 120.07350 * 354.49415 * 10 9 7 12 12 C 1.38075 * 119.93200 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06973 * 359.74810 * 12 11 10 14 14 C 1.38277 * 120.13607 * 0.50618 * 13 12 11 15 15 C 1.50699 * 119.96270 * 179.76706 * 14 13 12 16 16 C 1.50694 * 109.47294 * 269.72378 * 15 14 13 17 17 O 1.21277 * 120.00301 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99980 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00041 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47345 * 179.97438 * 19 18 16 21 21 N 1.46494 * 109.47345 * 179.97438 * 20 19 18 22 22 C 1.39675 * 120.00227 * 179.97438 * 21 20 19 23 23 C 1.38912 * 120.07598 * 180.02562 * 22 21 20 24 24 C 1.38104 * 119.92442 * 179.97438 * 23 22 21 25 25 C 1.38287 * 120.07336 * 359.97438 * 24 23 22 26 26 C 1.38285 * 120.15280 * 0.02562 * 25 24 23 27 27 C 1.38108 * 120.07128 * 359.97438 * 26 25 24 28 28 C 1.38121 * 120.07022 * 359.49381 * 14 13 12 29 29 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03203 * 359.94993 * 11 10 9 31 31 H 1.08003 * 119.96279 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.92674 * 180.27617 * 13 12 11 33 33 H 1.08999 * 109.47002 * 149.72177 * 15 14 13 34 34 H 1.08998 * 109.47508 * 29.72783 * 15 14 13 35 35 H 0.97003 * 120.00028 * 359.97438 * 18 16 15 36 36 H 1.08996 * 109.47007 * 59.99515 * 19 18 16 37 37 H 1.09006 * 109.46717 * 299.99925 * 19 18 16 38 38 H 1.09007 * 109.46944 * 59.99691 * 20 19 18 39 39 H 1.08998 * 109.47428 * 300.00014 * 20 19 18 40 40 H 0.97003 * 119.99929 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.03814 * 359.69851 * 23 22 21 42 42 H 1.08001 * 119.96202 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.92040 * 179.97438 * 25 24 23 44 44 H 1.07995 * 119.96538 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.03124 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.03455 * 180.23817 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4057 -0.1050 11 6 3.2234 -3.5746 -0.0926 12 6 3.8532 -4.7986 -0.2012 13 6 5.2292 -4.8611 -0.3274 14 6 5.9792 -3.6994 -0.3348 15 6 7.4786 -3.7724 -0.4673 16 6 8.1003 -3.8594 0.9027 17 8 7.3954 -3.8624 1.8895 18 7 9.4399 -3.9339 1.0313 19 6 10.0443 -4.0190 2.3632 20 6 11.5666 -4.0930 2.2287 21 7 12.1709 -4.1775 3.5604 22 6 13.5591 -4.2557 3.6937 23 6 14.1338 -4.3364 4.9558 24 6 15.5067 -4.4141 5.0840 25 6 16.3091 -4.4122 3.9577 26 6 15.7402 -4.3319 2.6998 27 6 14.3680 -4.2540 2.5645 28 6 5.3551 -2.4720 -0.2266 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5263 0.0022 31 1 3.2705 -5.7078 -0.1912 32 1 5.7191 -5.8195 -0.4167 33 1 7.8424 -2.8793 -0.9753 34 1 7.7498 -4.6554 -1.0460 35 1 10.0038 -3.9319 0.2420 36 1 9.6809 -4.9126 2.8706 37 1 9.7728 -3.1364 2.9424 38 1 11.9303 -3.1996 1.7210 39 1 11.8377 -4.9757 1.6496 40 1 11.6070 -4.1799 4.3497 41 1 13.5080 -4.3339 5.8360 42 1 15.9542 -4.4773 6.0649 43 1 17.3825 -4.4726 4.0608 44 1 16.3697 -4.3311 1.8222 45 1 13.9245 -4.1909 1.5817 46 1 5.9412 -1.5649 -0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760574627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = -9.701518 kcal Electronic energy + Delta-G solvation = -26748.332748 eV Core-core repulsion = 22796.425625 eV Total energy + Delta-G solvation = -3951.907123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.06087 -39.67552 -38.93843 -36.91076 -36.42715 -34.54316 -32.45341 -32.20256 -31.29139 -30.61538 -29.43074 -28.12501 -26.69149 -25.14353 -23.90524 -22.55736 -21.80463 -21.71071 -21.15864 -20.16300 -18.04637 -17.69658 -17.28954 -17.04111 -16.43251 -16.19790 -15.99303 -15.53712 -15.29423 -15.08296 -14.53123 -14.37000 -14.11107 -13.94659 -13.84189 -13.71002 -13.53630 -13.46695 -13.38193 -12.62188 -12.53575 -12.24455 -12.21693 -12.12738 -11.80278 -11.66288 -11.30147 -11.29473 -10.84116 -10.79083 -10.70701 -10.51094 -10.14365 -9.90465 -9.36785 -9.32948 -9.27021 -8.84706 -8.13475 -7.83361 -7.33806 -6.38505 -4.05196 1.09256 1.27091 2.00118 2.30213 2.62961 2.64004 3.23527 3.26692 3.41663 3.42670 3.56457 4.20959 4.26262 4.47530 4.54446 4.58194 4.63654 4.72775 4.85971 4.90587 4.92002 5.08673 5.12113 5.16136 5.20142 5.30366 5.35161 5.42260 5.51737 5.56324 5.66851 5.69560 5.85287 5.92532 6.12804 6.13855 6.15413 6.27015 6.30193 6.46834 6.54329 6.80612 6.91475 7.11364 7.22674 7.24735 7.28016 7.34098 7.62976 7.83505 8.07140 8.16813 8.97024 9.60017 10.69334 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.001628 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.974992 B =17198.154836 C =18074.871746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.037 4.037 15 C -0.092 4.092 16 C 0.515 3.485 17 O -0.516 6.516 18 N -0.737 5.737 19 C 0.110 3.890 20 C 0.116 3.884 21 N -0.746 5.746 22 C 0.217 3.783 23 C -0.195 4.195 24 C -0.073 4.073 25 C -0.181 4.181 26 C -0.073 4.073 27 C -0.198 4.198 28 C -0.175 4.175 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.403 0.597 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.290 -10.214 3.012 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.108 3.892 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.037 4.037 15 C -0.132 4.132 16 C 0.301 3.699 17 O -0.389 6.389 18 N -0.392 5.392 19 C -0.015 4.015 20 C -0.009 4.009 21 N -0.376 5.376 22 C 0.114 3.886 23 C -0.218 4.218 24 C -0.092 4.092 25 C -0.201 4.201 26 C -0.092 4.092 27 C -0.221 4.221 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.238 0.762 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 29.548 -9.825 3.572 31.343 hybrid contribution 0.158 0.645 -0.026 0.664 sum 29.706 -9.181 3.545 31.294 Atomic orbital electron populations 1.69647 1.05529 1.28402 1.48345 1.24450 0.95013 0.98754 0.95766 0.86193 0.80384 0.81516 0.78882 1.19916 1.20805 1.18394 1.20765 0.76915 0.96619 1.52118 0.87654 1.83568 1.22582 1.25648 1.80661 1.19013 0.91523 0.85559 0.93080 1.21301 1.01148 0.91959 1.09171 1.20740 0.94147 0.96741 0.97807 1.20418 0.93939 0.96411 1.09936 1.18647 0.91985 0.93054 1.00062 1.20575 0.93901 1.04677 0.94059 1.20797 0.81235 0.75688 0.92155 1.90777 1.61066 1.47093 1.39962 1.45824 1.07335 1.77734 1.08353 1.21306 0.91082 1.03180 0.85888 1.21397 0.92112 1.01802 0.85598 1.44427 1.03307 1.82421 1.07487 1.17799 0.83282 0.93624 0.93900 1.20620 0.95491 1.10300 0.95376 1.20894 0.92904 0.96815 0.98569 1.20926 0.99632 1.06984 0.92602 1.20915 0.94168 0.96712 0.97399 1.20659 0.93770 1.10532 0.97131 1.19937 0.91997 0.96974 1.10498 0.91114 0.84974 0.87155 0.87724 0.88125 0.88167 0.76540 0.90941 0.90870 0.91531 0.91560 0.76226 0.86231 0.86201 0.86522 0.86239 0.86228 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.78 13.96 55.48 0.77 -25.01 16 2 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 3 Si 0.90 22.04 28.62 -169.99 -4.86 17.18 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 8 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 9 O -0.22 -5.95 8.59 0.06 0.00 -5.95 16 10 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 11 C -0.22 -4.84 9.17 -39.40 -0.36 -5.20 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.19 -3.24 9.70 -39.54 -0.38 -3.62 16 14 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.09 -1.08 5.83 -29.04 -0.17 -1.25 16 16 C 0.51 6.63 7.82 -10.99 -0.09 6.54 16 17 O -0.52 -9.38 16.03 5.56 0.09 -9.29 16 18 N -0.74 -6.14 5.56 -60.30 -0.33 -6.48 16 19 C 0.11 0.87 5.79 -4.04 -0.02 0.84 16 20 C 0.12 0.67 5.03 -4.05 -0.02 0.65 16 21 N -0.75 -4.98 5.73 -58.64 -0.34 -5.32 16 22 C 0.22 1.70 6.65 -83.79 -0.56 1.15 16 23 C -0.20 -1.47 9.90 -39.38 -0.39 -1.86 16 24 C -0.07 -0.51 10.04 -39.61 -0.40 -0.91 16 25 C -0.18 -1.26 10.04 -39.55 -0.40 -1.66 16 26 C -0.07 -0.51 10.04 -39.61 -0.40 -0.91 16 27 C -0.20 -1.48 9.31 -39.38 -0.37 -1.85 16 28 C -0.17 -3.57 9.65 -39.39 -0.38 -3.95 16 29 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.13 3.08 5.64 -52.49 -0.30 2.78 16 31 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.40 1.95 8.47 -40.82 -0.35 1.60 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.36 7.95 -51.92 -0.41 -0.05 16 39 H 0.07 0.34 7.95 -51.93 -0.41 -0.07 16 40 H 0.40 2.37 8.49 -40.82 -0.35 2.03 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 43 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.73 6.74 -52.48 -0.35 0.38 16 46 H 0.11 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -34.83 393.10 -9.81 -44.65 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.23 Total: 4.85 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -4.83 Total: -20.56 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.10 Total: -36.80 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.09 Total: -15.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.83 -9.81 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760574627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.946 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds