Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00150 * 2 1 4 4 H 1.48505 * 109.46907 * 270.00150 * 3 2 1 5 5 H 1.48507 * 109.46956 * 29.99377 * 3 2 1 6 6 H 1.48490 * 109.47426 * 149.99704 * 3 2 1 7 7 C 1.38654 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00057 * 359.97438 * 7 2 1 9 9 O 1.34829 * 120.00152 * 180.02562 * 7 2 1 10 10 C 1.35749 * 117.00004 * 185.05358 * 9 7 2 11 11 C 1.38898 * 120.07350 * 354.49415 * 10 9 7 12 12 C 1.38075 * 119.93200 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06973 * 359.74810 * 12 11 10 14 14 C 1.38277 * 120.13607 * 0.50618 * 13 12 11 15 15 C 1.50699 * 119.96270 * 179.76706 * 14 13 12 16 16 C 1.50694 * 109.47294 * 269.72378 * 15 14 13 17 17 O 1.21277 * 120.00301 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99980 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00041 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47345 * 179.97438 * 19 18 16 21 21 N 1.46494 * 109.47345 * 179.97438 * 20 19 18 22 22 C 1.39675 * 120.00227 * 179.97438 * 21 20 19 23 23 C 1.38912 * 120.07598 * 180.02562 * 22 21 20 24 24 C 1.38104 * 119.92442 * 179.97438 * 23 22 21 25 25 C 1.38287 * 120.07336 * 359.97438 * 24 23 22 26 26 C 1.38285 * 120.15280 * 0.02562 * 25 24 23 27 27 C 1.38108 * 120.07128 * 359.97438 * 26 25 24 28 28 C 1.38121 * 120.07022 * 359.49381 * 14 13 12 29 29 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03203 * 359.94993 * 11 10 9 31 31 H 1.08003 * 119.96279 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.92674 * 180.27617 * 13 12 11 33 33 H 1.08999 * 109.47002 * 149.72177 * 15 14 13 34 34 H 1.08998 * 109.47508 * 29.72783 * 15 14 13 35 35 H 0.97003 * 120.00028 * 359.97438 * 18 16 15 36 36 H 1.08996 * 109.47007 * 59.99515 * 19 18 16 37 37 H 1.09006 * 109.46717 * 299.99925 * 19 18 16 38 38 H 1.09007 * 109.46944 * 59.99691 * 20 19 18 39 39 H 1.08998 * 109.47428 * 300.00014 * 20 19 18 40 40 H 0.97003 * 119.99929 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.03814 * 359.69851 * 23 22 21 42 42 H 1.08001 * 119.96202 * 180.02562 * 24 23 22 43 43 H 1.08004 * 119.92040 * 179.97438 * 25 24 23 44 44 H 1.07995 * 119.96538 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.03124 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.03455 * 180.23817 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4057 -0.1050 11 6 3.2234 -3.5746 -0.0926 12 6 3.8532 -4.7986 -0.2012 13 6 5.2292 -4.8611 -0.3274 14 6 5.9792 -3.6994 -0.3348 15 6 7.4786 -3.7724 -0.4673 16 6 8.1003 -3.8594 0.9027 17 8 7.3954 -3.8624 1.8895 18 7 9.4399 -3.9339 1.0313 19 6 10.0443 -4.0190 2.3632 20 6 11.5666 -4.0930 2.2287 21 7 12.1709 -4.1775 3.5604 22 6 13.5591 -4.2557 3.6937 23 6 14.1338 -4.3364 4.9558 24 6 15.5067 -4.4141 5.0840 25 6 16.3091 -4.4122 3.9577 26 6 15.7402 -4.3319 2.6998 27 6 14.3680 -4.2540 2.5645 28 6 5.3551 -2.4720 -0.2266 29 1 -0.4850 0.8400 -0.0004 30 1 2.1486 -3.5263 0.0022 31 1 3.2705 -5.7078 -0.1912 32 1 5.7191 -5.8195 -0.4167 33 1 7.8424 -2.8793 -0.9753 34 1 7.7498 -4.6554 -1.0460 35 1 10.0038 -3.9319 0.2420 36 1 9.6809 -4.9126 2.8706 37 1 9.7728 -3.1364 2.9424 38 1 11.9303 -3.1996 1.7210 39 1 11.8377 -4.9757 1.6496 40 1 11.6070 -4.1799 4.3497 41 1 13.5080 -4.3339 5.8360 42 1 15.9542 -4.4773 6.0649 43 1 17.3825 -4.4726 4.0608 44 1 16.3697 -4.3311 1.8222 45 1 13.9245 -4.1909 1.5817 46 1 5.9412 -1.5649 -0.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760574627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = -32.881741 kcal Electronic energy + Delta-G solvation = -26749.337918 eV Core-core repulsion = 22796.425625 eV Total energy + Delta-G solvation = -3952.912293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19961 -40.53842 -40.16773 -38.36900 -37.25630 -35.31271 -34.48711 -33.55963 -31.81579 -31.34595 -30.99366 -29.03376 -27.69988 -27.10850 -24.52820 -23.41749 -23.08927 -22.52494 -22.23745 -21.32766 -19.66906 -18.95993 -18.47628 -18.05830 -17.02023 -17.00746 -16.87636 -16.70461 -16.52398 -16.17433 -15.88291 -15.67430 -15.44426 -15.05460 -14.89179 -14.62339 -14.46709 -14.41204 -14.18597 -14.17682 -13.99846 -13.90451 -13.04737 -13.01799 -12.77428 -12.70938 -12.51498 -12.44438 -12.33964 -12.26733 -11.93717 -11.76841 -11.31870 -11.02227 -11.00294 -10.90238 -10.14752 -9.77977 -9.67046 -9.06671 -8.50918 -8.33491 -6.23743 0.48244 0.58439 0.70062 0.75579 1.28831 1.33407 1.50131 1.67522 1.92706 2.26998 2.69554 2.84638 3.05133 3.05275 3.16335 3.66573 3.77153 4.03074 4.06706 4.08072 4.15558 4.17813 4.30644 4.38545 4.44286 4.44835 4.55715 4.66299 4.66851 4.71071 4.71582 4.79194 4.85156 4.94761 4.98847 5.20540 5.24933 5.37413 5.39630 5.43586 5.64921 5.65456 5.72510 5.76339 5.80314 5.91317 5.98719 6.25014 6.42409 6.56531 6.76023 6.83367 7.30054 7.58337 8.60916 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.001628 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.974992 B =17198.154836 C =18074.871746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.247 6.247 10 C 0.117 3.883 11 C -0.241 4.241 12 C -0.079 4.079 13 C -0.171 4.171 14 C -0.030 4.030 15 C -0.089 4.089 16 C 0.515 3.485 17 O -0.579 6.579 18 N -0.714 5.714 19 C 0.114 3.886 20 C 0.127 3.873 21 N -0.748 5.748 22 C 0.204 3.796 23 C -0.212 4.212 24 C -0.083 4.083 25 C -0.193 4.193 26 C -0.082 4.082 27 C -0.210 4.210 28 C -0.181 4.181 29 H 0.285 0.715 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.422 0.578 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.404 0.596 41 H 0.126 0.874 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.434 -11.364 1.780 36.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.068 3.932 11 C -0.260 4.260 12 C -0.097 4.097 13 C -0.189 4.189 14 C -0.030 4.030 15 C -0.128 4.128 16 C 0.302 3.698 17 O -0.458 6.458 18 N -0.368 5.368 19 C -0.011 4.011 20 C 0.002 3.998 21 N -0.379 5.379 22 C 0.101 3.899 23 C -0.234 4.234 24 C -0.102 4.102 25 C -0.213 4.213 26 C -0.100 4.100 27 C -0.233 4.233 28 C -0.201 4.201 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.239 0.761 41 H 0.144 0.856 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 33.767 -11.014 2.298 35.592 hybrid contribution -0.884 0.691 0.358 1.178 sum 32.883 -10.323 2.656 34.568 Atomic orbital electron populations 1.69731 1.06850 1.29572 1.50287 1.25279 0.95905 1.02114 0.95535 0.85215 0.78624 0.77396 0.79438 1.18609 1.19097 1.19170 1.20711 0.78145 0.96123 1.52693 0.90336 1.83504 1.21227 1.27422 1.83388 1.19622 0.93194 0.85134 0.95216 1.21322 1.00167 0.93503 1.11033 1.21121 0.95610 0.96223 0.96760 1.21031 0.93170 0.98462 1.06230 1.19258 0.95379 0.91522 0.96880 1.20703 0.89554 1.08374 0.94169 1.20965 0.82206 0.74878 0.91702 1.90777 1.62719 1.50440 1.41840 1.45569 1.06226 1.75512 1.09531 1.21249 0.92472 1.02003 0.85339 1.21333 0.90208 1.02843 0.85440 1.44464 1.03091 1.82432 1.07940 1.17978 0.83712 0.94010 0.94249 1.20838 0.96019 1.10776 0.95782 1.21171 0.92926 0.96560 0.99524 1.21214 1.00556 1.06806 0.92701 1.21216 0.94413 0.96242 0.98148 1.20897 0.94103 1.10667 0.97606 1.20295 0.90532 0.99119 1.10108 0.90567 0.87614 0.84253 0.83276 0.85237 0.83599 0.73996 0.91866 0.92498 0.90628 0.90192 0.76088 0.85633 0.84753 0.85074 0.84470 0.84941 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.49 13.96 21.61 0.30 -56.19 16 2 C 0.01 0.59 5.49 84.83 0.47 1.05 16 3 Si 0.97 46.77 28.62 68.60 1.96 48.74 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.40 -24.56 9.95 67.92 0.68 -23.88 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -14.13 8.59 -22.71 -0.19 -14.33 16 10 C 0.12 5.80 6.65 22.58 0.15 5.95 16 11 C -0.24 -11.26 9.17 22.39 0.21 -11.05 16 12 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 13 C -0.17 -5.26 9.70 22.30 0.22 -5.04 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 15 C -0.09 -1.62 5.83 29.10 0.17 -1.46 16 16 C 0.51 11.47 7.82 87.65 0.69 12.15 16 17 O -0.58 -20.15 16.03 -3.02 -0.05 -20.20 16 18 N -0.71 -9.17 5.56 -463.06 -2.57 -11.74 16 19 C 0.11 1.55 5.79 86.38 0.50 2.05 16 20 C 0.13 1.11 5.03 86.38 0.43 1.54 16 21 N -0.75 -8.76 5.73 -339.43 -1.95 -10.70 16 22 C 0.20 2.89 6.65 38.21 0.25 3.14 16 23 C -0.21 -2.99 9.90 22.40 0.22 -2.77 16 24 C -0.08 -1.07 10.04 22.25 0.22 -0.85 16 25 C -0.19 -2.38 10.04 22.29 0.22 -2.15 16 26 C -0.08 -0.98 10.04 22.25 0.22 -0.76 16 27 C -0.21 -2.71 9.31 22.40 0.21 -2.50 16 28 C -0.18 -7.30 9.65 22.39 0.22 -7.08 16 29 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 30 H 0.11 5.40 5.64 -2.91 -0.02 5.39 16 31 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.15 1.44 8.08 -2.39 -0.02 1.42 16 35 H 0.42 1.93 8.47 -92.71 -0.79 1.15 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 0.56 7.95 -2.38 -0.02 0.54 16 39 H 0.08 0.52 7.95 -2.39 -0.02 0.50 16 40 H 0.40 4.38 8.49 -92.71 -0.79 3.59 16 41 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.13 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.13 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 45 H 0.13 1.24 6.74 -2.91 -0.02 1.22 16 46 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -82.18 393.10 2.16 -80.03 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -0.55 Total: 19.72 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 5.21 Total: -35.33 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -4.22 Total: -78.63 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.24 Total: -34.52 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.96 Total: 48.74 kcal Total: -82.18 2.16 -80.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760574627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.144 kcal (2) G-P(sol) polarization free energy of solvation -82.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds