Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47315 * 264.72678 * 3 2 1 5 5 H 1.48496 * 109.47263 * 24.73207 * 3 2 1 6 6 H 1.48501 * 109.46960 * 144.73010 * 3 2 1 7 7 C 1.37880 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 4.98852 * 7 2 1 9 9 C 1.50703 * 119.99968 * 184.98745 * 7 2 1 10 10 H 1.09000 * 109.47189 * 25.12978 * 9 7 2 11 11 C 1.53003 * 109.46916 * 145.12539 * 9 7 2 12 12 C 1.50694 * 109.47190 * 294.99766 * 11 9 7 13 13 O 1.21278 * 120.00045 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99530 * 180.27671 * 12 11 9 15 15 C 1.46509 * 119.99504 * 179.72829 * 14 12 11 16 16 C 1.53003 * 109.46640 * 179.97438 * 15 14 12 17 17 H 1.08998 * 109.47188 * 304.99526 * 16 15 14 18 18 O 1.42897 * 109.47191 * 65.00427 * 16 15 14 19 19 C 1.50704 * 109.46879 * 184.99990 * 16 15 14 20 20 C 1.38674 * 120.41755 * 100.00006 * 19 16 15 21 21 C 1.38634 * 118.41795 * 180.02562 * 20 19 16 22 22 C 1.38221 * 119.16077 * 0.02562 * 21 20 19 23 23 N 1.31852 * 120.76573 * 359.97438 * 22 21 20 24 24 C 1.31890 * 121.72445 * 359.71193 * 23 22 21 25 25 C 1.50701 * 109.47050 * 265.12650 * 9 7 2 26 26 C 1.38225 * 120.00085 * 304.69162 * 25 9 7 27 27 C 1.38240 * 120.00085 * 179.81426 * 26 25 9 28 28 C 1.38232 * 119.99672 * 0.39136 * 27 26 25 29 29 C 1.38237 * 120.00249 * 359.85829 * 28 27 26 30 30 C 1.38236 * 119.99804 * 359.96287 * 29 28 27 31 31 H 0.96992 * 120.00227 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.46651 * 175.00165 * 11 9 7 33 33 H 1.08998 * 109.47074 * 55.00458 * 11 9 7 34 34 H 0.96996 * 120.00711 * 359.72331 * 14 12 11 35 35 H 1.08992 * 109.47294 * 299.99889 * 15 14 12 36 36 H 1.08997 * 109.46817 * 60.00342 * 15 14 12 37 37 H 0.96700 * 114.00045 * 59.99264 * 18 16 15 38 38 H 1.07993 * 120.79106 * 359.97438 * 20 19 16 39 39 H 1.07995 * 120.41740 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.61800 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.61639 * 180.30492 * 24 23 22 42 42 H 1.07999 * 120.00447 * 359.97438 * 26 25 9 43 43 H 1.07998 * 120.00092 * 180.23234 * 27 26 25 44 44 H 1.07997 * 119.99805 * 179.83874 * 28 27 26 45 45 H 1.07999 * 120.00168 * 179.97438 * 29 28 27 46 46 H 1.07996 * 119.99773 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6080 1.9821 -1.3942 5 1 1.3953 2.6822 0.5857 6 1 3.4865 1.4748 0.8085 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0823 9 6 3.5072 -1.1966 0.1129 10 1 3.8352 -0.2869 0.6159 11 6 3.9556 -2.4160 0.9210 12 6 3.4492 -2.2953 2.3352 13 8 2.7939 -1.3293 2.6643 14 7 3.7290 -3.2584 3.2356 15 6 3.2418 -3.1381 4.6121 16 6 3.6944 -4.3552 5.4213 17 1 3.3653 -5.2664 4.9219 18 8 5.1197 -4.3560 5.5236 19 6 3.0918 -4.2931 6.8013 20 6 1.9686 -5.0449 7.1114 21 6 1.4484 -4.9558 8.3934 22 6 2.0619 -4.1261 9.3130 23 7 3.1290 -3.4256 8.9828 24 6 3.6546 -3.4902 7.7749 25 6 4.1149 -1.2559 -1.2649 26 6 3.7654 -2.2748 -2.1311 27 6 4.3200 -2.3270 -3.3964 28 6 5.2301 -1.3648 -3.7923 29 6 5.5835 -0.3488 -2.9241 30 6 5.0262 -0.2945 -1.6602 31 1 -0.4850 0.8400 0.0004 32 1 5.0443 -2.4668 0.9281 33 1 3.5525 -3.3211 0.4667 34 1 4.2528 -4.0311 2.9724 35 1 3.6454 -2.2313 5.0624 36 1 2.1529 -3.0887 4.6090 37 1 5.4832 -3.5726 5.9587 38 1 1.5095 -5.6838 6.3717 39 1 0.5748 -5.5274 8.6699 40 1 1.6626 -4.0508 10.3137 41 1 4.5322 -2.9052 7.5427 42 1 3.0572 -3.0286 -1.8205 43 1 4.0441 -3.1209 -4.0745 44 1 5.6653 -1.4070 -4.7798 45 1 6.2949 0.4027 -3.2333 46 1 5.3019 0.4995 -0.9821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793700523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = -54.159442 kcal Electronic energy + Delta-G solvation = -28362.804521 eV Core-core repulsion = 24408.969558 eV Total energy + Delta-G solvation = -3953.834963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43428 -40.70168 -39.82254 -38.45303 -35.94215 -35.15002 -33.80167 -33.67775 -32.48175 -31.60111 -30.74650 -29.32556 -27.59686 -25.20520 -24.58973 -24.05772 -23.26167 -22.60373 -21.69411 -20.75613 -19.03397 -18.71796 -18.16750 -17.66131 -17.64523 -17.21540 -16.59496 -16.50747 -16.13916 -15.93908 -15.62551 -15.39326 -15.29379 -15.04843 -14.77405 -14.60179 -14.37164 -14.14741 -14.02845 -13.91346 -13.76844 -13.45832 -13.29908 -13.08484 -12.84491 -12.72690 -12.52778 -12.05552 -11.88114 -11.81931 -11.47262 -11.42527 -11.00900 -10.83440 -10.74017 -10.53933 -10.39204 -10.01643 -9.97982 -9.62578 -9.30186 -8.22477 -6.18095 0.05086 0.28306 0.68090 0.73404 1.29092 1.32274 1.37925 1.94593 2.29569 2.39038 2.78963 3.08456 3.22218 3.34052 3.41948 3.71260 3.74643 3.84786 4.01492 4.06017 4.13024 4.15852 4.23583 4.31506 4.32330 4.46183 4.50897 4.55803 4.62793 4.71368 4.74605 4.83777 4.85768 4.88442 5.11073 5.13798 5.22179 5.24738 5.38667 5.41408 5.56453 5.69817 5.70549 5.76940 5.83087 6.02610 6.33487 6.36759 6.59696 6.76205 6.80926 6.95431 7.45275 7.56302 8.94914 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.002590 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.562229 B =10808.665226 C =11752.375880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.026 3.974 3 Si 0.918 3.082 4 H -0.266 1.266 5 H -0.300 1.300 6 H -0.251 1.251 7 C -0.462 4.462 8 H 0.036 0.964 9 C 0.048 3.952 10 H 0.036 0.964 11 C -0.111 4.111 12 C 0.509 3.491 13 O -0.562 6.562 14 N -0.721 5.721 15 C 0.097 3.903 16 C 0.165 3.835 17 H 0.130 0.870 18 O -0.554 6.554 19 C -0.176 4.176 20 C -0.071 4.071 21 C -0.169 4.169 22 C 0.085 3.915 23 N -0.513 5.513 24 C 0.095 3.905 25 C -0.064 4.064 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.141 4.141 29 C -0.124 4.124 30 C -0.158 4.158 31 H 0.258 0.742 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.388 0.612 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.178 0.822 41 H 0.166 0.834 42 H 0.112 0.888 43 H 0.140 0.860 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 -12.886 9.594 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.171 4.171 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.227 1.227 6 H -0.175 1.175 7 C -0.499 4.499 8 H 0.055 0.945 9 C 0.029 3.971 10 H 0.055 0.945 11 C -0.151 4.151 12 C 0.297 3.703 13 O -0.439 6.439 14 N -0.376 5.376 15 C -0.027 4.027 16 C 0.105 3.895 17 H 0.148 0.852 18 O -0.361 6.361 19 C -0.179 4.179 20 C -0.097 4.097 21 C -0.188 4.188 22 C -0.071 4.071 23 N -0.221 5.221 24 C -0.062 4.062 25 C -0.065 4.065 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.158 4.158 29 C -0.141 4.141 30 C -0.176 4.176 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.175 0.825 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.183 0.817 42 H 0.130 0.870 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.369 -12.088 10.172 19.464 hybrid contribution -0.745 0.897 -0.199 1.182 sum 10.624 -11.191 9.973 18.374 Atomic orbital electron populations 1.70020 1.07901 1.27066 1.54471 1.25559 0.94998 1.01959 0.94556 0.86182 0.79730 0.80682 0.78842 1.19098 1.22690 1.17547 1.20825 0.90115 0.92446 1.46553 0.94537 1.18155 0.94036 0.95526 0.89400 0.94545 1.21568 1.01710 1.00891 0.90920 1.21065 0.79015 0.82051 0.88183 1.90736 1.39204 1.33422 1.80499 1.45758 1.57061 1.25118 1.09660 1.21927 0.99337 0.98813 0.82666 1.20757 0.80973 0.98161 0.89659 0.85239 1.86610 1.18478 1.48300 1.82741 1.21460 0.98693 0.99915 0.97792 1.21870 0.93679 0.96518 0.97593 1.22506 1.02110 1.00409 0.93811 1.23320 0.91021 0.91578 1.01201 1.67713 1.12224 1.22128 1.20073 1.22767 0.99244 0.95754 0.88442 1.20526 0.93578 0.94463 0.97928 1.21027 0.99386 0.98840 0.94420 1.21414 0.97201 0.99834 0.95709 1.21343 0.98995 0.95074 1.00420 1.21340 1.00300 0.99212 0.93290 1.21214 0.98986 0.99464 0.97921 0.93354 0.87707 0.88520 0.74797 0.92150 0.92761 0.76129 0.82511 0.81692 0.80466 0.81738 0.87031 0.84203 0.83562 0.84230 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.57 13.96 21.45 0.30 -62.27 16 2 C 0.03 1.56 5.47 84.66 0.46 2.02 16 3 Si 0.92 48.47 27.15 68.60 1.86 50.33 16 4 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 6 H -0.25 -12.64 6.06 99.48 0.60 -12.04 16 7 C -0.46 -26.17 6.87 25.60 0.18 -25.99 16 8 H 0.04 2.26 8.06 -2.91 -0.02 2.24 16 9 C 0.05 2.20 1.21 -12.28 -0.01 2.19 16 10 H 0.04 1.81 4.70 -2.39 -0.01 1.80 16 11 C -0.11 -4.00 4.96 29.85 0.15 -3.85 16 12 C 0.51 19.66 7.58 87.66 0.66 20.33 16 13 O -0.56 -28.48 14.98 -3.02 -0.05 -28.53 16 14 N -0.72 -19.53 5.50 -463.06 -2.55 -22.08 16 15 C 0.10 2.40 5.29 86.38 0.46 2.86 16 16 C 0.16 2.79 3.26 29.85 0.10 2.89 16 17 H 0.13 1.87 8.03 -2.39 -0.02 1.85 16 18 O -0.55 -8.90 13.14 -148.98 -1.96 -10.86 16 19 C -0.18 -3.12 4.98 -19.77 -0.10 -3.22 16 20 C -0.07 -1.10 9.82 22.47 0.22 -0.88 16 21 C -0.17 -2.37 10.11 22.36 0.23 -2.15 16 22 C 0.09 1.43 11.18 84.69 0.95 2.37 16 23 N -0.51 -11.06 10.36 -195.85 -2.03 -13.09 16 24 C 0.09 1.82 10.49 84.67 0.89 2.71 16 25 C -0.06 -2.62 4.55 -19.87 -0.09 -2.71 16 26 C -0.12 -4.40 8.87 22.27 0.20 -4.20 16 27 C -0.12 -3.74 10.05 22.27 0.22 -3.52 16 28 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 29 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 30 C -0.16 -5.83 9.43 22.27 0.21 -5.62 16 31 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 32 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.10 3.22 7.86 -2.39 -0.02 3.20 16 34 H 0.41 8.42 8.47 -92.71 -0.79 7.63 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.39 4.33 7.52 -74.06 -0.56 3.78 16 38 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 39 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.17 2.45 6.79 -2.91 -0.02 2.43 16 42 H 0.11 4.21 7.80 -2.91 -0.02 4.19 16 43 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 44 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 45 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 46 H 0.11 3.90 7.95 -2.91 -0.02 3.88 16 Total: -1.00 -83.70 387.85 0.31 -83.38 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.43 Total: 27.06 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 5.16 Total: -23.94 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.28 Total: -97.44 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -2.00 Total: -39.39 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.86 Total: 50.33 kcal Total: -83.70 0.31 -83.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793700523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.225 kcal (2) G-P(sol) polarization free energy of solvation -83.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds