Wall clock time and date at job start Sat Apr 11 2020 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41390 * 120.00240 * 343.60504 * 7 2 1 10 10 C 1.40731 * 120.24529 * 334.07253 * 9 7 2 11 11 C 1.37600 * 119.74693 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24725 * 359.72258 * 11 10 9 13 13 C 1.38610 * 120.50206 * 0.55858 * 12 11 10 14 14 C 1.37638 * 120.24893 * 359.43965 * 13 12 11 15 15 C 1.50695 * 120.13205 * 180.29944 * 14 13 12 16 16 C 1.50701 * 109.47312 * 265.00032 * 15 14 13 17 17 O 1.21278 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99971 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99727 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.46831 * 325.00442 * 19 18 16 21 21 C 1.52997 * 109.46877 * 85.00430 * 19 18 16 22 22 O 1.42901 * 109.47312 * 65.00000 * 21 19 18 23 23 C 1.52996 * 109.46870 * 205.00285 * 19 18 16 24 24 C 1.50704 * 109.47404 * 64.99980 * 23 19 18 25 25 C 1.38651 * 120.79000 * 269.71988 * 24 23 19 26 26 C 1.38199 * 119.15763 * 179.79501 * 25 24 23 27 27 N 1.31868 * 120.76740 * 0.48830 * 26 25 24 28 28 C 1.31864 * 121.72587 * 359.73866 * 27 26 25 29 29 C 1.38206 * 120.76645 * 0.02782 * 28 27 26 30 30 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.12797 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87553 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.75147 * 180.29721 * 12 11 10 34 34 H 1.08002 * 119.88175 * 179.72005 * 13 12 11 35 35 H 1.09003 * 109.46998 * 25.00406 * 15 14 13 36 36 H 1.09006 * 109.47413 * 145.00226 * 15 14 13 37 37 H 0.96996 * 120.00293 * 0.02562 * 18 16 15 38 38 H 1.09000 * 109.46728 * 184.99929 * 21 19 18 39 39 H 1.09002 * 109.47356 * 304.99677 * 21 19 18 40 40 H 0.96696 * 113.99711 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.47263 * 184.99904 * 23 19 18 42 42 H 1.09004 * 109.47215 * 304.99887 * 23 19 18 43 43 H 1.07998 * 120.41741 * 0.02562 * 25 24 23 44 44 H 1.08006 * 119.61496 * 180.20353 * 26 25 24 45 45 H 1.08004 * 119.62201 * 179.97438 * 28 27 26 46 46 H 1.07996 * 120.41782 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4117 0.3445 10 6 0.2136 -2.3807 1.1821 11 6 -0.4242 -3.5545 1.5118 12 6 0.0395 -4.7641 1.0175 13 6 1.1555 -4.8072 0.1964 14 6 1.8092 -3.6455 -0.1465 15 6 3.0182 -3.6948 -1.0448 16 6 4.2682 -3.7242 -0.2036 17 8 4.1855 -3.7073 1.0063 18 7 5.4781 -3.7703 -0.7957 19 6 6.6933 -3.7994 0.0221 20 1 6.5440 -3.1941 0.9162 21 6 7.0000 -5.2422 0.4284 22 8 7.3099 -6.0096 -0.7366 23 6 7.8648 -3.2369 -0.7851 24 6 7.6179 -1.7798 -1.0803 25 6 6.9532 -1.3921 -2.2337 26 6 6.7411 -0.0468 -2.4687 27 7 7.1711 0.8628 -1.6163 28 6 7.8107 0.5309 -0.5120 29 6 8.0550 -0.7949 -0.2078 30 1 -0.4851 0.8400 0.0004 31 1 -0.1515 -1.4393 1.5653 32 1 -1.2917 -3.5332 2.1547 33 1 -0.4701 -5.6801 1.2775 34 1 1.5108 -5.7553 -0.1793 35 1 2.9751 -4.5914 -1.6631 36 1 3.0317 -2.8124 -1.6847 37 1 5.5443 -3.7841 -1.7633 38 1 7.8514 -5.2549 1.1089 39 1 6.1307 -5.6722 0.9261 40 1 7.5156 -6.9365 -0.5537 41 1 8.7851 -3.3401 -0.2101 42 1 7.9580 -3.7866 -1.7217 43 1 6.6023 -2.1322 -2.9376 44 1 6.2212 0.2633 -3.3632 45 1 8.1483 1.3041 0.1623 46 1 8.5798 -1.0604 0.6980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793948965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:41 Heat of formation + Delta-G solvation = -42.382556 kcal Electronic energy + Delta-G solvation = -29712.496497 eV Core-core repulsion = 25759.172218 eV Total energy + Delta-G solvation = -3953.324279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31783 -39.32016 -37.70286 -36.86691 -35.15455 -33.57539 -32.95028 -31.71706 -31.18016 -29.98362 -29.39135 -26.82706 -26.47498 -24.93550 -23.46508 -22.58093 -21.30953 -20.87444 -20.24565 -19.29725 -17.66232 -17.14363 -16.78429 -16.41654 -16.22125 -15.79870 -15.58497 -15.27028 -15.01789 -14.47298 -14.17605 -14.15339 -13.72502 -13.63014 -13.52943 -13.08464 -12.99229 -12.81007 -12.58912 -12.51948 -11.81598 -11.64705 -11.57074 -11.50527 -11.33449 -11.11396 -10.97525 -10.93397 -10.63278 -10.33540 -10.19783 -9.52216 -9.44440 -9.44028 -9.33153 -9.14199 -9.12445 -9.09478 -8.69272 -7.27343 -7.24916 -6.69415 -4.29649 1.17077 1.26283 2.82268 3.00896 3.13067 3.21320 3.30853 3.35669 3.63010 3.83058 3.99711 4.18145 4.44075 4.52551 4.70026 4.70750 4.82930 5.06984 5.13890 5.17125 5.25344 5.29691 5.44768 5.55020 5.67819 5.71789 5.77429 5.83401 5.93103 6.01589 6.07821 6.19970 6.31253 6.32171 6.47385 6.54468 6.72524 6.81496 6.84326 7.13508 7.33556 7.45515 7.46368 7.68347 7.92718 8.00005 8.02576 8.12366 8.17047 8.36012 8.69613 8.89332 8.96736 9.05942 10.24674 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.005156 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.787835 B = 5429.320544 C = 8085.916675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.078 3.922 3 Si 0.898 3.102 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.073 0.927 9 C 0.129 3.871 10 C -0.159 4.159 11 C -0.107 4.107 12 C -0.240 4.240 13 C -0.081 4.081 14 C -0.180 4.180 15 C -0.070 4.070 16 C 0.518 3.482 17 O -0.524 6.524 18 N -0.731 5.731 19 C 0.157 3.843 20 H 0.099 0.901 21 C 0.064 3.936 22 O -0.569 6.569 23 C -0.084 4.084 24 C -0.035 4.035 25 C -0.164 4.164 26 C 0.103 3.897 27 N -0.489 5.489 28 C 0.100 3.900 29 C -0.172 4.172 30 H 0.278 0.722 31 H 0.116 0.884 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.396 0.604 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.376 0.624 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.154 0.846 45 H 0.152 0.848 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.290 -5.269 -4.020 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.179 4.179 11 C -0.126 4.126 12 C -0.260 4.260 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.110 4.110 16 C 0.306 3.694 17 O -0.398 6.398 18 N -0.385 5.385 19 C 0.051 3.949 20 H 0.117 0.883 21 C -0.015 4.015 22 O -0.374 6.374 23 C -0.121 4.121 24 C -0.043 4.043 25 C -0.183 4.183 26 C -0.053 4.053 27 N -0.198 5.198 28 C -0.057 4.057 29 C -0.192 4.192 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.230 0.770 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.223 0.777 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.150 0.850 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.752 -3.615 -3.601 16.558 hybrid contribution 0.522 -0.642 0.153 0.841 sum 16.274 -4.256 -3.448 17.171 Atomic orbital electron populations 1.69828 1.07446 1.28914 1.35910 1.25851 0.94651 1.01069 0.92313 0.86410 0.81349 0.81429 0.78558 1.18304 1.19969 1.19776 1.19473 0.97130 0.90912 1.40774 0.90876 1.17338 0.90734 0.91277 0.87982 1.21285 0.99076 0.96624 1.00880 1.20668 0.98668 0.93485 0.99759 1.20288 1.01519 0.96137 1.08031 1.20284 0.95914 0.95492 0.98270 1.19047 0.99296 0.93995 1.05839 1.20253 0.90606 1.02671 0.97477 1.21231 0.84388 0.74402 0.89428 1.90666 1.86786 1.47633 1.14747 1.46086 1.04988 1.77728 1.09738 1.20868 0.84548 0.93876 0.95616 0.88297 1.22674 0.99233 0.92328 0.87261 1.86440 1.92324 1.25391 1.33271 1.20832 0.98207 0.90714 1.02372 1.20232 0.94655 0.95788 0.93672 1.21994 1.00391 0.97689 0.98273 1.22757 0.95519 0.89200 0.97853 1.67651 1.09693 1.38831 1.03613 1.22713 0.94186 0.94992 0.93781 1.22012 1.02632 0.94026 1.00544 0.91065 0.86605 0.89646 0.89746 0.89872 0.90700 0.88713 0.77014 0.93173 0.92570 0.77735 0.89513 0.89134 0.84991 0.82836 0.83050 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 10.97 55.55 0.61 -20.36 16 2 C 0.08 2.02 5.16 -17.34 -0.09 1.93 16 3 Si 0.90 19.81 29.59 -169.99 -5.03 14.78 16 4 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.45 -12.15 8.14 -37.75 -0.31 -12.46 16 8 H 0.07 1.94 6.68 -52.48 -0.35 1.59 16 9 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 10 C -0.16 -4.33 8.68 -38.87 -0.34 -4.66 16 11 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.24 -5.67 10.05 -39.29 -0.39 -6.07 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 14 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 15 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 16 C 0.52 9.93 7.43 -10.98 -0.08 9.85 16 17 O -0.52 -12.29 15.70 5.56 0.09 -12.20 16 18 N -0.73 -10.43 4.50 -53.81 -0.24 -10.67 16 19 C 0.16 1.95 2.36 -67.93 -0.16 1.79 16 20 H 0.10 1.46 7.58 -51.93 -0.39 1.07 16 21 C 0.06 0.69 6.85 37.16 0.25 0.95 16 22 O -0.57 -5.45 12.83 -35.23 -0.45 -5.90 16 23 C -0.08 -0.82 4.65 -27.88 -0.13 -0.95 16 24 C -0.04 -0.41 4.97 -104.32 -0.52 -0.93 16 25 C -0.16 -1.94 9.27 -39.44 -0.37 -2.30 16 26 C 0.10 1.38 11.18 -17.55 -0.20 1.19 16 27 N -0.49 -7.39 10.36 -13.25 -0.14 -7.53 16 28 C 0.10 1.31 11.18 -17.55 -0.20 1.12 16 29 C -0.17 -2.02 9.82 -39.44 -0.39 -2.41 16 30 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 31 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 32 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 36 H 0.09 1.86 7.06 -51.93 -0.37 1.50 16 37 H 0.40 4.75 7.95 -40.82 -0.32 4.43 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.38 2.11 9.12 45.56 0.42 2.53 16 41 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.09 0.84 7.69 -51.93 -0.40 0.44 16 43 H 0.13 1.25 7.68 -52.49 -0.40 0.84 16 44 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 45 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 46 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -34.13 388.92 -9.70 -43.83 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -5.50 Total: 13.95 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -4.90 Total: -21.77 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.23 Total: -38.56 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.36 Total: -18.10 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.13 -9.70 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793948965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.450 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds