Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 119.99896 * 2 1 4 4 H 1.48494 * 109.47012 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47407 * 300.00766 * 3 2 1 6 6 H 1.48508 * 109.46756 * 60.00512 * 3 2 1 7 7 C 1.39940 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99736 * 163.61517 * 7 2 1 9 9 C 1.41390 * 120.00240 * 343.60504 * 7 2 1 10 10 C 1.40731 * 120.24529 * 334.07253 * 9 7 2 11 11 C 1.37600 * 119.74693 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24725 * 359.72258 * 11 10 9 13 13 C 1.38610 * 120.50206 * 0.55858 * 12 11 10 14 14 C 1.37638 * 120.24893 * 359.43965 * 13 12 11 15 15 C 1.50695 * 120.13205 * 180.29944 * 14 13 12 16 16 C 1.50701 * 109.47312 * 265.00032 * 15 14 13 17 17 O 1.21278 * 119.99986 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99971 * 179.97438 * 16 15 14 19 19 C 1.46505 * 119.99727 * 180.02562 * 18 16 15 20 20 H 1.08996 * 109.46831 * 325.00442 * 19 18 16 21 21 C 1.52997 * 109.46877 * 85.00430 * 19 18 16 22 22 O 1.42901 * 109.47312 * 65.00000 * 21 19 18 23 23 C 1.52996 * 109.46870 * 205.00285 * 19 18 16 24 24 C 1.50704 * 109.47404 * 64.99980 * 23 19 18 25 25 C 1.38651 * 120.79000 * 269.71988 * 24 23 19 26 26 C 1.38199 * 119.15763 * 179.79501 * 25 24 23 27 27 N 1.31868 * 120.76740 * 0.48830 * 26 25 24 28 28 C 1.31864 * 121.72587 * 359.73866 * 27 26 25 29 29 C 1.38206 * 120.76645 * 0.02782 * 28 27 26 30 30 H 0.97001 * 120.00439 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.12797 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.87553 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.75147 * 180.29721 * 12 11 10 34 34 H 1.08002 * 119.88175 * 179.72005 * 13 12 11 35 35 H 1.09003 * 109.46998 * 25.00406 * 15 14 13 36 36 H 1.09006 * 109.47413 * 145.00226 * 15 14 13 37 37 H 0.96996 * 120.00293 * 0.02562 * 18 16 15 38 38 H 1.09000 * 109.46728 * 184.99929 * 21 19 18 39 39 H 1.09002 * 109.47356 * 304.99677 * 21 19 18 40 40 H 0.96696 * 113.99711 * 179.97438 * 22 21 19 41 41 H 1.08999 * 109.47263 * 184.99904 * 23 19 18 42 42 H 1.09004 * 109.47215 * 304.99887 * 23 19 18 43 43 H 1.07998 * 120.41741 * 0.02562 * 25 24 23 44 44 H 1.08006 * 119.61496 * 180.20353 * 26 25 24 45 45 H 1.08004 * 119.62201 * 179.97438 * 28 27 26 46 46 H 1.07996 * 120.41782 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3464 -0.0006 5 1 1.8834 2.3966 -1.2123 6 1 1.8835 2.3964 1.2127 7 6 2.0079 -1.2119 -0.0005 8 1 3.0550 -1.2308 -0.2644 9 6 1.3441 -2.4117 0.3445 10 6 0.2136 -2.3807 1.1821 11 6 -0.4242 -3.5545 1.5118 12 6 0.0395 -4.7641 1.0175 13 6 1.1555 -4.8072 0.1964 14 6 1.8092 -3.6455 -0.1465 15 6 3.0182 -3.6948 -1.0448 16 6 4.2682 -3.7242 -0.2036 17 8 4.1855 -3.7073 1.0063 18 7 5.4781 -3.7703 -0.7957 19 6 6.6933 -3.7994 0.0221 20 1 6.5440 -3.1941 0.9162 21 6 7.0000 -5.2422 0.4284 22 8 7.3099 -6.0096 -0.7366 23 6 7.8648 -3.2369 -0.7851 24 6 7.6179 -1.7798 -1.0803 25 6 6.9532 -1.3921 -2.2337 26 6 6.7411 -0.0468 -2.4687 27 7 7.1711 0.8628 -1.6163 28 6 7.8107 0.5309 -0.5120 29 6 8.0550 -0.7949 -0.2078 30 1 -0.4851 0.8400 0.0004 31 1 -0.1515 -1.4393 1.5653 32 1 -1.2917 -3.5332 2.1547 33 1 -0.4701 -5.6801 1.2775 34 1 1.5108 -5.7553 -0.1793 35 1 2.9751 -4.5914 -1.6631 36 1 3.0317 -2.8124 -1.6847 37 1 5.5443 -3.7841 -1.7633 38 1 7.8514 -5.2549 1.1089 39 1 6.1307 -5.6722 0.9261 40 1 7.5156 -6.9365 -0.5537 41 1 8.7851 -3.3401 -0.2101 42 1 7.9580 -3.7866 -1.7217 43 1 6.6023 -2.1322 -2.9376 44 1 6.2212 0.2633 -3.3632 45 1 8.1483 1.3041 0.1623 46 1 8.5798 -1.0604 0.6980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793948965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = -65.508899 kcal Electronic energy + Delta-G solvation = -29713.499331 eV Core-core repulsion = 25759.172218 eV Total energy + Delta-G solvation = -3954.327112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33561 -40.66296 -39.29078 -38.08584 -36.11433 -35.51616 -34.13129 -33.38439 -32.09945 -31.38909 -31.06559 -28.38059 -27.48369 -26.82712 -24.39982 -23.61047 -22.83349 -22.51113 -21.50547 -20.95186 -19.08484 -18.53133 -17.84107 -17.61734 -17.32553 -17.21039 -16.80480 -16.46429 -16.38072 -16.13621 -15.54988 -15.41668 -15.07484 -14.83701 -14.61775 -14.53086 -14.39083 -14.32511 -13.78430 -13.54308 -13.40737 -13.31401 -12.93500 -12.82902 -12.78711 -12.58903 -12.50227 -12.41480 -12.18368 -12.16757 -11.32654 -11.21590 -11.05862 -11.00215 -10.69567 -10.43952 -10.41889 -10.07237 -9.91117 -9.22768 -9.15772 -8.62480 -6.30267 0.23935 0.32917 0.97009 1.12917 1.31174 1.43206 1.47060 1.88126 2.15133 2.37985 2.76492 2.87502 3.41357 3.56572 3.64536 3.76168 3.86714 3.94617 4.17001 4.21716 4.26803 4.27915 4.40065 4.41868 4.46191 4.54992 4.62194 4.65856 4.71129 4.80563 4.81436 4.83744 4.91748 5.04259 5.08081 5.13918 5.19105 5.36506 5.39480 5.54580 5.65869 5.77123 5.83061 6.03868 6.16481 6.21546 6.41701 6.68951 6.76249 6.91278 6.98662 7.06800 7.10916 7.48921 8.34142 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.005156 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.787835 B = 5429.320544 C = 8085.916675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.043 3.957 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.476 4.476 8 H 0.066 0.934 9 C 0.096 3.904 10 C -0.193 4.193 11 C -0.118 4.118 12 C -0.240 4.240 13 C -0.091 4.091 14 C -0.184 4.184 15 C -0.071 4.071 16 C 0.521 3.479 17 O -0.575 6.575 18 N -0.711 5.711 19 C 0.152 3.848 20 H 0.073 0.927 21 C 0.074 3.926 22 O -0.574 6.574 23 C -0.069 4.069 24 C -0.044 4.044 25 C -0.167 4.167 26 C 0.079 3.921 27 N -0.524 5.524 28 C 0.078 3.922 29 C -0.175 4.175 30 H 0.285 0.715 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.410 0.590 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.396 0.604 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.157 -7.116 -4.895 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.172 4.172 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.212 4.212 11 C -0.136 4.136 12 C -0.259 4.259 13 C -0.109 4.109 14 C -0.186 4.186 15 C -0.110 4.110 16 C 0.309 3.691 17 O -0.453 6.453 18 N -0.365 5.365 19 C 0.046 3.954 20 H 0.091 0.909 21 C -0.005 4.005 22 O -0.382 6.382 23 C -0.106 4.106 24 C -0.052 4.052 25 C -0.186 4.186 26 C -0.077 4.077 27 N -0.234 5.234 28 C -0.078 4.078 29 C -0.195 4.195 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.245 0.755 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.173 0.827 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.647 -5.488 -4.521 19.026 hybrid contribution -0.042 -0.218 0.415 0.471 sum 17.605 -5.706 -4.106 18.956 Atomic orbital electron populations 1.69872 1.08515 1.29991 1.36728 1.26492 0.95294 1.03615 0.91786 0.85451 0.79051 0.77923 0.79077 1.19674 1.18533 1.19243 1.19538 0.96848 0.91884 1.42324 0.91615 1.17705 0.91353 0.92732 0.88789 1.21288 1.00580 0.96791 1.02580 1.20943 0.99217 0.93380 1.00058 1.20717 1.01437 0.96743 1.07027 1.20722 0.95669 0.96594 0.97961 1.19534 1.00330 0.93381 1.05317 1.20270 0.89519 1.04209 0.97034 1.21000 0.85525 0.74097 0.88520 1.90650 1.87573 1.50417 1.16667 1.45873 1.04352 1.75634 1.10618 1.21015 0.84344 0.95157 0.94841 0.90888 1.22431 0.99245 0.90960 0.87832 1.86383 1.92237 1.26933 1.32627 1.20791 0.97774 0.89126 1.02906 1.20548 0.94307 0.96873 0.93500 1.22285 0.99883 0.97572 0.98878 1.23102 0.96174 0.90019 0.98365 1.67615 1.10933 1.40121 1.04751 1.23109 0.94478 0.96391 0.93816 1.22342 1.02243 0.93573 1.01339 0.90397 0.88680 0.87702 0.86635 0.86574 0.87212 0.88994 0.75398 0.90378 0.95388 0.75480 0.86922 0.87765 0.82685 0.81722 0.81518 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.82 10.97 21.82 0.24 -44.58 16 2 C 0.04 2.26 5.16 85.26 0.44 2.70 16 3 Si 0.96 41.93 29.59 68.60 2.03 43.96 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.48 -26.37 8.14 23.46 0.19 -26.18 16 8 H 0.07 3.61 6.68 -2.91 -0.02 3.59 16 9 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 10 C -0.19 -10.82 8.68 22.73 0.20 -10.63 16 11 C -0.12 -5.86 10.02 22.22 0.22 -5.63 16 12 C -0.24 -10.97 10.05 22.46 0.23 -10.74 16 13 C -0.09 -4.12 9.66 22.22 0.21 -3.91 16 14 C -0.18 -8.90 4.43 -19.40 -0.09 -8.99 16 15 C -0.07 -2.72 5.18 29.10 0.15 -2.57 16 16 C 0.52 19.60 7.43 87.66 0.65 20.25 16 17 O -0.57 -27.22 15.70 -3.02 -0.05 -27.27 16 18 N -0.71 -19.00 4.50 -442.54 -1.99 -20.99 16 19 C 0.15 3.44 2.36 44.99 0.11 3.55 16 20 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 21 C 0.07 1.41 6.85 71.98 0.49 1.91 16 22 O -0.57 -8.85 12.83 -148.98 -1.91 -10.76 16 23 C -0.07 -1.11 4.65 29.85 0.14 -0.97 16 24 C -0.04 -0.93 4.97 -19.67 -0.10 -1.03 16 25 C -0.17 -3.69 9.27 22.36 0.21 -3.48 16 26 C 0.08 2.10 11.18 84.68 0.95 3.05 16 27 N -0.52 -15.92 10.36 -195.84 -2.03 -17.95 16 28 C 0.08 2.03 11.18 84.68 0.95 2.97 16 29 C -0.18 -3.87 9.82 22.36 0.22 -3.65 16 30 H 0.29 14.10 8.30 -92.71 -0.77 13.34 16 31 H 0.10 5.60 6.22 -2.91 -0.02 5.58 16 32 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.12 4.40 8.06 -2.91 -0.02 4.37 16 35 H 0.11 3.37 8.05 -2.39 -0.02 3.35 16 36 H 0.09 3.58 7.06 -2.38 -0.02 3.57 16 37 H 0.41 8.71 7.95 -92.71 -0.74 7.97 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.40 2.95 9.12 -74.06 -0.68 2.28 16 41 H 0.11 1.32 8.10 -2.39 -0.02 1.30 16 42 H 0.10 1.48 7.69 -2.38 -0.02 1.46 16 43 H 0.16 2.54 7.68 -2.91 -0.02 2.52 16 44 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.17 3.49 8.06 -2.91 -0.02 3.46 16 46 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -77.02 388.92 0.95 -76.08 By element: Atomic # 1 Polarization: 40.02 SS G_CDS: -0.39 Total: 39.63 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 5.05 Total: -38.11 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.78 Total: -83.52 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.96 Total: -38.03 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -77.02 0.95 -76.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793948965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.569 kcal (2) G-P(sol) polarization free energy of solvation -77.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds