Wall clock time and date at job start Sat Apr 11 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47156 * 200.80972 * 3 2 1 5 5 N 1.46493 * 109.47481 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00630 * 270.00283 * 5 4 3 7 7 C 1.50696 * 109.47130 * 270.00304 * 6 5 4 8 8 H 1.08007 * 120.00272 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99483 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47014 * 59.99270 * 11 9 7 13 13 H 1.48504 * 109.46947 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46798 * 299.99405 * 11 9 7 15 15 C 1.34778 * 120.00003 * 90.00006 * 5 4 3 16 16 O 1.21279 * 120.00219 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00089 * 0.02562 * 15 5 4 18 18 O 1.45201 * 109.47505 * 180.02562 * 17 15 5 19 19 C 1.34231 * 116.99869 * 180.02562 * 18 17 15 20 20 O 1.20825 * 119.99975 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99819 * 179.97438 * 19 18 17 22 22 F 1.39905 * 109.46943 * 309.99746 * 21 19 18 23 23 C 1.52997 * 109.47078 * 69.99652 * 21 19 18 24 24 C 1.53002 * 109.47143 * 180.02562 * 23 21 19 25 25 C 1.53008 * 109.46800 * 300.00009 * 24 23 21 26 26 C 1.53001 * 109.47105 * 60.00402 * 25 24 23 27 27 C 1.52997 * 109.47265 * 189.99848 * 21 19 18 28 28 H 1.08999 * 109.47455 * 80.80786 * 3 2 1 29 29 H 1.09004 * 109.47247 * 320.81202 * 3 2 1 30 30 H 1.09007 * 109.46770 * 60.00127 * 4 3 2 31 31 H 1.09004 * 109.47231 * 300.00240 * 4 3 2 32 32 H 1.09010 * 109.46703 * 29.99789 * 6 5 4 33 33 H 1.08995 * 109.47419 * 149.99331 * 6 5 4 34 34 H 0.97006 * 119.99594 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47064 * 59.99611 * 17 15 5 36 36 H 1.09007 * 109.47453 * 300.00335 * 17 15 5 37 37 H 1.09004 * 109.47261 * 300.00035 * 23 21 19 38 38 H 1.09002 * 109.47153 * 60.00207 * 23 21 19 39 39 H 1.09000 * 109.47312 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.47067 * 59.99982 * 24 23 21 41 41 H 1.08992 * 109.47290 * 299.99830 * 25 24 23 42 42 H 1.09001 * 109.46630 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.46778 * 179.97438 * 26 25 24 44 44 H 1.08992 * 109.47056 * 59.99291 * 26 25 24 45 45 H 1.09002 * 109.47045 * 299.99841 * 27 21 19 46 46 H 1.09000 * 109.47140 * 59.99748 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.3493 0.5125 5 7 4.5822 1.3498 0.5131 6 6 5.3145 0.8994 1.6993 7 6 5.5649 2.0731 2.6107 8 1 5.2140 3.0564 2.3339 9 6 6.2429 1.8921 3.7976 10 7 6.6705 0.6950 4.1345 11 14 6.5538 3.3472 4.9270 12 1 5.2561 3.9382 5.3415 13 1 7.2960 2.8906 6.1295 14 1 7.3561 4.3692 4.2080 15 6 5.2564 1.7645 -0.5778 16 8 6.4692 1.7645 -0.5775 17 6 4.5033 2.2283 -1.7979 18 8 5.4471 2.6199 -2.8295 19 6 4.9343 3.0610 -3.9889 20 8 3.7365 3.1177 -4.1370 21 6 5.8525 3.4857 -5.1058 22 9 6.8092 4.3777 -4.6093 23 6 6.5542 2.2555 -5.6847 24 6 7.4870 2.6868 -6.8183 25 6 6.6718 3.3729 -7.9164 26 6 5.9702 4.6031 -7.3374 27 6 5.0370 4.1715 -6.2037 28 1 2.9714 -0.1633 -1.0144 29 1 2.9716 -0.7957 0.6494 30 1 2.7539 1.5132 1.5270 31 1 2.7536 2.1456 -0.1369 32 1 4.7255 0.1490 2.2268 33 1 6.2671 0.4657 1.3953 34 1 7.1472 0.5675 4.9697 35 1 3.8765 3.0807 -1.5358 36 1 3.8766 1.4169 -2.1683 37 1 7.1353 1.7669 -4.9025 38 1 5.8089 1.5605 -6.0716 39 1 7.9866 1.8103 -7.2311 40 1 8.2323 3.3816 -6.4311 41 1 5.9266 2.6782 -8.3035 42 1 7.3363 3.6797 -8.7241 43 1 5.3899 5.0921 -8.1198 44 1 6.7155 5.2978 -6.9502 45 1 4.2917 3.4765 -6.5905 46 1 4.5371 5.0479 -5.7912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811249726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:56 Heat of formation + Delta-G solvation = -154.215077 kcal Electronic energy + Delta-G solvation = -29912.814290 eV Core-core repulsion = 25523.871364 eV Total energy + Delta-G solvation = -4388.942926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.18296 -40.80930 -39.29314 -37.97077 -36.95836 -36.50278 -35.31387 -32.96762 -31.47851 -31.25217 -30.94687 -29.34693 -26.85996 -24.59774 -24.11321 -23.25729 -22.75255 -21.21876 -20.00837 -18.97569 -18.29805 -17.76590 -17.28608 -16.87069 -16.52584 -16.31547 -16.01875 -15.77408 -15.46817 -15.06543 -14.77951 -14.56189 -14.37793 -13.91259 -13.86904 -13.72015 -13.65637 -13.09346 -12.87122 -12.73822 -12.68018 -12.51264 -12.49281 -12.24661 -12.23340 -12.10889 -11.82067 -11.51587 -11.34802 -11.21826 -11.10605 -11.01767 -10.98663 -10.76418 -10.66005 -10.52131 -10.40212 -10.23868 -9.79430 -9.18449 -8.51048 -7.99622 -6.13295 -4.18345 1.75809 2.09993 2.67723 2.77575 3.06796 3.28901 3.33648 3.36710 3.48815 3.88924 3.98765 4.04444 4.22441 4.32696 4.39408 4.61741 4.67822 4.74174 4.77911 4.87723 4.89981 4.95547 5.00957 5.08189 5.12260 5.20193 5.22525 5.34082 5.38576 5.53038 5.58758 5.63271 5.70560 5.72791 5.79468 5.81828 5.97498 6.00940 6.07553 6.79439 7.23553 7.29822 7.38313 7.53399 7.82124 8.06023 8.10890 8.68189 8.86971 9.47425 10.94873 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002938 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.085713 B = 9529.189031 C =11291.004387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.247 3.753 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.509 3.491 16 O -0.506 6.506 17 C 0.042 3.958 18 O -0.315 6.315 19 C 0.446 3.554 20 O -0.492 6.492 21 C 0.145 3.855 22 F -0.179 7.179 23 C -0.142 4.142 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.128 4.128 28 H 0.105 0.895 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 2.269 -22.233 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.014 4.014 5 N -0.325 5.325 6 C 0.129 3.871 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.293 3.707 16 O -0.380 6.380 17 C -0.035 4.035 18 O -0.230 6.230 19 C 0.287 3.713 20 O -0.380 6.380 21 C 0.125 3.875 22 F -0.159 7.159 23 C -0.179 4.179 24 C -0.156 4.156 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.165 4.165 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.962 2.183 -22.048 22.507 hybrid contribution 0.366 0.800 0.969 1.309 sum -3.596 2.983 -21.080 21.591 Atomic orbital electron populations 1.81213 1.13002 1.08567 1.09103 1.29029 0.95041 0.93217 0.92956 1.19886 0.81548 1.02575 1.05224 1.21405 0.81936 0.94022 1.04067 1.48163 1.04989 1.64066 1.15267 1.19422 0.92681 0.95415 0.79610 1.21368 1.37153 0.94879 1.03788 0.92322 1.24906 0.95140 0.96007 0.97792 1.69904 1.38022 1.21305 1.23902 0.86558 0.78443 0.82608 0.79852 1.20215 1.21152 1.20081 1.19686 0.88185 0.79433 0.83358 1.90755 1.13199 1.52203 1.81855 1.23093 0.91307 1.02067 0.87024 1.86625 1.39924 1.73802 1.22599 1.24157 0.88903 0.74746 0.83537 1.90686 1.16134 1.50104 1.81038 1.20797 0.86367 0.90813 0.89495 1.92959 1.65001 1.69251 1.88699 1.22192 1.00357 0.95171 1.00217 1.21527 0.97909 1.01347 0.94863 1.21620 0.99416 0.97186 0.97953 1.21565 0.98795 0.98304 0.97152 1.22038 0.98105 1.01991 0.94397 0.87704 0.86166 0.88125 0.90670 0.94279 0.93318 0.92521 0.88279 0.88491 0.88821 0.89423 0.90609 0.90705 0.91589 0.91264 0.90717 0.90899 0.88857 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.48 18.54 42.15 0.78 -5.70 16 2 C 0.22 2.57 15.43 -20.76 -0.32 2.25 16 3 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 4 C 0.11 1.44 5.17 -4.05 -0.02 1.42 16 5 N -0.59 -10.55 2.46 -175.06 -0.43 -10.98 16 6 C 0.25 5.69 5.16 -5.19 -0.03 5.66 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 11 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.51 9.45 7.75 -10.99 -0.09 9.36 16 16 O -0.51 -11.92 16.08 -14.10 -0.23 -12.15 16 17 C 0.04 0.60 4.50 36.00 0.16 0.76 16 18 O -0.32 -4.91 9.75 -45.91 -0.45 -5.36 16 19 C 0.45 5.97 6.91 36.01 0.25 6.21 16 20 O -0.49 -6.94 15.73 -18.75 -0.29 -7.24 16 21 C 0.14 1.58 1.16 -91.78 -0.11 1.47 16 22 F -0.18 -2.31 15.75 2.25 0.04 -2.28 16 23 C -0.14 -1.24 4.98 -26.73 -0.13 -1.38 16 24 C -0.12 -0.84 5.80 -26.73 -0.16 -1.00 16 25 C -0.12 -0.74 5.92 -26.73 -0.16 -0.89 16 26 C -0.12 -0.81 5.80 -26.70 -0.15 -0.97 16 27 C -0.13 -1.10 4.35 -26.71 -0.12 -1.21 16 28 H 0.10 0.85 7.22 -51.93 -0.38 0.47 16 29 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.36 8.07 -51.92 -0.42 0.95 16 31 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 32 H 0.04 0.88 8.07 -51.92 -0.42 0.46 16 33 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.10 1.28 7.39 -51.93 -0.38 0.89 16 36 H 0.10 1.08 7.18 -51.92 -0.37 0.71 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.54 7.80 -51.93 -0.41 0.13 16 45 H 0.09 0.74 7.99 -51.93 -0.41 0.32 16 46 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -33.82 392.91 -7.25 -41.07 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -6.84 Total: -3.26 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.47 Total: 8.31 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 1.09 Total: -41.07 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.97 Total: -24.74 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.82 -7.25 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811249726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.143 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds