Wall clock time and date at job start Sat Apr 11 2020 06:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47156 * 200.80972 * 3 2 1 5 5 N 1.46493 * 109.47481 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00630 * 270.00283 * 5 4 3 7 7 C 1.50696 * 109.47130 * 270.00304 * 6 5 4 8 8 H 1.08007 * 120.00272 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99483 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00101 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47014 * 59.99270 * 11 9 7 13 13 H 1.48504 * 109.46947 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46798 * 299.99405 * 11 9 7 15 15 C 1.34778 * 120.00003 * 90.00006 * 5 4 3 16 16 O 1.21279 * 120.00219 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00089 * 0.02562 * 15 5 4 18 18 O 1.45201 * 109.47505 * 180.02562 * 17 15 5 19 19 C 1.34231 * 116.99869 * 180.02562 * 18 17 15 20 20 O 1.20825 * 119.99975 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.99819 * 179.97438 * 19 18 17 22 22 F 1.39905 * 109.46943 * 309.99746 * 21 19 18 23 23 C 1.52997 * 109.47078 * 69.99652 * 21 19 18 24 24 C 1.53002 * 109.47143 * 180.02562 * 23 21 19 25 25 C 1.53008 * 109.46800 * 300.00009 * 24 23 21 26 26 C 1.53001 * 109.47105 * 60.00402 * 25 24 23 27 27 C 1.52997 * 109.47265 * 189.99848 * 21 19 18 28 28 H 1.08999 * 109.47455 * 80.80786 * 3 2 1 29 29 H 1.09004 * 109.47247 * 320.81202 * 3 2 1 30 30 H 1.09007 * 109.46770 * 60.00127 * 4 3 2 31 31 H 1.09004 * 109.47231 * 300.00240 * 4 3 2 32 32 H 1.09010 * 109.46703 * 29.99789 * 6 5 4 33 33 H 1.08995 * 109.47419 * 149.99331 * 6 5 4 34 34 H 0.97006 * 119.99594 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.47064 * 59.99611 * 17 15 5 36 36 H 1.09007 * 109.47453 * 300.00335 * 17 15 5 37 37 H 1.09004 * 109.47261 * 300.00035 * 23 21 19 38 38 H 1.09002 * 109.47153 * 60.00207 * 23 21 19 39 39 H 1.09000 * 109.47312 * 180.02562 * 24 23 21 40 40 H 1.09002 * 109.47067 * 59.99982 * 24 23 21 41 41 H 1.08992 * 109.47290 * 299.99830 * 25 24 23 42 42 H 1.09001 * 109.46630 * 180.02562 * 25 24 23 43 43 H 1.08996 * 109.46778 * 179.97438 * 26 25 24 44 44 H 1.08992 * 109.47056 * 59.99291 * 26 25 24 45 45 H 1.09002 * 109.47045 * 299.99841 * 27 21 19 46 46 H 1.09000 * 109.47140 * 59.99748 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1173 1.3493 0.5125 5 7 4.5822 1.3498 0.5131 6 6 5.3145 0.8994 1.6993 7 6 5.5649 2.0731 2.6107 8 1 5.2140 3.0564 2.3339 9 6 6.2429 1.8921 3.7976 10 7 6.6705 0.6950 4.1345 11 14 6.5538 3.3472 4.9270 12 1 5.2561 3.9382 5.3415 13 1 7.2960 2.8906 6.1295 14 1 7.3561 4.3692 4.2080 15 6 5.2564 1.7645 -0.5778 16 8 6.4692 1.7645 -0.5775 17 6 4.5033 2.2283 -1.7979 18 8 5.4471 2.6199 -2.8295 19 6 4.9343 3.0610 -3.9889 20 8 3.7365 3.1177 -4.1370 21 6 5.8525 3.4857 -5.1058 22 9 6.8092 4.3777 -4.6093 23 6 6.5542 2.2555 -5.6847 24 6 7.4870 2.6868 -6.8183 25 6 6.6718 3.3729 -7.9164 26 6 5.9702 4.6031 -7.3374 27 6 5.0370 4.1715 -6.2037 28 1 2.9714 -0.1633 -1.0144 29 1 2.9716 -0.7957 0.6494 30 1 2.7539 1.5132 1.5270 31 1 2.7536 2.1456 -0.1369 32 1 4.7255 0.1490 2.2268 33 1 6.2671 0.4657 1.3953 34 1 7.1472 0.5675 4.9697 35 1 3.8765 3.0807 -1.5358 36 1 3.8766 1.4169 -2.1683 37 1 7.1353 1.7669 -4.9025 38 1 5.8089 1.5605 -6.0716 39 1 7.9866 1.8103 -7.2311 40 1 8.2323 3.3816 -6.4311 41 1 5.9266 2.6782 -8.3035 42 1 7.3363 3.6797 -8.7241 43 1 5.3899 5.0921 -8.1198 44 1 6.7155 5.2978 -6.9502 45 1 4.2917 3.4765 -6.5905 46 1 4.5371 5.0479 -5.7912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811249726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:55 Heat of formation + Delta-G solvation = -172.485884 kcal Electronic energy + Delta-G solvation = -29913.606572 eV Core-core repulsion = 25523.871364 eV Total energy + Delta-G solvation = -4389.735207 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.11332 -41.91543 -40.68743 -38.70452 -38.06188 -37.57867 -36.73679 -34.89698 -32.28709 -32.16088 -31.88832 -30.69504 -28.50171 -25.56722 -25.38025 -24.37534 -23.83754 -22.09936 -20.70833 -20.35444 -19.33984 -18.90615 -18.46218 -18.26009 -17.89972 -17.62133 -17.16002 -16.82163 -16.56455 -16.23212 -15.86072 -15.72845 -15.61271 -15.03170 -14.80450 -14.60417 -14.47081 -14.38428 -14.13558 -13.85806 -13.66838 -13.59659 -13.47625 -13.34169 -13.25406 -13.18717 -12.97230 -12.92326 -12.75128 -12.53243 -12.20413 -12.14343 -12.10972 -11.95706 -11.80606 -11.70844 -11.49769 -11.23675 -11.11200 -10.73059 -10.58787 -9.60255 -8.19389 -6.31189 0.73001 1.04531 1.40498 1.43475 1.49682 1.55830 1.76213 1.82353 2.21719 2.43139 2.97033 3.12382 3.14188 3.26890 3.37184 3.51736 3.54358 3.84529 3.94098 4.05090 4.06520 4.09518 4.10575 4.20207 4.31005 4.42530 4.50791 4.59863 4.77144 4.78709 4.91969 4.96673 4.98579 5.00361 5.10303 5.13459 5.14664 5.28291 5.31047 5.31714 5.50012 5.54517 5.81882 6.10134 6.29543 6.55485 6.60662 6.77376 7.22937 7.40890 8.87446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002938 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.085713 B = 9529.189031 C =11291.004387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.039 4.039 4 C 0.106 3.894 5 N -0.588 5.588 6 C 0.261 3.739 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.956 3.044 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.506 3.494 16 O -0.568 6.568 17 C 0.049 3.951 18 O -0.340 6.340 19 C 0.446 3.554 20 O -0.499 6.499 21 C 0.138 3.862 22 F -0.195 7.195 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.124 4.124 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.044 0.956 33 H 0.008 0.992 34 H 0.266 0.734 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 2.689 -24.111 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.073 4.073 3 C -0.080 4.080 4 C -0.018 4.018 5 N -0.320 5.320 6 C 0.140 3.860 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.188 1.188 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.293 3.707 16 O -0.446 6.446 17 C -0.027 4.027 18 O -0.255 6.255 19 C 0.288 3.712 20 O -0.386 6.386 21 C 0.118 3.882 22 F -0.176 7.176 23 C -0.178 4.178 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.162 4.162 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.026 0.974 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.122 0.878 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.368 2.608 -23.939 24.672 hybrid contribution 0.788 0.667 1.546 1.859 sum -4.580 3.275 -22.393 23.090 Atomic orbital electron populations 1.81258 1.14426 1.09991 1.10847 1.29103 0.94919 0.91815 0.91421 1.19842 0.80189 1.00949 1.07039 1.21649 0.78616 0.96695 1.04821 1.47991 1.06948 1.63373 1.13723 1.18905 0.91723 0.94415 0.80923 1.21724 1.36772 0.95552 1.04342 0.92820 1.25684 0.95122 0.98339 0.99407 1.70003 1.38883 1.22993 1.24419 0.85642 0.78698 0.79484 0.78048 1.18780 1.20658 1.20644 1.20422 0.87691 0.78163 0.84451 1.90726 1.16031 1.54730 1.83111 1.23079 0.90491 1.03981 0.85190 1.86629 1.41024 1.74323 1.23529 1.24651 0.89261 0.74166 0.83171 1.90669 1.16428 1.50498 1.81055 1.21190 0.86256 0.91643 0.89093 1.92923 1.65706 1.69909 1.89013 1.22241 1.00817 0.94459 1.00308 1.21552 0.97515 1.01822 0.94665 1.21627 0.99700 0.96856 0.97650 1.21589 0.98470 0.98666 0.96888 1.22089 0.98309 1.01699 0.94070 0.84726 0.85446 0.88806 0.87853 0.93801 0.97375 0.92476 0.86443 0.84639 0.90490 0.87603 0.89104 0.92060 0.90293 0.89932 0.88852 0.91959 0.87755 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.47 18.54 20.00 0.37 -13.09 16 2 C 0.24 5.23 15.43 89.44 1.38 6.61 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.11 2.50 5.17 86.38 0.45 2.95 16 5 N -0.59 -20.67 2.46 -826.16 -2.03 -22.70 16 6 C 0.26 12.27 5.16 85.63 0.44 12.71 16 7 C -0.55 -29.08 9.39 25.60 0.24 -28.83 16 8 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.01 0.77 5.46 84.66 0.46 1.23 16 10 N -0.92 -52.84 13.29 21.45 0.28 -52.56 16 11 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 C 0.51 18.66 7.75 87.66 0.68 19.34 16 16 O -0.57 -27.67 16.08 15.77 0.25 -27.42 16 17 C 0.05 1.30 4.50 71.24 0.32 1.62 16 18 O -0.34 -10.37 9.75 -45.07 -0.44 -10.81 16 19 C 0.45 11.39 6.91 71.24 0.49 11.88 16 20 O -0.50 -12.99 15.73 21.97 0.35 -12.65 16 21 C 0.14 2.88 1.16 -11.54 -0.01 2.87 16 22 F -0.19 -5.10 15.75 44.97 0.71 -4.39 16 23 C -0.14 -2.32 4.98 30.59 0.15 -2.16 16 24 C -0.12 -1.49 5.80 30.60 0.18 -1.31 16 25 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 26 C -0.12 -1.35 5.80 30.61 0.18 -1.18 16 27 C -0.12 -1.92 4.35 30.61 0.13 -1.79 16 28 H 0.13 1.61 7.22 -2.39 -0.02 1.60 16 29 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.39 8.07 -2.38 -0.02 2.37 16 31 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 32 H 0.04 2.01 8.07 -2.38 -0.02 1.99 16 33 H 0.01 0.45 7.42 -2.39 -0.02 0.43 16 34 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 35 H 0.12 2.71 7.39 -2.39 -0.02 2.69 16 36 H 0.14 2.52 7.18 -2.38 -0.02 2.50 16 37 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.94 7.80 -2.39 -0.02 0.92 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.85 7.80 -2.39 -0.02 0.83 16 45 H 0.10 1.38 7.99 -2.39 -0.02 1.36 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.22 392.91 7.96 -68.26 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.99 Total: 7.42 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 5.44 Total: 22.50 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -1.37 Total: -88.35 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: 0.16 Total: -50.87 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.71 Total: -4.39 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -76.22 7.96 -68.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811249726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.225 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds