Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00171 * 2 1 4 4 H 1.48499 * 109.47177 * 270.00263 * 3 2 1 5 5 H 1.48505 * 109.46669 * 30.00479 * 3 2 1 6 6 H 1.48504 * 109.46918 * 150.00147 * 3 2 1 7 7 C 1.37883 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47221 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47140 * 54.99512 * 11 10 9 13 13 N 1.46901 * 109.47012 * 294.99661 * 11 10 9 14 14 C 1.50696 * 109.47592 * 174.99966 * 11 10 9 15 15 O 1.21280 * 120.00146 * 99.99362 * 14 11 10 16 16 N 1.34778 * 119.99830 * 280.00281 * 14 11 10 17 17 C 1.46497 * 119.99977 * 179.97438 * 16 14 11 18 18 C 1.53009 * 109.47274 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.46642 * 304.99874 * 18 17 16 20 20 O 1.42900 * 109.46870 * 64.99684 * 18 17 16 21 21 C 1.52999 * 109.46984 * 185.00013 * 18 17 16 22 22 O 1.42905 * 109.46728 * 175.00138 * 21 18 17 23 23 C 1.35896 * 117.00039 * 179.97438 * 22 21 18 24 24 C 1.38773 * 120.03825 * 359.72133 * 23 22 21 25 25 C 1.38136 * 119.98814 * 179.74753 * 24 23 22 26 26 C 1.38249 * 120.08622 * 0.52999 * 25 24 23 27 27 C 1.38483 * 120.07887 * 359.74350 * 26 25 24 28 28 F 1.35105 * 119.99234 * 179.97438 * 27 26 25 29 29 C 1.38386 * 120.00519 * 359.97438 * 27 26 25 30 30 H 0.96996 * 119.99816 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46849 * 59.99884 * 9 7 2 32 32 H 1.09007 * 109.46946 * 300.00132 * 9 7 2 33 33 H 1.09000 * 109.47382 * 60.00291 * 10 9 7 34 34 H 1.08998 * 109.47021 * 299.99966 * 10 9 7 35 35 H 1.00905 * 111.00135 * 176.03985 * 13 11 10 36 36 H 1.00897 * 111.00366 * 300.00111 * 13 11 10 37 37 H 0.97004 * 119.99912 * 359.97438 * 16 14 11 38 38 H 1.09003 * 109.47635 * 59.99850 * 17 16 14 39 39 H 1.08996 * 109.47310 * 299.99537 * 17 16 14 40 40 H 0.96702 * 113.99716 * 60.00481 * 20 18 17 41 41 H 1.09000 * 109.47486 * 55.00077 * 21 18 17 42 42 H 1.09001 * 109.47362 * 294.99354 * 21 18 17 43 43 H 1.07998 * 120.00568 * 0.02562 * 24 23 22 44 44 H 1.08001 * 119.95734 * 180.27487 * 25 24 23 45 45 H 1.07994 * 119.96256 * 179.76844 * 26 25 24 46 46 H 1.08004 * 120.03533 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7282 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9581 -6.4585 -1.3313 17 6 3.9060 -7.5690 -1.4517 18 6 4.3186 -7.7310 -2.9161 19 1 3.4282 -7.8507 -3.5333 20 8 5.0390 -6.5715 -3.3390 21 6 5.2097 -8.9662 -3.0612 22 8 5.4997 -9.1845 -4.4434 23 6 6.2865 -10.2499 -4.7479 24 6 6.7741 -11.0651 -3.7362 25 6 7.5694 -12.1508 -4.0474 26 6 7.8896 -12.4205 -5.3649 27 6 7.4094 -11.6059 -6.3766 28 9 7.7238 -11.8707 -7.6636 29 6 6.6075 -10.5206 -6.0694 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8902 32 1 0.6247 -2.5571 0.8897 33 1 2.8719 -3.6044 0.8895 34 1 2.8719 -3.6043 -0.8905 35 1 0.1637 -5.9553 1.2510 36 1 1.3477 -5.1034 2.0500 37 1 2.6927 -5.9597 -2.1198 38 1 3.4348 -8.4883 -1.1036 39 1 4.7881 -7.3611 -0.8462 40 1 5.8452 -6.4030 -2.8323 41 1 4.6931 -9.8365 -2.6565 42 1 6.1400 -8.8094 -2.5152 43 1 6.5281 -10.8533 -2.7062 44 1 7.9450 -12.7875 -3.2599 45 1 8.5146 -13.2677 -5.6056 46 1 6.2324 -9.8852 -6.8581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818059103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -157.744008 kcal Electronic energy + Delta-G solvation = -28012.901191 eV Core-core repulsion = 23623.805239 eV Total energy + Delta-G solvation = -4389.095952 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -49.39163 -40.76355 -39.92547 -38.45416 -37.21111 -35.27594 -34.47336 -32.80469 -31.85082 -30.89708 -30.17078 -30.04672 -27.31416 -25.77669 -23.78013 -23.42856 -22.66175 -22.09832 -20.68591 -19.82442 -19.14773 -17.75434 -17.33255 -17.19274 -16.86014 -16.52484 -16.38298 -16.24241 -16.12249 -15.70890 -15.58506 -15.28905 -14.73703 -14.49459 -14.34669 -14.29573 -13.99385 -13.83733 -13.44730 -13.21029 -12.90834 -12.62210 -12.48435 -12.32181 -12.02458 -11.83738 -11.55939 -11.54232 -11.35471 -10.89397 -10.74044 -10.65358 -10.56663 -10.19118 -9.81335 -9.43719 -9.39341 -9.22321 -9.00068 -8.86146 -8.38406 -8.22715 -5.93830 -3.95945 0.57485 0.73736 2.27892 2.67834 3.03542 3.17344 3.34942 3.41353 3.44564 3.80432 3.85251 4.07042 4.24606 4.30313 4.33273 4.41171 4.49641 4.50269 4.62785 4.78604 4.81761 4.83707 4.88046 5.03943 5.28194 5.39258 5.41705 5.45738 5.51507 5.53190 5.65274 5.75868 5.80418 6.14082 6.26466 6.42935 6.62854 6.75101 7.07369 7.15273 7.31186 7.51794 7.74963 7.76940 7.95639 8.12454 8.21223 8.48125 9.11900 9.67218 11.17041 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.001652 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.798177 B =16940.473950 C =18047.659464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.099 0.901 13 N -0.807 5.807 14 C 0.485 3.515 15 O -0.556 6.556 16 N -0.724 5.724 17 C 0.091 3.909 18 C 0.100 3.900 19 H 0.119 0.881 20 O -0.543 6.543 21 C 0.029 3.971 22 O -0.297 6.297 23 C 0.162 3.838 24 C -0.222 4.222 25 C -0.049 4.049 26 C -0.194 4.194 27 C 0.139 3.861 28 F -0.134 7.134 29 C -0.190 4.190 30 H 0.259 0.741 31 H 0.013 0.987 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.334 0.666 36 H 0.348 0.652 37 H 0.409 0.591 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.379 0.621 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.692 -27.159 -9.440 31.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.271 3.729 15 O -0.433 6.433 16 N -0.378 5.378 17 C -0.035 4.035 18 C 0.040 3.960 19 H 0.136 0.864 20 O -0.349 6.349 21 C -0.047 4.047 22 O -0.210 6.210 23 C 0.115 3.885 24 C -0.240 4.240 25 C -0.068 4.068 26 C -0.213 4.213 27 C 0.120 3.880 28 F -0.112 7.112 29 C -0.209 4.209 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.227 0.773 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.840 -26.606 -9.514 31.036 hybrid contribution 1.533 -0.066 0.089 1.537 sum 14.373 -26.672 -9.425 31.730 Atomic orbital electron populations 1.69972 1.05944 1.26413 1.50816 1.24992 0.94808 0.99055 0.95471 0.86649 0.79866 0.83772 0.78003 1.20760 1.21269 1.20005 1.21275 0.92898 0.91315 1.50616 0.92984 1.19020 0.93568 0.89830 0.98227 1.21662 0.98874 0.92096 1.00717 1.21851 0.93495 0.93182 0.95138 0.88314 1.58992 1.26892 1.44275 1.03263 1.22842 0.82143 0.85687 0.82266 1.90645 1.61259 1.54292 1.37146 1.46010 1.46249 1.34622 1.10953 1.21806 0.94577 0.91811 0.95261 1.22136 0.95279 0.83750 0.94881 0.86369 1.86702 1.41453 1.44784 1.61932 1.23561 1.00395 0.99667 0.81067 1.86148 1.64150 1.43698 1.26979 1.18634 0.90172 0.86799 0.92864 1.21369 1.04634 0.98736 0.99310 1.20809 0.94699 0.95502 0.95746 1.21082 1.05467 1.02325 0.92433 1.17303 0.96909 0.95097 0.78690 1.91532 1.91085 1.93379 1.35215 1.20288 1.04459 1.00410 0.95771 0.93104 0.96824 0.94674 0.92893 0.92676 0.85460 0.83821 0.75518 0.90539 0.90929 0.77316 0.90365 0.90863 0.84714 0.84552 0.84518 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.78 4.86 -27.89 -0.14 0.64 16 10 C -0.10 -1.88 4.78 -26.74 -0.13 -2.00 16 11 C 0.08 1.27 3.15 -68.87 -0.22 1.06 16 12 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 13 N -0.81 -13.17 8.44 -5.66 -0.05 -13.22 16 14 C 0.48 7.08 7.07 -10.99 -0.08 7.00 16 15 O -0.56 -9.53 16.25 5.56 0.09 -9.44 16 16 N -0.72 -8.02 5.50 -60.29 -0.33 -8.35 16 17 C 0.09 0.76 5.31 -4.04 -0.02 0.74 16 18 C 0.10 0.69 3.28 -26.73 -0.09 0.60 16 19 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 20 O -0.54 -4.71 13.25 -40.08 -0.53 -5.24 16 21 C 0.03 0.17 4.37 37.16 0.16 0.33 16 22 O -0.30 -2.49 10.10 -24.26 -0.25 -2.74 16 23 C 0.16 1.29 6.68 -39.23 -0.26 1.02 16 24 C -0.22 -1.37 9.04 -39.42 -0.36 -1.72 16 25 C -0.05 -0.27 10.04 -39.61 -0.40 -0.66 16 26 C -0.19 -1.23 10.02 -39.49 -0.40 -1.62 16 27 C 0.14 1.12 7.30 -39.44 -0.29 0.83 16 28 F -0.13 -1.18 17.27 2.25 0.04 -1.14 16 29 C -0.19 -1.57 9.97 -39.37 -0.39 -1.97 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.33 4.68 9.06 -39.29 -0.36 4.32 16 36 H 0.35 5.76 8.58 -39.29 -0.34 5.43 16 37 H 0.41 4.16 8.47 -40.82 -0.35 3.81 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.38 2.19 9.05 45.56 0.41 2.60 16 41 H 0.08 0.33 7.67 -51.93 -0.40 -0.07 16 42 H 0.07 0.32 7.65 -51.93 -0.40 -0.08 16 43 H 0.14 0.57 6.30 -52.49 -0.33 0.24 16 44 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 45 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 46 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -34.78 397.15 -8.26 -43.03 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -5.92 Total: 9.73 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.01 Total: -9.22 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.36 Total: -47.65 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.69 Total: -17.42 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.78 -8.26 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818059103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.710 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds