Wall clock time and date at job start Sat Apr 11 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00171 * 2 1 4 4 H 1.48499 * 109.47177 * 270.00263 * 3 2 1 5 5 H 1.48505 * 109.46669 * 30.00479 * 3 2 1 6 6 H 1.48504 * 109.46918 * 150.00147 * 3 2 1 7 7 C 1.37883 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47221 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47140 * 54.99512 * 11 10 9 13 13 N 1.46901 * 109.47012 * 294.99661 * 11 10 9 14 14 C 1.50696 * 109.47592 * 174.99966 * 11 10 9 15 15 O 1.21280 * 120.00146 * 99.99362 * 14 11 10 16 16 N 1.34778 * 119.99830 * 280.00281 * 14 11 10 17 17 C 1.46497 * 119.99977 * 179.97438 * 16 14 11 18 18 C 1.53009 * 109.47274 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.46642 * 304.99874 * 18 17 16 20 20 O 1.42900 * 109.46870 * 64.99684 * 18 17 16 21 21 C 1.52999 * 109.46984 * 185.00013 * 18 17 16 22 22 O 1.42905 * 109.46728 * 175.00138 * 21 18 17 23 23 C 1.35896 * 117.00039 * 179.97438 * 22 21 18 24 24 C 1.38773 * 120.03825 * 359.72133 * 23 22 21 25 25 C 1.38136 * 119.98814 * 179.74753 * 24 23 22 26 26 C 1.38249 * 120.08622 * 0.52999 * 25 24 23 27 27 C 1.38483 * 120.07887 * 359.74350 * 26 25 24 28 28 F 1.35105 * 119.99234 * 179.97438 * 27 26 25 29 29 C 1.38386 * 120.00519 * 359.97438 * 27 26 25 30 30 H 0.96996 * 119.99816 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46849 * 59.99884 * 9 7 2 32 32 H 1.09007 * 109.46946 * 300.00132 * 9 7 2 33 33 H 1.09000 * 109.47382 * 60.00291 * 10 9 7 34 34 H 1.08998 * 109.47021 * 299.99966 * 10 9 7 35 35 H 1.00905 * 111.00135 * 176.03985 * 13 11 10 36 36 H 1.00897 * 111.00366 * 300.00111 * 13 11 10 37 37 H 0.97004 * 119.99912 * 359.97438 * 16 14 11 38 38 H 1.09003 * 109.47635 * 59.99850 * 17 16 14 39 39 H 1.08996 * 109.47310 * 299.99537 * 17 16 14 40 40 H 0.96702 * 113.99716 * 60.00481 * 20 18 17 41 41 H 1.09000 * 109.47486 * 55.00077 * 21 18 17 42 42 H 1.09001 * 109.47362 * 294.99354 * 21 18 17 43 43 H 1.07998 * 120.00568 * 0.02562 * 24 23 22 44 44 H 1.08001 * 119.95734 * 180.27487 * 25 24 23 45 45 H 1.07994 * 119.96256 * 179.76844 * 26 25 24 46 46 H 1.08004 * 120.03533 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7282 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9581 -6.4585 -1.3313 17 6 3.9060 -7.5690 -1.4517 18 6 4.3186 -7.7310 -2.9161 19 1 3.4282 -7.8507 -3.5333 20 8 5.0390 -6.5715 -3.3390 21 6 5.2097 -8.9662 -3.0612 22 8 5.4997 -9.1845 -4.4434 23 6 6.2865 -10.2499 -4.7479 24 6 6.7741 -11.0651 -3.7362 25 6 7.5694 -12.1508 -4.0474 26 6 7.8896 -12.4205 -5.3649 27 6 7.4094 -11.6059 -6.3766 28 9 7.7238 -11.8707 -7.6636 29 6 6.6075 -10.5206 -6.0694 30 1 -0.4850 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8902 32 1 0.6247 -2.5571 0.8897 33 1 2.8719 -3.6044 0.8895 34 1 2.8719 -3.6043 -0.8905 35 1 0.1637 -5.9553 1.2510 36 1 1.3477 -5.1034 2.0500 37 1 2.6927 -5.9597 -2.1198 38 1 3.4348 -8.4883 -1.1036 39 1 4.7881 -7.3611 -0.8462 40 1 5.8452 -6.4030 -2.8323 41 1 4.6931 -9.8365 -2.6565 42 1 6.1400 -8.8094 -2.5152 43 1 6.5281 -10.8533 -2.7062 44 1 7.9450 -12.7875 -3.2599 45 1 8.5146 -13.2677 -5.6056 46 1 6.2324 -9.8852 -6.8581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818059103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:06 Heat of formation + Delta-G solvation = -185.250698 kcal Electronic energy + Delta-G solvation = -28014.093970 eV Core-core repulsion = 23623.805239 eV Total energy + Delta-G solvation = -4390.288731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.00207 -41.33202 -40.97774 -39.07847 -37.80645 -36.78322 -35.41023 -34.79701 -32.39238 -31.91528 -31.46489 -30.65380 -28.49087 -27.08817 -25.10451 -24.05978 -23.39391 -22.66779 -22.27863 -21.08866 -19.69061 -18.73505 -18.31061 -18.05720 -17.73936 -17.49706 -17.19599 -16.95020 -16.83565 -16.75225 -16.61357 -16.36002 -16.12363 -15.48817 -15.27427 -15.08784 -14.89366 -14.75116 -14.44161 -14.26397 -13.84420 -13.73701 -13.58511 -13.38888 -13.19037 -12.93102 -12.78968 -12.51099 -12.34615 -12.24884 -12.00021 -11.88321 -11.75638 -11.64442 -11.29518 -11.21622 -10.97921 -10.47896 -10.18131 -9.95540 -9.60967 -9.36150 -8.12891 -6.22917 0.06807 0.24509 1.42341 1.43527 1.49904 1.54441 1.70713 2.30622 2.45520 2.54753 3.20223 3.27423 3.34509 3.57103 3.61393 3.66188 3.79186 3.87141 3.93548 3.96482 4.07843 4.12194 4.20847 4.25611 4.34330 4.36647 4.40988 4.58459 4.80490 4.88692 4.96184 4.96649 5.05300 5.17781 5.27376 5.30450 5.33962 5.58539 5.66857 5.86140 6.00107 6.11569 6.26525 6.31668 6.42475 6.55175 6.69590 6.95982 7.11970 7.45115 8.98209 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.001652 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.798177 B =16940.473950 C =18047.659464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.001 3.999 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.081 4.081 11 C 0.084 3.916 12 H 0.109 0.891 13 N -0.820 5.820 14 C 0.492 3.508 15 O -0.580 6.580 16 N -0.712 5.712 17 C 0.092 3.908 18 C 0.109 3.891 19 H 0.115 0.885 20 O -0.565 6.565 21 C 0.028 3.972 22 O -0.318 6.318 23 C 0.148 3.852 24 C -0.219 4.219 25 C -0.046 4.046 26 C -0.195 4.195 27 C 0.119 3.881 28 F -0.145 7.145 29 C -0.209 4.209 30 H 0.261 0.739 31 H -0.007 1.007 32 H 0.006 0.994 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.347 0.653 36 H 0.345 0.655 37 H 0.415 0.585 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.390 0.610 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.154 0.846 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 -28.293 -9.038 33.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.119 4.119 11 C -0.032 4.032 12 H 0.127 0.873 13 N -0.349 5.349 14 C 0.277 3.723 15 O -0.461 6.461 16 N -0.365 5.365 17 C -0.032 4.032 18 C 0.049 3.951 19 H 0.133 0.867 20 O -0.372 6.372 21 C -0.047 4.047 22 O -0.231 6.231 23 C 0.102 3.898 24 C -0.237 4.237 25 C -0.064 4.064 26 C -0.214 4.214 27 C 0.100 3.900 28 F -0.123 7.123 29 C -0.229 4.229 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.240 0.760 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.175 0.825 44 H 0.186 0.814 45 H 0.172 0.828 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.495 -27.761 -9.146 32.625 hybrid contribution 1.013 0.253 -0.048 1.046 sum 15.509 -27.507 -9.194 32.889 Atomic orbital electron populations 1.70104 1.07607 1.27456 1.51783 1.25901 0.95704 1.03012 0.95034 0.85543 0.78650 0.78991 0.78408 1.19777 1.20960 1.19059 1.21747 0.93381 0.92764 1.50281 0.92590 1.18842 0.93951 0.91419 0.95755 1.21374 0.97685 0.92102 1.00778 1.21629 0.93825 0.92197 0.95507 0.87344 1.58955 1.27283 1.45376 1.03275 1.22263 0.81903 0.85204 0.82930 1.90639 1.62091 1.55157 1.38169 1.45912 1.45716 1.34895 1.09933 1.21947 0.93981 0.90972 0.96317 1.22020 0.95412 0.83978 0.93651 0.86715 1.86672 1.42285 1.45608 1.62647 1.23639 1.01194 0.99606 0.80283 1.86101 1.64478 1.44102 1.28442 1.18760 0.90721 0.87261 0.93084 1.21673 1.03906 0.98251 0.99913 1.21210 0.93749 0.95368 0.96027 1.21377 1.05139 1.02327 0.92507 1.17545 0.97849 0.95846 0.78748 1.91497 1.91289 1.93506 1.36042 1.20370 1.05338 1.00917 0.96270 0.92980 0.98831 0.97548 0.93835 0.91490 0.83978 0.84097 0.74871 0.89552 0.90597 0.76014 0.88476 0.89091 0.82466 0.81433 0.82804 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.35 16 2 C 0.00 0.07 5.46 84.66 0.46 0.54 16 3 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 1.94 4.86 29.85 0.15 2.08 16 10 C -0.08 -3.18 4.78 30.59 0.15 -3.03 16 11 C 0.08 2.66 3.15 44.17 0.14 2.80 16 12 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 13 N -0.82 -26.68 8.44 -171.81 -1.45 -28.13 16 14 C 0.49 13.65 7.07 87.66 0.62 14.27 16 15 O -0.58 -19.07 16.25 -3.03 -0.05 -19.12 16 16 N -0.71 -14.42 5.50 -463.06 -2.55 -16.97 16 17 C 0.09 1.32 5.31 86.38 0.46 1.78 16 18 C 0.11 1.30 3.28 30.60 0.10 1.40 16 19 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 20 O -0.56 -8.92 13.25 -144.34 -1.91 -10.84 16 21 C 0.03 0.25 4.37 71.98 0.31 0.57 16 22 O -0.32 -4.97 10.10 -87.75 -0.89 -5.85 16 23 C 0.15 2.20 6.68 22.50 0.15 2.35 16 24 C -0.22 -2.13 9.04 22.37 0.20 -1.93 16 25 C -0.05 -0.36 10.04 22.25 0.22 -0.14 16 26 C -0.19 -2.15 10.02 22.33 0.22 -1.92 16 27 C 0.12 1.90 7.30 22.36 0.16 2.06 16 28 F -0.14 -2.63 17.27 44.97 0.78 -1.85 16 29 C -0.21 -3.54 9.97 22.41 0.22 -3.32 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 32 H 0.01 0.35 7.75 -2.38 -0.02 0.33 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.35 9.54 9.06 -89.69 -0.81 8.73 16 36 H 0.35 11.47 8.58 -89.70 -0.77 10.70 16 37 H 0.41 7.69 8.47 -92.71 -0.79 6.91 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.39 3.84 9.05 -74.06 -0.67 3.17 16 41 H 0.10 0.51 7.67 -2.39 -0.02 0.50 16 42 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 43 H 0.16 0.74 6.30 -2.91 -0.02 0.72 16 44 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 45 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -75.54 397.15 -1.94 -77.48 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -1.99 Total: 28.21 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.81 Total: -13.05 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.71 Total: -101.45 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -2.85 Total: -35.81 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -75.54 -1.94 -77.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818059103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.768 kcal (2) G-P(sol) polarization free energy of solvation -75.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds