Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46727 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46971 * 299.99497 * 3 2 1 6 6 H 1.48494 * 109.47420 * 59.99644 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21627 * 120.00164 * 179.97438 * 14 13 12 16 16 C 1.47266 * 119.99711 * 359.97438 * 14 13 12 17 17 C 1.36766 * 126.94398 * 359.68075 * 16 14 13 18 18 N 1.34652 * 108.39937 * 179.87550 * 17 16 14 19 19 H 0.96999 * 124.85267 * 180.14252 * 18 17 16 20 20 C 1.36453 * 110.29683 * 0.40653 * 18 17 16 21 21 C 1.34488 * 108.85297 * 359.74952 * 20 18 17 22 22 C 1.50695 * 126.83044 * 179.97438 * 21 20 18 23 23 C 1.50703 * 109.47401 * 265.02826 * 22 21 20 24 24 C 1.38224 * 119.99989 * 269.72755 * 23 22 21 25 25 C 1.38239 * 120.00228 * 179.78600 * 24 23 22 26 26 C 1.38237 * 119.99595 * 0.44318 * 25 24 23 27 27 C 1.38243 * 120.00040 * 359.81093 * 26 25 24 28 28 C 1.38229 * 119.99780 * 359.97438 * 27 26 25 29 29 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 30 30 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 31 31 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 32 32 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 33 33 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 34 34 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 35 35 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 36 36 H 1.08007 * 125.80034 * 359.97438 * 17 16 14 37 37 H 1.08004 * 125.56975 * 179.77194 * 20 18 17 38 38 H 1.09003 * 109.47042 * 25.03339 * 22 21 20 39 39 H 1.08996 * 109.47191 * 145.02881 * 22 21 20 40 40 H 1.08000 * 120.00400 * 359.97438 * 24 23 22 41 41 H 1.07993 * 120.00592 * 180.27613 * 25 24 23 42 42 H 1.08003 * 119.99977 * 179.83337 * 26 25 24 43 43 H 1.08001 * 119.99853 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.00026 * 180.02562 * 28 27 26 45 45 H 1.09004 * 110.36953 * 265.31028 * 29 13 12 46 46 H 1.09001 * 110.41107 * 142.95306 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5576 -4.0786 2.7173 16 6 -0.7461 -6.2102 2.2305 17 6 0.1292 -7.0874 1.6518 18 7 -0.2560 -8.3396 1.9628 19 1 0.1992 -9.1468 1.6763 20 6 -1.3816 -8.3109 2.7336 21 6 -1.7370 -7.0298 2.9362 22 6 -2.9186 -6.5348 3.7299 23 6 -4.0805 -6.2907 2.8017 24 6 -4.2514 -5.0485 2.2202 25 6 -5.3147 -4.8258 1.3653 26 6 -6.2123 -5.8429 1.0992 27 6 -6.0443 -7.0838 1.6849 28 6 -4.9786 -7.3076 2.5363 29 6 0.4352 -2.6694 1.3064 30 1 -0.4850 0.8402 -0.0004 31 1 -0.2523 -1.8949 -1.2146 32 1 2.5440 -4.0097 -0.9150 33 1 3.0856 -3.4629 0.7058 34 1 0.9490 -5.4571 -0.0263 35 1 1.9700 -5.3820 1.4353 36 1 0.9850 -6.8209 1.0493 37 1 -1.9018 -9.1757 3.1183 38 1 -3.1971 -7.2832 4.4718 39 1 -2.6543 -5.6050 4.2334 40 1 -3.5526 -4.2526 2.4313 41 1 -5.4458 -3.8565 0.9075 42 1 -7.0446 -5.6682 0.4335 43 1 -6.7458 -7.8783 1.4774 44 1 -4.8471 -8.2772 2.9935 45 1 0.9830 -2.2547 2.1526 46 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823527525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = -7.110616 kcal Electronic energy + Delta-G solvation = -29813.837108 eV Core-core repulsion = 25862.042335 eV Total energy + Delta-G solvation = -3951.794773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.13826 -38.89965 -38.85738 -36.90868 -34.29511 -33.50781 -32.16799 -30.78221 -30.57532 -29.91482 -29.32272 -27.58024 -26.00699 -25.14072 -23.37653 -22.28449 -21.31958 -21.09280 -20.01789 -19.40314 -18.57736 -17.36983 -17.13030 -16.45585 -15.94773 -15.23682 -15.02706 -14.94698 -14.82201 -14.51257 -14.06565 -14.05948 -13.67768 -13.23736 -13.18608 -13.06031 -12.89941 -12.80426 -12.65247 -12.58368 -11.91314 -11.85883 -11.57976 -11.34278 -11.18668 -11.03400 -10.87884 -10.72470 -10.60168 -10.56239 -10.45178 -10.16015 -9.39265 -9.16388 -8.67277 -8.63120 -8.55216 -8.38189 -8.31847 -8.16730 -7.65878 -6.26595 -4.36114 1.60902 1.71222 2.04902 2.53323 3.20499 3.26734 3.29709 3.32650 3.83651 4.03800 4.12748 4.28107 4.93350 5.00020 5.05943 5.11672 5.16500 5.24684 5.26994 5.38643 5.41497 5.49191 5.61272 5.63077 5.78694 5.82453 5.92766 5.97721 6.00873 6.08984 6.17288 6.31178 6.32328 6.47251 6.51331 6.69645 6.73151 6.83662 6.87536 6.89538 6.98304 7.07780 7.14206 7.30177 7.35322 7.40338 7.50595 7.76208 8.03321 8.38694 8.67471 9.01114 9.33110 9.43718 10.80553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003457 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.098355 B = 8097.955228 C = 9469.904172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.120 4.120 12 C 0.100 3.900 13 N -0.606 5.606 14 C 0.594 3.406 15 O -0.552 6.552 16 C -0.207 4.207 17 C 0.029 3.971 18 N -0.554 5.554 19 H 0.414 0.586 20 C -0.025 4.025 21 C -0.103 4.103 22 C -0.009 4.009 23 C -0.068 4.068 24 C -0.102 4.102 25 C -0.123 4.123 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.122 4.122 29 C 0.098 3.902 30 H 0.270 0.730 31 H 0.384 0.616 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.182 0.818 37 H 0.164 0.836 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.058 0.942 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -17.487 4.151 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.023 4.023 13 N -0.338 5.338 14 C 0.384 3.616 15 O -0.432 6.432 16 C -0.218 4.218 17 C -0.106 4.106 18 N -0.149 5.149 19 H 0.250 0.750 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.047 4.047 23 C -0.069 4.069 24 C -0.120 4.120 25 C -0.141 4.141 26 C -0.148 4.148 27 C -0.150 4.150 28 C -0.140 4.140 29 C -0.023 4.023 30 H 0.080 0.920 31 H 0.234 0.766 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.199 0.801 37 H 0.182 0.818 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.077 0.923 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.263 -17.695 4.357 18.715 hybrid contribution 0.341 0.942 -0.191 1.020 sum -3.922 -16.752 4.166 17.703 Atomic orbital electron populations 1.69670 1.05974 1.27792 1.49690 1.25069 0.95020 0.99715 0.93371 0.86369 0.80034 0.82844 0.77771 1.19620 1.20776 1.20758 1.21516 0.93665 0.90138 1.52312 0.91540 1.19610 0.86202 0.91540 0.81864 1.86078 1.51480 1.55003 1.46720 1.22651 0.97781 0.95198 1.00115 1.22207 0.89061 0.96345 0.94685 1.48567 1.25953 1.09442 1.49879 1.16998 0.80486 0.85692 0.78402 1.90582 1.38565 1.66564 1.47506 1.20498 1.00151 0.92767 1.08356 1.22766 1.01631 0.83396 1.02838 1.41498 1.23570 1.07903 1.41908 0.74999 1.21469 0.92426 0.98210 1.03163 1.20248 0.97094 0.91205 1.02447 1.18943 0.89075 1.02173 0.94527 1.19785 0.95280 0.93647 0.98152 1.21784 0.97107 0.98069 0.95050 1.21248 0.95196 0.99100 0.98533 1.21089 0.99571 0.93730 1.00452 1.20985 0.98400 0.97034 0.98545 1.20949 0.95344 0.98381 0.99370 1.23221 1.02582 0.76657 0.99860 0.92021 0.76560 0.90789 0.90427 0.92130 0.92652 0.80087 0.81843 0.91166 0.88927 0.83308 0.86354 0.86791 0.86835 0.86836 0.92343 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.72 10.69 55.43 0.59 -23.12 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.85 8.26 -34.44 -0.28 -14.13 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 9 C 0.25 5.93 0.88 -89.62 -0.08 5.85 16 10 O -0.58 -14.85 13.17 -35.23 -0.46 -15.31 16 11 C -0.12 -2.30 6.13 -24.90 -0.15 -2.45 16 12 C 0.10 1.71 5.00 -3.07 -0.02 1.69 16 13 N -0.61 -12.50 3.33 -171.76 -0.57 -13.07 16 14 C 0.59 12.19 7.84 -12.59 -0.10 12.09 16 15 O -0.55 -12.58 12.77 5.25 0.07 -12.51 16 16 C -0.21 -3.46 6.26 -103.35 -0.65 -4.11 16 17 C 0.03 0.37 10.42 -16.85 -0.18 0.19 16 18 N -0.55 -5.46 5.90 -12.84 -0.08 -5.53 16 19 H 0.41 2.44 8.96 -40.82 -0.37 2.07 16 20 C -0.03 -0.28 11.82 -16.82 -0.20 -0.48 16 21 C -0.10 -1.50 5.59 -102.54 -0.57 -2.08 16 22 C -0.01 -0.14 5.33 -29.04 -0.15 -0.29 16 23 C -0.07 -1.04 5.12 -104.63 -0.54 -1.57 16 24 C -0.10 -1.77 9.49 -39.59 -0.38 -2.14 16 25 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 26 C -0.13 -1.76 10.05 -39.58 -0.40 -2.15 16 27 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 28 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 29 C 0.10 2.34 5.51 -2.47 -0.01 2.33 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.38 10.13 7.25 45.56 0.33 10.46 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 34 H 0.06 0.96 6.85 -51.92 -0.36 0.61 16 35 H 0.06 0.78 7.05 -51.93 -0.37 0.41 16 36 H 0.18 2.04 4.42 -52.48 -0.23 1.81 16 37 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.09 1.51 7.05 -51.93 -0.37 1.15 16 40 H 0.15 2.96 5.16 -52.49 -0.27 2.69 16 41 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.06 1.44 8.03 -51.93 -0.42 1.02 16 46 H 0.08 2.28 7.48 -51.93 -0.39 1.89 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -31.20 372.36 -10.18 -41.38 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -5.35 Total: 19.15 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -4.97 Total: -11.82 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.06 Total: -41.72 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.40 Total: -27.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.20 -10.18 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.269 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds