Wall clock time and date at job start Sat Apr 11 2020 06:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00041 * 2 1 4 4 H 1.48507 * 109.46727 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46971 * 299.99497 * 3 2 1 6 6 H 1.48494 * 109.47420 * 59.99644 * 3 2 1 7 7 C 1.37871 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00404 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.88754 * 59.29708 * 9 7 2 11 11 C 1.55163 * 111.00660 * 183.17791 * 9 7 2 12 12 C 1.54320 * 102.94147 * 153.61367 * 11 9 7 13 13 N 1.47021 * 107.27383 * 337.80980 * 12 11 9 14 14 C 1.34779 * 125.65165 * 178.97713 * 13 12 11 15 15 O 1.21627 * 120.00164 * 179.97438 * 14 13 12 16 16 C 1.47266 * 119.99711 * 359.97438 * 14 13 12 17 17 C 1.36766 * 126.94398 * 359.68075 * 16 14 13 18 18 N 1.34652 * 108.39937 * 179.87550 * 17 16 14 19 19 H 0.96999 * 124.85267 * 180.14252 * 18 17 16 20 20 C 1.36453 * 110.29683 * 0.40653 * 18 17 16 21 21 C 1.34488 * 108.85297 * 359.74952 * 20 18 17 22 22 C 1.50695 * 126.83044 * 179.97438 * 21 20 18 23 23 C 1.50703 * 109.47401 * 265.02826 * 22 21 20 24 24 C 1.38224 * 119.99989 * 269.72755 * 23 22 21 25 25 C 1.38239 * 120.00228 * 179.78600 * 24 23 22 26 26 C 1.38237 * 119.99595 * 0.44318 * 25 24 23 27 27 C 1.38243 * 120.00040 * 359.81093 * 26 25 24 28 28 C 1.38229 * 119.99780 * 359.97438 * 27 26 25 29 29 C 1.47524 * 108.71517 * 358.94187 * 13 12 11 30 30 H 0.97010 * 119.99713 * 0.02562 * 1 2 3 31 31 H 0.96696 * 114.00036 * 300.70269 * 10 9 7 32 32 H 1.09002 * 110.71715 * 271.97869 * 11 9 7 33 33 H 1.08996 * 110.71824 * 35.25310 * 11 9 7 34 34 H 1.09008 * 109.88384 * 97.22443 * 12 11 9 35 35 H 1.09003 * 109.88291 * 218.23509 * 12 11 9 36 36 H 1.08007 * 125.80034 * 359.97438 * 17 16 14 37 37 H 1.08004 * 125.56975 * 179.77194 * 20 18 17 38 38 H 1.09003 * 109.47042 * 25.03339 * 22 21 20 39 39 H 1.08996 * 109.47191 * 145.02881 * 22 21 20 40 40 H 1.08000 * 120.00400 * 359.97438 * 24 23 22 41 41 H 1.07993 * 120.00592 * 180.27613 * 25 24 23 42 42 H 1.08003 * 119.99977 * 179.83337 * 26 25 24 43 43 H 1.08001 * 119.99853 * 179.97438 * 27 26 25 44 44 H 1.08003 * 120.00026 * 180.02562 * 28 27 26 45 45 H 1.09004 * 110.36953 * 265.31028 * 29 13 12 46 46 H 1.09001 * 110.41107 * 142.95306 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4062 -2.5998 -1.1478 11 6 2.2253 -3.7040 0.0815 12 6 1.3634 -4.8018 0.7399 13 7 0.2753 -4.1275 1.4630 14 6 -0.7057 -4.7400 2.1551 15 8 -1.5576 -4.0786 2.7173 16 6 -0.7461 -6.2102 2.2305 17 6 0.1292 -7.0874 1.6518 18 7 -0.2560 -8.3396 1.9628 19 1 0.1992 -9.1468 1.6763 20 6 -1.3816 -8.3109 2.7336 21 6 -1.7370 -7.0298 2.9362 22 6 -2.9186 -6.5348 3.7299 23 6 -4.0805 -6.2907 2.8017 24 6 -4.2514 -5.0485 2.2202 25 6 -5.3147 -4.8258 1.3653 26 6 -6.2123 -5.8429 1.0992 27 6 -6.0443 -7.0838 1.6849 28 6 -4.9786 -7.3076 2.5363 29 6 0.4352 -2.6694 1.3064 30 1 -0.4850 0.8402 -0.0004 31 1 -0.2523 -1.8949 -1.2146 32 1 2.5440 -4.0097 -0.9150 33 1 3.0856 -3.4629 0.7058 34 1 0.9490 -5.4571 -0.0263 35 1 1.9700 -5.3820 1.4353 36 1 0.9850 -6.8209 1.0493 37 1 -1.9018 -9.1757 3.1183 38 1 -3.1971 -7.2832 4.4718 39 1 -2.6543 -5.6050 4.2334 40 1 -3.5526 -4.2526 2.4313 41 1 -5.4458 -3.8565 0.9075 42 1 -7.0446 -5.6682 0.4335 43 1 -6.7458 -7.8783 1.4774 44 1 -4.8471 -8.2772 2.9935 45 1 0.9830 -2.2547 2.1526 46 1 -0.5382 -2.1882 1.2111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823527525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:16 Heat of formation + Delta-G solvation = -27.736104 kcal Electronic energy + Delta-G solvation = -29814.731496 eV Core-core repulsion = 25862.042335 eV Total energy + Delta-G solvation = -3952.689161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.17111 -40.47562 -39.93678 -38.61078 -36.06642 -34.57836 -34.19548 -32.20809 -31.67226 -31.20566 -30.56124 -29.23689 -27.03978 -26.96885 -24.89842 -23.38816 -22.43434 -22.37503 -21.57566 -20.81087 -19.69014 -19.09916 -18.51059 -17.55233 -17.36542 -17.13282 -16.56191 -16.29046 -16.05957 -15.91816 -15.61202 -15.20849 -14.83857 -14.79611 -14.55002 -14.47517 -14.12907 -14.08902 -13.83079 -13.75431 -13.49408 -13.46480 -13.14533 -12.93769 -12.86437 -12.44076 -12.30367 -12.22016 -12.14939 -12.07260 -11.93557 -11.72422 -11.21078 -10.77392 -10.64903 -10.27314 -9.74004 -9.66214 -9.51730 -9.26482 -9.12384 -8.25268 -6.42683 0.52358 0.59310 0.87447 1.39867 1.42775 1.53880 1.56220 2.19357 2.37945 2.55817 2.65234 2.99773 3.01139 3.78646 3.92243 3.93768 4.08911 4.12030 4.18293 4.23567 4.27888 4.31427 4.34843 4.41472 4.51198 4.58635 4.70419 4.73191 4.76532 4.86801 4.96211 5.02764 5.06302 5.09992 5.18002 5.24789 5.34137 5.36977 5.44122 5.53346 5.63412 5.74096 5.76298 5.81463 5.92010 6.03796 6.06814 6.25060 6.64774 6.77397 6.86236 7.28569 7.35406 7.47140 8.80210 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.003457 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.098355 B = 8097.955228 C = 9469.904172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.284 1.284 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.232 3.768 10 O -0.589 6.589 11 C -0.113 4.113 12 C 0.103 3.897 13 N -0.615 5.615 14 C 0.580 3.420 15 O -0.592 6.592 16 C -0.256 4.256 17 C 0.048 3.952 18 N -0.530 5.530 19 H 0.439 0.561 20 C 0.006 3.994 21 C -0.138 4.138 22 C -0.005 4.005 23 C -0.076 4.076 24 C -0.139 4.139 25 C -0.146 4.146 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.116 4.116 29 C 0.114 3.886 30 H 0.268 0.732 31 H 0.373 0.627 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.201 0.799 37 H 0.210 0.790 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.038 0.962 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 -22.390 3.920 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.397 6.397 11 C -0.151 4.151 12 C -0.019 4.019 13 N -0.347 5.347 14 C 0.373 3.627 15 O -0.475 6.475 16 C -0.266 4.266 17 C -0.089 4.089 18 N -0.126 5.126 19 H 0.280 0.720 20 C -0.123 4.123 21 C -0.144 4.144 22 C -0.043 4.043 23 C -0.077 4.077 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.009 4.009 30 H 0.078 0.922 31 H 0.223 0.777 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.217 0.783 37 H 0.227 0.773 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.056 0.944 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.473 -22.665 4.113 23.295 hybrid contribution 0.061 2.416 -0.099 2.419 sum -3.412 -20.249 4.014 20.923 Atomic orbital electron populations 1.69808 1.07312 1.28279 1.50388 1.25856 0.95702 1.02957 0.93115 0.85404 0.79258 0.78912 0.77439 1.18508 1.20562 1.20998 1.21873 0.94027 0.91286 1.52140 0.91128 1.19872 0.86715 0.93340 0.80955 1.86063 1.51464 1.54550 1.47614 1.22660 0.97310 0.93614 1.01515 1.22413 0.88117 0.95775 0.95607 1.48625 1.27365 1.07986 1.50743 1.17829 0.79581 0.87780 0.77520 1.90577 1.39909 1.67969 1.49094 1.20354 1.03502 0.90590 1.12141 1.22826 1.00846 0.83890 1.01372 1.41506 1.22895 1.07852 1.40315 0.72014 1.21998 0.91558 0.97884 1.00820 1.20400 0.97484 0.92556 1.03999 1.18873 0.89191 1.01303 0.94919 1.19959 0.96281 0.93261 0.98151 1.21608 0.97724 0.98689 0.97691 1.21319 0.96005 0.99940 0.99128 1.21386 0.99428 0.93619 1.00707 1.21469 0.98513 0.97224 0.97048 1.21332 0.94220 0.99040 0.98804 1.22709 0.99662 0.79102 0.99457 0.92233 0.77736 0.89412 0.89177 0.90466 0.88575 0.78290 0.77311 0.87711 0.92994 0.87630 0.87311 0.84356 0.82976 0.82936 0.94382 0.94429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.82 10.69 21.45 0.23 -51.59 16 2 C 0.02 1.29 5.29 84.65 0.45 1.74 16 3 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.56 -29.37 8.26 25.60 0.21 -29.15 16 8 H 0.07 3.58 7.78 -2.91 -0.02 3.56 16 9 C 0.23 11.45 0.88 -10.15 -0.01 11.44 16 10 O -0.59 -31.31 13.17 -148.98 -1.96 -33.28 16 11 C -0.11 -4.26 6.13 31.78 0.19 -4.06 16 12 C 0.10 3.36 5.00 86.73 0.43 3.79 16 13 N -0.62 -26.51 3.33 -815.57 -2.71 -29.23 16 14 C 0.58 25.38 7.84 86.62 0.68 26.06 16 15 O -0.59 -30.23 12.77 -4.12 -0.05 -30.28 16 16 C -0.26 -8.46 6.26 -19.04 -0.12 -8.58 16 17 C 0.05 1.09 10.42 83.92 0.87 1.96 16 18 N -0.53 -7.74 5.90 -194.55 -1.15 -8.89 16 19 H 0.44 2.43 8.96 -92.71 -0.83 1.60 16 20 C 0.01 0.10 11.82 83.12 0.98 1.08 16 21 C -0.14 -3.82 5.59 -18.52 -0.10 -3.92 16 22 C -0.01 -0.15 5.33 29.10 0.16 0.01 16 23 C -0.08 -2.34 5.12 -19.87 -0.10 -2.44 16 24 C -0.14 -5.28 9.49 22.27 0.21 -5.06 16 25 C -0.15 -4.91 10.05 22.27 0.22 -4.69 16 26 C -0.13 -3.49 10.05 22.27 0.22 -3.26 16 27 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 28 C -0.12 -2.67 9.70 22.27 0.22 -2.45 16 29 C 0.11 5.86 5.51 86.84 0.48 6.34 16 30 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 31 H 0.37 21.14 7.25 -74.06 -0.54 20.60 16 32 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 34 H 0.08 2.27 6.85 -2.38 -0.02 2.26 16 35 H 0.10 2.38 7.05 -2.39 -0.02 2.36 16 36 H 0.20 3.66 4.42 -2.91 -0.01 3.65 16 37 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.10 2.12 8.09 -2.39 -0.02 2.10 16 39 H 0.05 1.87 7.05 -2.39 -0.02 1.86 16 40 H 0.11 4.90 5.16 -2.91 -0.02 4.88 16 41 H 0.11 3.64 8.06 -2.91 -0.02 3.61 16 42 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.04 2.04 8.03 -2.38 -0.02 2.02 16 46 H 0.04 2.24 7.48 -2.39 -0.02 2.22 16 Total: -1.00 -77.72 372.36 1.27 -76.45 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.33 Total: 45.87 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 5.22 Total: -13.72 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -3.63 Total: -89.71 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -2.01 Total: -63.56 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -77.72 1.27 -76.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823527525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.714 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds