Wall clock time and date at job start Sat Apr 11 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86804 * 120.00186 * 2 1 4 4 H 1.48505 * 109.46887 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.47049 * 29.99699 * 3 2 1 6 6 H 1.48506 * 109.46888 * 150.00281 * 3 2 1 7 7 C 1.39891 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00585 * 197.93789 * 7 2 1 9 9 C 1.41221 * 119.99752 * 17.93063 * 7 2 1 10 10 C 1.40830 * 120.17733 * 24.55014 * 9 7 2 11 11 C 1.36438 * 119.81302 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18323 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81881 * 179.97438 * 12 11 10 14 14 C 1.42903 * 117.00186 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47371 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.46970 * 305.00116 * 15 14 13 17 17 O 1.42901 * 109.47495 * 64.99639 * 15 14 13 18 18 C 1.52997 * 109.47246 * 184.99984 * 15 14 13 19 19 N 1.46902 * 109.47254 * 179.97438 * 18 15 14 20 20 C 1.48118 * 111.00084 * 184.96033 * 19 18 15 21 21 C 1.50867 * 105.66516 * 213.22465 * 20 19 18 22 22 C 1.38306 * 132.93009 * 197.32891 * 21 20 19 23 23 C 1.38329 * 118.93192 * 179.97438 * 22 21 20 24 24 N 1.31885 * 120.77299 * 0.02562 * 23 22 21 25 25 C 1.31953 * 121.85597 * 359.97438 * 24 23 22 26 26 C 1.38012 * 120.57322 * 0.02716 * 25 24 23 27 27 C 1.48111 * 110.99469 * 69.87532 * 19 18 15 28 28 C 1.39319 * 120.36596 * 0.25687 * 12 11 10 29 29 C 1.36439 * 120.18055 * 359.47950 * 28 12 11 30 30 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.09835 * 0.02562 * 10 9 7 32 32 H 1.07996 * 119.91312 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46912 * 59.99754 * 14 13 12 34 34 H 1.09003 * 109.47029 * 300.00456 * 14 13 12 35 35 H 0.96704 * 113.99716 * 60.00302 * 17 15 14 36 36 H 1.08999 * 109.47244 * 299.99965 * 18 15 14 37 37 H 1.09005 * 109.47214 * 60.00038 * 18 15 14 38 38 H 1.09001 * 110.21405 * 332.27108 * 20 19 18 39 39 H 1.08998 * 110.20869 * 94.17714 * 20 19 18 40 40 H 1.08005 * 120.53045 * 359.97438 * 22 21 20 41 41 H 1.08004 * 119.60826 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.71571 * 180.02562 * 25 24 23 43 43 H 1.09003 * 110.19914 * 265.86304 * 27 19 18 44 44 H 1.09001 * 110.20233 * 27.66716 * 27 19 18 45 45 H 1.07995 * 119.90763 * 179.72485 * 28 12 11 46 46 H 1.08001 * 120.09240 * 180.25873 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3536 -2.4046 -0.3776 10 6 0.2245 -2.3574 -1.2180 11 6 -0.4026 -3.5146 -1.5773 12 6 0.0707 -4.7405 -1.1146 13 8 -0.5589 -5.8867 -1.4761 14 6 -0.0231 -7.1096 -0.9667 15 6 -0.8583 -8.2848 -1.4787 16 1 -1.9050 -8.1272 -1.2185 17 8 -0.7293 -8.3780 -2.8988 18 6 -0.3626 -9.5814 -0.8353 19 7 -1.1649 -10.7097 -1.3264 20 6 -0.7922 -11.9662 -0.6363 21 6 -0.9712 -13.0610 -1.6588 22 6 -1.0841 -14.4357 -1.5571 23 6 -1.2435 -15.1813 -2.7112 24 7 -1.2871 -14.5958 -3.8922 25 6 -1.1824 -13.2871 -4.0250 26 6 -1.0214 -12.4798 -2.9173 27 6 -0.8752 -10.9859 -2.7524 28 6 1.1835 -4.7955 -0.2781 29 6 1.8252 -3.6479 0.0861 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1439 -1.4079 -1.5772 32 1 -1.2688 -3.4803 -2.2214 33 1 -0.0495 -7.0919 0.1229 34 1 1.0075 -7.2228 -1.3033 35 1 0.1778 -8.5188 -3.2029 36 1 0.6841 -9.7390 -1.0954 37 1 -0.4610 -9.5103 0.2480 38 1 0.2467 -11.9225 -0.3095 39 1 -1.4492 -12.1365 0.2166 40 1 -1.0485 -14.9192 -0.5919 41 1 -1.3324 -16.2556 -2.6445 42 1 -1.2231 -12.8439 -5.0091 43 1 -1.5903 -10.4654 -3.3894 44 1 0.1409 -10.6764 -2.9969 45 1 1.5414 -5.7495 0.0797 46 1 2.6902 -3.6926 0.7312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857874709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:46 Heat of formation + Delta-G solvation = -13.057688 kcal Electronic energy + Delta-G solvation = -27614.842126 eV Core-core repulsion = 23662.789468 eV Total energy + Delta-G solvation = -3952.052657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30152 -39.28101 -38.45020 -36.97048 -35.97803 -33.34551 -32.89583 -32.18401 -30.48788 -29.56898 -28.99120 -28.33245 -26.54109 -24.77053 -23.63238 -22.45367 -22.06451 -21.69432 -20.72523 -20.59372 -17.46618 -17.36562 -17.01554 -16.76498 -16.68087 -16.26463 -15.93152 -15.53614 -15.19315 -14.84566 -14.62106 -14.19574 -13.98897 -13.95569 -13.83212 -13.49025 -13.32834 -12.97831 -12.76049 -12.57953 -12.29938 -12.17462 -12.01600 -11.80989 -11.70012 -11.45037 -11.17361 -10.99002 -10.83631 -10.65777 -10.11206 -10.05303 -9.95377 -9.93248 -9.84753 -9.48565 -9.36064 -9.04792 -8.77813 -7.67173 -7.06123 -6.74434 -4.28003 0.71072 0.81782 2.75608 2.92298 3.07357 3.10479 3.19509 3.23673 3.37738 3.79473 3.92430 3.93533 4.03261 4.20723 4.29334 4.57560 4.59521 4.69250 4.74828 4.83279 4.91634 4.98769 5.07516 5.09073 5.19157 5.25201 5.27734 5.39158 5.53487 5.55835 5.62493 5.64458 5.87411 5.97114 6.02235 6.20045 6.25809 6.29211 6.45801 6.70117 6.95048 7.08525 7.16085 7.42915 7.51953 7.54479 7.57895 7.75977 7.98217 8.17969 8.42234 8.62755 8.87625 8.96066 10.20004 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.001606 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.704409 B =17434.359697 C =17670.535488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.133 4.133 11 C -0.118 4.118 12 C -0.010 4.010 13 O -0.316 6.316 14 C 0.040 3.960 15 C 0.117 3.883 16 H 0.116 0.884 17 O -0.546 6.546 18 C 0.016 3.984 19 N -0.494 5.494 20 C 0.071 3.929 21 C -0.062 4.062 22 C -0.153 4.153 23 C 0.097 3.903 24 N -0.482 5.482 25 C 0.118 3.882 26 C -0.153 4.153 27 C 0.087 3.913 28 C -0.168 4.168 29 C -0.199 4.199 30 H 0.280 0.720 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.368 0.632 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.799 -23.633 -2.107 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.085 3.915 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.053 4.053 13 O -0.232 6.232 14 C -0.038 4.038 15 C 0.057 3.943 16 H 0.134 0.866 17 O -0.351 6.351 18 C -0.113 4.113 19 N -0.217 5.217 20 C -0.056 4.056 21 C -0.071 4.071 22 C -0.173 4.173 23 C -0.061 4.061 24 N -0.190 5.190 25 C -0.039 4.039 26 C -0.156 4.156 27 C -0.041 4.041 28 C -0.187 4.187 29 C -0.219 4.219 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.214 0.786 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.176 0.824 42 H 0.175 0.825 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.477 -23.730 -2.821 24.025 hybrid contribution 2.179 0.909 1.104 2.606 sum -0.298 -22.821 -1.717 22.887 Atomic orbital electron populations 1.69835 1.07508 1.29172 1.35881 1.25879 0.94722 1.01232 0.92365 0.86323 0.80438 0.80706 0.79291 1.19303 1.20366 1.18723 1.19471 0.98111 0.91260 1.40551 0.90543 1.17605 0.91864 0.92122 0.89863 1.20985 0.98468 0.96330 0.99471 1.19845 1.00811 0.90210 1.02845 1.18612 0.97060 0.84808 1.04823 1.85889 1.54498 1.11958 1.70816 1.23062 0.96870 0.85236 0.98614 1.21881 1.01817 0.89786 0.80821 0.86616 1.86692 1.32438 1.95226 1.20718 1.22999 0.95152 0.91602 1.01559 1.65241 1.51382 1.02345 1.02779 1.21679 1.00739 0.86914 0.96287 1.20867 0.95985 0.94280 0.95959 1.21509 1.02434 0.92714 1.00677 1.22767 0.95496 1.00467 0.87323 1.67780 1.12565 1.11454 1.27235 1.22141 0.95037 0.88427 0.98251 1.21771 1.01264 0.97709 0.94846 1.21709 1.01638 0.89716 0.91050 1.20384 0.98061 0.97697 1.02561 1.20548 1.03139 0.92543 1.05625 0.90882 0.85654 0.88401 0.92306 0.93092 0.78565 0.93530 0.88769 0.91424 0.88366 0.84667 0.82355 0.82514 0.87155 0.91864 0.89013 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.56 10.96 55.54 0.61 -19.96 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.56 29.60 -169.99 -5.03 13.53 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.23 9.04 -37.83 -0.34 -12.57 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 11 C -0.12 -2.86 9.92 -39.83 -0.40 -3.25 16 12 C -0.01 -0.22 6.71 -38.78 -0.26 -0.49 16 13 O -0.32 -6.28 10.09 -23.58 -0.24 -6.51 16 14 C 0.04 0.56 4.37 37.16 0.16 0.73 16 15 C 0.12 1.33 3.50 -26.74 -0.09 1.24 16 16 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 17 O -0.55 -6.42 10.61 -40.08 -0.43 -6.84 16 18 C 0.02 0.13 4.48 -3.82 -0.02 0.12 16 19 N -0.49 -4.51 5.47 -235.10 -1.29 -5.80 16 20 C 0.07 0.54 6.60 -4.22 -0.03 0.51 16 21 C -0.06 -0.53 6.33 -104.34 -0.66 -1.19 16 22 C -0.15 -1.11 10.12 -39.52 -0.40 -1.51 16 23 C 0.10 0.76 11.19 -17.49 -0.20 0.56 16 24 N -0.48 -4.79 10.36 -13.25 -0.14 -4.93 16 25 C 0.12 1.08 11.19 -17.58 -0.20 0.88 16 26 C -0.15 -1.40 6.31 -104.38 -0.66 -2.06 16 27 C 0.09 0.76 4.94 -4.16 -0.02 0.74 16 28 C -0.17 -3.71 8.96 -39.83 -0.36 -4.07 16 29 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 30 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 31 H 0.13 3.34 6.16 -52.49 -0.32 3.01 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.06 0.81 7.64 -51.93 -0.40 0.41 16 34 H 0.05 0.68 7.66 -51.93 -0.40 0.28 16 35 H 0.37 3.15 8.45 45.56 0.39 3.54 16 36 H 0.05 0.35 7.83 -51.93 -0.41 -0.06 16 37 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.07 0.45 7.81 -51.93 -0.41 0.04 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 41 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.11 1.08 7.34 -51.93 -0.38 0.70 16 44 H 0.06 0.49 6.89 -51.93 -0.36 0.13 16 45 H 0.09 1.72 6.27 -52.49 -0.33 1.39 16 46 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -30.98 378.11 -11.22 -42.20 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.54 Total: 8.44 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -4.87 Total: -25.84 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: -0.81 Total: -30.68 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.66 Total: -13.36 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.98 -11.22 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857874709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.143 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds