Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86804 * 120.00186 * 2 1 4 4 H 1.48505 * 109.46887 * 269.99875 * 3 2 1 5 5 H 1.48497 * 109.47049 * 29.99699 * 3 2 1 6 6 H 1.48506 * 109.46888 * 150.00281 * 3 2 1 7 7 C 1.39891 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00585 * 197.93789 * 7 2 1 9 9 C 1.41221 * 119.99752 * 17.93063 * 7 2 1 10 10 C 1.40830 * 120.17733 * 24.55014 * 9 7 2 11 11 C 1.36438 * 119.81302 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18323 * 0.02562 * 11 10 9 13 13 O 1.35677 * 119.81881 * 179.97438 * 12 11 10 14 14 C 1.42903 * 117.00186 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.47371 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.46970 * 305.00116 * 15 14 13 17 17 O 1.42901 * 109.47495 * 64.99639 * 15 14 13 18 18 C 1.52997 * 109.47246 * 184.99984 * 15 14 13 19 19 N 1.46902 * 109.47254 * 179.97438 * 18 15 14 20 20 C 1.48118 * 111.00084 * 184.96033 * 19 18 15 21 21 C 1.50867 * 105.66516 * 213.22465 * 20 19 18 22 22 C 1.38306 * 132.93009 * 197.32891 * 21 20 19 23 23 C 1.38329 * 118.93192 * 179.97438 * 22 21 20 24 24 N 1.31885 * 120.77299 * 0.02562 * 23 22 21 25 25 C 1.31953 * 121.85597 * 359.97438 * 24 23 22 26 26 C 1.38012 * 120.57322 * 0.02716 * 25 24 23 27 27 C 1.48111 * 110.99469 * 69.87532 * 19 18 15 28 28 C 1.39319 * 120.36596 * 0.25687 * 12 11 10 29 29 C 1.36439 * 120.18055 * 359.47950 * 28 12 11 30 30 H 0.97006 * 119.99573 * 0.02562 * 1 2 3 31 31 H 1.07999 * 120.09835 * 0.02562 * 10 9 7 32 32 H 1.07996 * 119.91312 * 179.97438 * 11 10 9 33 33 H 1.09003 * 109.46912 * 59.99754 * 14 13 12 34 34 H 1.09003 * 109.47029 * 300.00456 * 14 13 12 35 35 H 0.96704 * 113.99716 * 60.00302 * 17 15 14 36 36 H 1.08999 * 109.47244 * 299.99965 * 18 15 14 37 37 H 1.09005 * 109.47214 * 60.00038 * 18 15 14 38 38 H 1.09001 * 110.21405 * 332.27108 * 20 19 18 39 39 H 1.08998 * 110.20869 * 94.17714 * 20 19 18 40 40 H 1.08005 * 120.53045 * 359.97438 * 22 21 20 41 41 H 1.08004 * 119.60826 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.71571 * 180.02562 * 25 24 23 43 43 H 1.09003 * 110.19914 * 265.86304 * 27 19 18 44 44 H 1.09001 * 110.20233 * 27.66716 * 27 19 18 45 45 H 1.07995 * 119.90763 * 179.72485 * 28 12 11 46 46 H 1.08001 * 120.09240 * 180.25873 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5405 1.4401 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3536 -2.4046 -0.3776 10 6 0.2245 -2.3574 -1.2180 11 6 -0.4026 -3.5146 -1.5773 12 6 0.0707 -4.7405 -1.1146 13 8 -0.5589 -5.8867 -1.4761 14 6 -0.0231 -7.1096 -0.9667 15 6 -0.8583 -8.2848 -1.4787 16 1 -1.9050 -8.1272 -1.2185 17 8 -0.7293 -8.3780 -2.8988 18 6 -0.3626 -9.5814 -0.8353 19 7 -1.1649 -10.7097 -1.3264 20 6 -0.7922 -11.9662 -0.6363 21 6 -0.9712 -13.0610 -1.6588 22 6 -1.0841 -14.4357 -1.5571 23 6 -1.2435 -15.1813 -2.7112 24 7 -1.2871 -14.5958 -3.8922 25 6 -1.1824 -13.2871 -4.0250 26 6 -1.0214 -12.4798 -2.9173 27 6 -0.8752 -10.9859 -2.7524 28 6 1.1835 -4.7955 -0.2781 29 6 1.8252 -3.6479 0.0861 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1439 -1.4079 -1.5772 32 1 -1.2688 -3.4803 -2.2214 33 1 -0.0495 -7.0919 0.1229 34 1 1.0075 -7.2228 -1.3033 35 1 0.1778 -8.5188 -3.2029 36 1 0.6841 -9.7390 -1.0954 37 1 -0.4610 -9.5103 0.2480 38 1 0.2467 -11.9225 -0.3095 39 1 -1.4492 -12.1365 0.2166 40 1 -1.0485 -14.9192 -0.5919 41 1 -1.3324 -16.2556 -2.6445 42 1 -1.2231 -12.8439 -5.0091 43 1 -1.5903 -10.4654 -3.3894 44 1 0.1409 -10.6764 -2.9969 45 1 1.5414 -5.7495 0.0797 46 1 2.6902 -3.6926 0.7312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857874709.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -33.677816 kcal Electronic energy + Delta-G solvation = -27615.736282 eV Core-core repulsion = 23662.789468 eV Total energy + Delta-G solvation = -3952.946813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91535 -40.64917 -39.49592 -38.25822 -37.22709 -35.17766 -33.59689 -32.80462 -31.89121 -31.11284 -30.64370 -28.94092 -27.54916 -26.46555 -24.55688 -23.19447 -22.97373 -22.55767 -22.26392 -22.15702 -19.25295 -18.73422 -17.90964 -17.69928 -17.32646 -17.24603 -17.02620 -16.67924 -16.28888 -15.83576 -15.73255 -15.60054 -15.27873 -14.86627 -14.77443 -14.49437 -14.21111 -14.05932 -14.04406 -13.90072 -13.54324 -13.47742 -13.21224 -13.02312 -12.81588 -12.67050 -12.59186 -12.37802 -12.28513 -11.95556 -11.68013 -11.58255 -11.20224 -10.91371 -10.86690 -10.71198 -10.55316 -10.07663 -9.55716 -9.39900 -8.92111 -8.59248 -6.22568 0.11479 0.21325 0.95306 1.03128 1.40018 1.52981 1.53063 2.22780 2.31676 2.72865 2.77135 2.96309 3.26245 3.34436 3.47040 3.64731 3.70500 3.92358 3.98526 3.99543 4.03155 4.17459 4.28074 4.29877 4.36827 4.40812 4.44262 4.47660 4.49577 4.62571 4.66777 4.83087 4.86567 4.92694 4.97732 5.05621 5.09536 5.22348 5.26572 5.28772 5.59192 5.64390 5.65399 5.71605 5.83304 5.88680 6.06240 6.26846 6.57035 6.77284 6.83126 6.95463 6.97526 7.11037 8.37201 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.045539 B = 0.001606 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.704409 B =17434.359697 C =17670.535488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.500 4.500 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.153 4.153 11 C -0.135 4.135 12 C 0.002 3.998 13 O -0.331 6.331 14 C 0.030 3.970 15 C 0.127 3.873 16 H 0.097 0.903 17 O -0.561 6.561 18 C 0.026 3.974 19 N -0.511 5.511 20 C 0.074 3.926 21 C -0.074 4.074 22 C -0.151 4.151 23 C 0.089 3.911 24 N -0.510 5.510 25 C 0.103 3.897 26 C -0.168 4.168 27 C 0.092 3.908 28 C -0.164 4.164 29 C -0.207 4.207 30 H 0.287 0.713 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.382 0.618 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 -25.402 -1.052 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.051 3.949 10 C -0.172 4.172 11 C -0.154 4.154 12 C -0.042 4.042 13 O -0.247 6.247 14 C -0.046 4.046 15 C 0.067 3.933 16 H 0.115 0.885 17 O -0.368 6.368 18 C -0.103 4.103 19 N -0.235 5.235 20 C -0.052 4.052 21 C -0.082 4.082 22 C -0.170 4.170 23 C -0.068 4.068 24 N -0.218 5.218 25 C -0.053 4.053 26 C -0.170 4.170 27 C -0.036 4.036 28 C -0.183 4.183 29 C -0.226 4.226 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.231 0.769 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.126 0.874 40 H 0.181 0.819 41 H 0.202 0.798 42 H 0.183 0.817 43 H 0.112 0.888 44 H 0.091 0.909 45 H 0.149 0.851 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.391 -25.531 -1.770 25.630 hybrid contribution 1.766 1.215 0.748 2.271 sum 0.375 -24.317 -1.022 24.341 Atomic orbital electron populations 1.69895 1.08983 1.30432 1.36564 1.26733 0.95465 1.04485 0.91375 0.85208 0.79070 0.76028 0.79411 1.18849 1.19436 1.18130 1.19720 0.98378 0.92429 1.42417 0.90543 1.17967 0.92671 0.93450 0.90832 1.20892 0.99357 0.96370 1.00601 1.20010 1.01224 0.90792 1.03407 1.18674 0.96593 0.85473 1.03438 1.85883 1.54884 1.12768 1.71130 1.23476 0.98186 0.83490 0.99436 1.21739 1.00431 0.90237 0.80909 0.88497 1.86672 1.33894 1.95263 1.20985 1.22877 0.95775 0.89723 1.01899 1.65179 1.52093 1.03193 1.03003 1.21713 1.01833 0.85699 0.95995 1.21155 0.95992 0.95128 0.95942 1.21820 1.01163 0.92314 1.01747 1.23281 0.94700 1.01843 0.87004 1.67791 1.13614 1.11858 1.28585 1.22349 0.95431 0.88554 0.98970 1.21850 1.01966 0.97921 0.95308 1.21603 1.01679 0.89442 0.90855 1.20707 0.97245 0.98737 1.01611 1.20807 1.03636 0.92555 1.05633 0.90247 0.87387 0.87686 0.91146 0.91439 0.76947 0.91751 0.87426 0.89902 0.87446 0.81855 0.79847 0.81665 0.88816 0.90859 0.85061 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.07 10.96 21.82 0.24 -43.84 16 2 C 0.03 1.69 5.13 85.24 0.44 2.12 16 3 Si 0.98 38.36 29.60 68.60 2.03 40.39 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 7 C -0.50 -26.96 9.04 23.40 0.21 -26.75 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.05 2.87 5.57 -21.28 -0.12 2.75 16 10 C -0.15 -8.22 8.64 22.48 0.19 -8.02 16 11 C -0.14 -6.66 9.92 22.11 0.22 -6.44 16 12 C 0.00 0.09 6.71 22.79 0.15 0.25 16 13 O -0.33 -12.65 10.09 -85.31 -0.86 -13.51 16 14 C 0.03 0.78 4.37 71.98 0.31 1.10 16 15 C 0.13 2.65 3.50 30.59 0.11 2.75 16 16 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 17 O -0.56 -12.37 10.61 -144.35 -1.53 -13.90 16 18 C 0.03 0.36 4.48 86.30 0.39 0.75 16 19 N -0.51 -8.22 5.47 -897.72 -4.91 -13.13 16 20 C 0.07 0.93 6.60 85.38 0.56 1.49 16 21 C -0.07 -1.11 6.33 -19.68 -0.12 -1.23 16 22 C -0.15 -1.83 10.12 22.31 0.23 -1.61 16 23 C 0.09 1.24 11.19 84.71 0.95 2.19 16 24 N -0.51 -9.78 10.36 -195.82 -2.03 -11.81 16 25 C 0.10 1.85 11.19 84.62 0.95 2.80 16 26 C -0.17 -2.89 6.31 -19.71 -0.12 -3.02 16 27 C 0.09 1.50 4.94 85.42 0.42 1.92 16 28 C -0.16 -6.96 8.96 22.11 0.20 -6.76 16 29 C -0.21 -9.93 9.74 22.48 0.22 -9.71 16 30 H 0.29 13.77 8.30 -92.70 -0.77 13.00 16 31 H 0.11 6.06 6.16 -2.91 -0.02 6.04 16 32 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.07 1.69 7.64 -2.39 -0.02 1.67 16 34 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 35 H 0.38 5.78 8.45 -74.05 -0.63 5.16 16 36 H 0.06 0.71 7.83 -2.39 -0.02 0.69 16 37 H 0.11 1.26 8.13 -2.38 -0.02 1.24 16 38 H 0.08 0.79 7.81 -2.39 -0.02 0.77 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 41 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 43 H 0.09 1.82 7.34 -2.39 -0.02 1.80 16 44 H 0.07 1.00 6.89 -2.39 -0.02 0.98 16 45 H 0.13 4.43 6.27 -2.91 -0.02 4.41 16 46 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -68.46 378.11 -1.50 -69.96 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.38 Total: 31.25 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 5.18 Total: -45.41 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -6.70 Total: -68.78 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -2.39 Total: -27.41 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -68.46 -1.50 -69.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857874709.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.286 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds