Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99601 * 2 1 4 4 H 1.48499 * 109.47071 * 270.00094 * 3 2 1 5 5 H 1.48495 * 109.47366 * 30.00534 * 3 2 1 6 6 H 1.48506 * 109.47030 * 150.00192 * 3 2 1 7 7 C 1.37871 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99639 * 186.11908 * 7 2 1 9 9 C 1.50700 * 120.00072 * 6.11230 * 7 2 1 10 10 H 1.08996 * 109.47381 * 25.85496 * 9 7 2 11 11 C 1.52999 * 109.47088 * 145.85367 * 9 7 2 12 12 C 1.50690 * 109.47380 * 295.00259 * 11 9 7 13 13 O 1.21288 * 119.99880 * 359.97438 * 12 11 9 14 14 N 1.34780 * 120.00336 * 179.97438 * 12 11 9 15 15 C 1.46504 * 120.00174 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.46700 * 35.00057 * 15 14 12 17 17 C 1.53000 * 109.47035 * 275.00274 * 15 14 12 18 18 O 1.42896 * 109.47009 * 294.99698 * 17 15 14 19 19 C 1.50695 * 109.47115 * 155.00080 * 15 14 12 20 20 C 1.38231 * 119.61928 * 205.00447 * 19 15 14 21 21 C 1.38626 * 119.16080 * 180.02562 * 20 19 15 22 22 C 1.38671 * 118.42010 * 359.97438 * 21 20 19 23 23 C 1.38176 * 119.16609 * 0.27901 * 22 21 20 24 24 N 1.31861 * 119.61954 * 25.02177 * 19 15 14 25 25 C 1.50706 * 109.47043 * 265.85060 * 9 7 2 26 26 C 1.38227 * 120.00255 * 303.46126 * 25 9 7 27 27 C 1.38237 * 119.99952 * 179.78516 * 26 25 9 28 28 C 1.38237 * 119.99760 * 0.44707 * 27 26 25 29 29 C 1.38233 * 120.00162 * 359.80712 * 28 27 26 30 30 C 1.38230 * 119.99792 * 359.97438 * 29 28 27 31 31 H 0.96993 * 120.00030 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47440 * 174.99202 * 11 9 7 33 33 H 1.09004 * 109.46962 * 55.00212 * 11 9 7 34 34 H 0.96995 * 119.99789 * 0.02562 * 14 12 11 35 35 H 1.08998 * 109.47450 * 54.99874 * 17 15 14 36 36 H 1.09002 * 109.46502 * 175.00129 * 17 15 14 37 37 H 0.96700 * 114.00054 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.41686 * 359.97438 * 20 19 15 39 39 H 1.08000 * 120.78804 * 180.02562 * 21 20 19 40 40 H 1.08007 * 120.41640 * 179.97438 * 22 21 20 41 41 H 1.08005 * 119.61854 * 179.70372 * 23 22 21 42 42 H 1.07995 * 120.00486 * 359.97438 * 26 25 9 43 43 H 1.08004 * 120.00305 * 180.26833 * 27 26 25 44 44 H 1.08001 * 120.00082 * 179.83558 * 28 27 26 45 45 H 1.07999 * 119.99923 * 180.02562 * 29 28 27 46 46 H 1.08009 * 119.99813 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2575 -2.4953 -0.1401 10 1 0.3201 -2.3214 -0.6683 11 6 2.1103 -3.4909 -0.9291 12 6 2.2985 -2.9863 -2.3365 13 8 1.7993 -1.9342 -2.6753 14 7 3.0216 -3.7042 -3.2187 15 6 3.2041 -3.2139 -4.5872 16 1 3.2761 -2.1263 -4.5768 17 6 2.0097 -3.6378 -5.4443 18 8 1.9836 -5.0623 -5.5535 19 6 4.4686 -3.7956 -5.1647 20 6 5.1260 -3.1275 -6.1808 21 6 6.2881 -3.6715 -6.7055 22 6 6.7480 -4.8722 -6.1859 23 6 6.0345 -5.4852 -5.1738 24 7 4.9350 -4.9361 -4.6953 25 6 0.9666 -3.0567 1.2279 26 6 2.0020 -3.2922 2.1129 27 6 1.7346 -3.8030 3.3693 28 6 0.4328 -4.0870 3.7373 29 6 -0.6021 -3.8564 2.8503 30 6 -0.3352 -3.3414 1.5956 31 1 -0.4850 0.8400 0.0004 32 1 1.6095 -4.4587 -0.9539 33 1 3.0827 -3.5974 -0.4482 34 1 3.4206 -4.5457 -2.9478 35 1 1.0871 -3.2921 -4.9782 36 1 2.1016 -3.1988 -6.4378 37 1 1.2509 -5.4027 -6.0850 38 1 4.7387 -2.1941 -6.5615 39 1 6.8231 -3.1716 -7.4994 40 1 7.6497 -5.3250 -6.5711 41 1 6.3834 -6.4229 -4.7671 42 1 3.0195 -3.0743 1.8240 43 1 2.5432 -3.9829 4.0624 44 1 0.2241 -4.4885 4.7179 45 1 -1.6193 -4.0779 3.1380 46 1 -1.1439 -3.1609 0.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908483398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = -47.253532 kcal Electronic energy + Delta-G solvation = -29024.546532 eV Core-core repulsion = 25071.011032 eV Total energy + Delta-G solvation = -3953.535500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44955 -40.46690 -39.67774 -37.94727 -35.93600 -35.39749 -33.45545 -33.27611 -32.59894 -31.49171 -30.49378 -29.30535 -27.36038 -25.19241 -24.54468 -24.25817 -23.14105 -22.31636 -21.34943 -20.81157 -18.73994 -18.46313 -18.17230 -17.67451 -17.33526 -17.01127 -16.53326 -16.41687 -16.24884 -15.84754 -15.67084 -15.45209 -15.27837 -15.00131 -14.50321 -14.29160 -14.25071 -13.97326 -13.90889 -13.64188 -13.53056 -13.36544 -13.18243 -12.91823 -12.82848 -12.51609 -12.45033 -12.31920 -11.82055 -11.68233 -11.30150 -11.07458 -10.94760 -10.77344 -10.63212 -10.40381 -10.30705 -10.03622 -9.75971 -9.53280 -9.17826 -8.02508 -6.04783 0.17555 0.42502 0.78858 0.85381 1.35786 1.40023 1.45193 1.98027 2.35268 2.47370 2.89714 3.17478 3.19998 3.32624 3.37693 3.85517 4.06692 4.14176 4.18291 4.25723 4.26583 4.29642 4.36092 4.36785 4.42889 4.51206 4.56215 4.64043 4.66963 4.75131 4.77480 4.86343 4.93963 5.00428 5.20468 5.25777 5.29857 5.38791 5.53896 5.62526 5.66366 5.80230 5.82366 5.84558 5.96557 6.19185 6.43420 6.48125 6.82175 6.84207 7.02140 7.10115 7.57358 7.61023 9.07386 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.003268 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.995589 B = 8564.888702 C = 9630.045373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.484 4.484 8 H 0.044 0.956 9 C 0.085 3.915 10 H 0.026 0.974 11 C -0.115 4.115 12 C 0.514 3.486 13 O -0.554 6.554 14 N -0.712 5.712 15 C 0.193 3.807 16 H 0.096 0.904 17 C 0.078 3.922 18 O -0.570 6.570 19 C 0.118 3.882 20 C -0.178 4.178 21 C -0.073 4.073 22 C -0.172 4.172 23 C 0.088 3.912 24 N -0.494 5.494 25 C -0.045 4.045 26 C -0.129 4.129 27 C -0.127 4.127 28 C -0.148 4.148 29 C -0.128 4.128 30 C -0.143 4.143 31 H 0.253 0.747 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.412 0.588 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.391 0.609 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.176 0.824 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.133 0.867 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -13.190 -10.974 20.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.762 3.238 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.066 3.934 10 H 0.044 0.956 11 C -0.155 4.155 12 C 0.301 3.699 13 O -0.431 6.431 14 N -0.366 5.366 15 C 0.087 3.913 16 H 0.114 0.886 17 C -0.001 4.001 18 O -0.377 6.377 19 C -0.020 4.020 20 C -0.198 4.198 21 C -0.099 4.099 22 C -0.191 4.191 23 C -0.069 4.069 24 N -0.203 5.203 25 C -0.046 4.046 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.165 4.165 29 C -0.146 4.146 30 C -0.162 4.162 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.240 0.760 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.131 0.869 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.430 -12.664 -10.160 19.297 hybrid contribution 0.031 1.469 -1.070 1.818 sum 10.461 -11.195 -11.230 18.997 Atomic orbital electron populations 1.70055 1.07068 1.26345 1.52135 1.25453 0.95313 1.01598 0.94939 0.85929 0.79264 0.81152 0.77505 1.21355 1.21188 1.19009 1.20939 0.92128 0.91023 1.48074 0.93777 1.17599 0.95628 0.91659 0.88491 0.95609 1.21651 1.02425 0.99705 0.91732 1.20991 0.77359 0.83709 0.87807 1.90720 1.48883 1.23901 1.79564 1.45842 1.54687 1.25915 1.10172 1.19849 0.91115 0.98194 0.82185 0.88618 1.22419 0.96615 0.82358 0.98745 1.86523 1.54732 1.19972 1.76481 1.20921 0.95027 0.91715 0.94322 1.22098 0.97482 1.02151 0.98045 1.21939 0.94288 0.95082 0.98545 1.22517 1.02240 0.96521 0.97816 1.23232 0.89907 0.99941 0.93865 1.67168 1.13852 1.10230 1.29068 1.20572 0.93141 0.92484 0.98402 1.21030 0.98830 1.00403 0.94438 1.21367 0.97619 0.99488 0.95971 1.21261 0.92558 1.02543 1.00179 1.21288 0.99991 0.99802 0.93497 1.21105 0.96318 1.01156 0.97593 0.93758 0.89634 0.89152 0.75069 0.94465 0.90710 0.76012 0.83544 0.81710 0.81589 0.80663 0.86901 0.84180 0.83795 0.84948 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 12.87 21.45 0.28 -56.70 16 2 C 0.03 1.51 5.45 84.65 0.46 1.98 16 3 Si 0.93 47.37 29.54 68.60 2.03 49.39 16 4 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.48 -27.32 6.37 25.60 0.16 -27.15 16 8 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 9 C 0.09 4.37 1.67 -12.28 -0.02 4.34 16 10 H 0.03 1.54 6.98 -2.39 -0.02 1.52 16 11 C -0.12 -4.83 4.95 29.84 0.15 -4.68 16 12 C 0.51 22.21 7.54 87.65 0.66 22.87 16 13 O -0.55 -29.22 14.65 -3.05 -0.04 -29.27 16 14 N -0.71 -24.71 5.00 -446.09 -2.23 -26.94 16 15 C 0.19 5.93 2.62 44.24 0.12 6.05 16 16 H 0.10 3.22 7.55 -2.39 -0.02 3.20 16 17 C 0.08 2.11 6.84 71.98 0.49 2.61 16 18 O -0.57 -14.35 13.09 -148.98 -1.95 -16.30 16 19 C 0.12 3.09 5.41 42.55 0.23 3.32 16 20 C -0.18 -3.63 9.77 22.36 0.22 -3.41 16 21 C -0.07 -1.10 10.18 22.47 0.23 -0.87 16 22 C -0.17 -2.44 10.11 22.36 0.23 -2.22 16 23 C 0.09 1.66 11.18 84.67 0.95 2.61 16 24 N -0.49 -12.80 9.04 -183.89 -1.66 -14.46 16 25 C -0.05 -2.11 4.77 -19.87 -0.09 -2.20 16 26 C -0.13 -5.27 8.86 22.27 0.20 -5.07 16 27 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 28 C -0.15 -4.75 10.05 22.27 0.22 -4.53 16 29 C -0.13 -4.63 10.05 22.27 0.22 -4.40 16 30 C -0.14 -6.35 9.67 22.27 0.22 -6.14 16 31 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.09 3.49 7.77 -2.38 -0.02 3.47 16 34 H 0.41 13.26 7.63 -92.71 -0.71 12.55 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.39 6.29 9.12 -74.06 -0.68 5.61 16 38 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.11 4.49 7.76 -2.91 -0.02 4.47 16 43 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 44 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 45 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 46 H 0.09 4.40 7.95 -2.91 -0.02 4.38 16 Total: -1.00 -79.25 392.74 0.90 -78.35 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.38 Total: 36.88 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 4.86 Total: -20.96 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.62 Total: -98.10 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.99 Total: -45.57 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -79.25 0.90 -78.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908483398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.098 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds