Wall clock time and date at job start Sat Apr 11 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47055 * 264.73003 * 3 2 1 5 5 H 1.48504 * 109.46957 * 24.72698 * 3 2 1 6 6 H 1.48494 * 109.47278 * 144.72342 * 3 2 1 7 7 C 1.37875 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99997 * 4.99486 * 7 2 1 9 9 C 1.50696 * 120.00142 * 184.98976 * 7 2 1 10 10 H 1.09007 * 109.47076 * 25.13233 * 9 7 2 11 11 C 1.53000 * 109.47104 * 145.12968 * 9 7 2 12 12 C 1.50709 * 109.47062 * 295.00043 * 11 9 7 13 13 O 1.21275 * 119.99638 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99677 * 180.02562 * 12 11 9 15 15 C 1.46504 * 119.99467 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47317 * 324.99836 * 15 14 12 17 17 C 1.53000 * 109.47220 * 85.00022 * 15 14 12 18 18 O 1.42906 * 109.47003 * 64.99653 * 17 15 14 19 19 C 1.50697 * 109.46973 * 204.99718 * 15 14 12 20 20 C 1.38676 * 120.41790 * 140.00232 * 19 15 14 21 21 C 1.38632 * 118.41883 * 180.02562 * 20 19 15 22 22 C 1.38228 * 119.16236 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76149 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72805 * 359.70403 * 23 22 21 25 25 C 1.50703 * 109.47351 * 265.13013 * 9 7 2 26 26 C 1.38231 * 119.99571 * 304.69085 * 25 9 7 27 27 C 1.38240 * 119.99566 * 179.79074 * 26 25 9 28 28 C 1.38234 * 120.00054 * 0.43596 * 27 26 25 29 29 C 1.38238 * 120.00087 * 359.81774 * 28 27 26 30 30 C 1.38234 * 119.99894 * 124.96744 * 25 9 7 31 31 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47300 * 175.00469 * 11 9 7 33 33 H 1.08993 * 109.47074 * 55.00014 * 11 9 7 34 34 H 0.96993 * 120.00689 * 359.97438 * 14 12 11 35 35 H 1.08992 * 109.47555 * 184.99655 * 17 15 14 36 36 H 1.09007 * 109.46939 * 304.99979 * 17 15 14 37 37 H 0.96702 * 113.99863 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.78648 * 359.97438 * 20 19 15 39 39 H 1.07999 * 120.41688 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.61534 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.61716 * 180.31633 * 24 23 22 42 42 H 1.07997 * 120.00741 * 359.97438 * 26 25 9 43 43 H 1.07995 * 120.00130 * 180.27877 * 27 26 25 44 44 H 1.07999 * 120.00426 * 179.83590 * 28 27 26 45 45 H 1.07995 * 120.00283 * 179.97438 * 29 28 27 46 46 H 1.08000 * 120.00477 * 359.97400 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6080 1.9821 -1.3941 5 1 1.3953 2.6823 0.5857 6 1 3.4865 1.4750 0.8085 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1276 -0.0805 9 6 3.5072 -1.1965 0.1140 10 1 3.8351 -0.2863 0.6163 11 6 3.9555 -2.4152 0.9231 12 6 3.4490 -2.2933 2.3373 13 8 2.7944 -1.3267 2.6657 14 7 3.7245 -3.2581 3.2372 15 6 3.2317 -3.1399 4.6117 16 1 3.2411 -2.0922 4.9123 17 6 1.8022 -3.6798 4.6892 18 8 1.8064 -5.0810 4.4082 19 6 4.1196 -3.9350 5.5338 20 6 4.4595 -3.4377 6.7829 21 6 5.2792 -4.2036 7.5973 22 6 5.7270 -5.4290 7.1407 23 7 5.3834 -5.8704 5.9467 24 6 4.6012 -5.1713 5.1475 25 6 4.1150 -1.2569 -1.2637 26 6 3.7655 -2.2765 -2.1291 27 6 4.3198 -2.3295 -3.3944 28 6 5.2303 -1.3679 -3.7910 29 6 5.5837 -0.3512 -2.9236 30 6 5.0262 -0.2958 -1.6598 31 1 -0.4850 0.8401 -0.0004 32 1 5.0444 -2.4660 0.9303 33 1 3.5525 -3.3206 0.4696 34 1 4.2484 -4.0310 2.9746 35 1 1.4038 -3.5111 5.6896 36 1 1.1790 -3.1645 3.9582 37 1 0.9311 -5.4910 4.4394 38 1 4.0948 -2.4762 7.1130 39 1 5.5637 -3.8476 8.5765 40 1 6.3663 -6.0315 7.7690 41 1 4.3371 -5.5679 4.1783 42 1 3.0573 -3.0301 -1.8179 43 1 4.0434 -3.1235 -4.0722 44 1 5.6653 -1.4107 -4.7785 45 1 6.2953 0.3999 -3.2332 46 1 5.3023 0.4985 -0.9822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910965564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:55 Heat of formation + Delta-G solvation = -22.870523 kcal Electronic energy + Delta-G solvation = -29120.999172 eV Core-core repulsion = 25168.520998 eV Total energy + Delta-G solvation = -3952.478174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55751 -39.21371 -38.43565 -36.92668 -34.73435 -33.97607 -32.61687 -31.72253 -31.27601 -30.21855 -29.25047 -28.16649 -25.83645 -24.05930 -23.75831 -22.69108 -21.89970 -21.23318 -20.03735 -19.23885 -17.56700 -17.38373 -16.95734 -16.55561 -16.38377 -16.04902 -15.52093 -15.15044 -14.63895 -14.57383 -14.27935 -14.15540 -13.82371 -13.76422 -13.40692 -13.22750 -13.08139 -12.78586 -12.66578 -12.48347 -12.36813 -12.12740 -11.85877 -11.80484 -11.44900 -11.13735 -10.80365 -10.51427 -10.38486 -10.07377 -9.91592 -9.86508 -9.61776 -9.54753 -9.21200 -9.09064 -8.94666 -8.66950 -8.43576 -8.23757 -7.82639 -5.99240 -3.95622 0.95866 1.13259 2.07699 2.13479 3.40223 3.41957 3.44664 3.45868 3.49603 3.75627 4.23787 4.30818 4.50689 4.55948 4.63059 4.68206 4.84401 4.94545 5.22314 5.25559 5.35177 5.41141 5.42934 5.50668 5.54480 5.64530 5.67891 5.81368 5.84628 5.93922 5.95567 6.01750 6.07976 6.14366 6.23266 6.32396 6.54080 6.61381 6.68534 6.81139 6.82446 7.03088 7.12869 7.25109 7.57577 7.62769 7.71861 7.81763 7.84541 7.99314 8.52536 8.95839 9.00415 9.65654 11.13984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003223 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.956637 B = 8686.743524 C = 9658.880922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.087 3.913 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.071 0.929 9 C 0.046 3.954 10 H 0.058 0.942 11 C -0.115 4.115 12 C 0.517 3.483 13 O -0.500 6.500 14 N -0.736 5.736 15 C 0.196 3.804 16 H 0.107 0.893 17 C 0.067 3.933 18 O -0.568 6.568 19 C -0.133 4.133 20 C -0.069 4.069 21 C -0.175 4.175 22 C 0.092 3.908 23 N -0.486 5.486 24 C 0.129 3.871 25 C -0.040 4.040 26 C -0.101 4.101 27 C -0.126 4.126 28 C -0.150 4.150 29 C -0.124 4.124 30 C -0.141 4.141 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.378 0.622 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -8.975 10.031 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.115 4.115 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.027 3.973 10 H 0.076 0.924 11 C -0.155 4.155 12 C 0.304 3.696 13 O -0.372 6.372 14 N -0.392 5.392 15 C 0.090 3.910 16 H 0.125 0.875 17 C -0.012 4.012 18 O -0.374 6.374 19 C -0.135 4.135 20 C -0.095 4.095 21 C -0.195 4.195 22 C -0.065 4.065 23 N -0.195 5.195 24 C -0.029 4.029 25 C -0.040 4.040 26 C -0.119 4.119 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.143 4.143 30 C -0.159 4.159 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.225 0.775 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.464 -8.800 9.915 16.889 hybrid contribution -0.484 1.400 0.208 1.496 sum 9.980 -7.399 10.123 16.025 Atomic orbital electron populations 1.69883 1.06306 1.26743 1.50746 1.24847 0.94439 0.98657 0.93548 0.86979 0.80606 0.84207 0.78385 1.20258 1.21852 1.18662 1.20584 0.87353 0.94404 1.49743 0.91094 1.18306 0.97235 0.94465 0.87284 0.92439 1.21642 0.99523 1.02513 0.91854 1.20858 0.79598 0.81860 0.87259 1.90739 1.36362 1.30904 1.79185 1.46186 1.58017 1.25560 1.09434 1.19682 0.90294 0.98999 0.81999 0.87498 1.22617 0.96709 0.82217 0.99692 1.86409 1.34693 1.21927 1.94329 1.20897 0.99485 0.97066 0.96057 1.21492 0.95348 0.99655 0.93043 1.22087 0.99810 0.96432 1.01191 1.22771 0.97246 0.93847 0.92604 1.67739 1.12129 1.34938 1.04647 1.22572 0.91249 0.90088 0.98957 1.20789 0.91534 0.92613 0.99103 1.20978 0.98808 0.99000 0.93156 1.21070 0.97885 0.98925 0.96538 1.20867 1.00310 0.96469 0.99128 1.20963 1.00475 0.98375 0.94439 1.21081 0.98491 0.99835 0.96486 0.92887 0.91338 0.89690 0.77029 0.93396 0.91423 0.77513 0.84730 0.84848 0.82987 0.82553 0.86170 0.87136 0.87387 0.87339 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 22.52 27.15 -169.99 -4.62 17.90 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 6 H -0.26 -6.52 6.06 56.52 0.34 -6.18 16 7 C -0.48 -13.04 6.87 -34.44 -0.24 -13.28 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 9 C 0.05 1.04 1.21 -92.92 -0.11 0.93 16 10 H 0.06 1.40 4.70 -51.93 -0.24 1.15 16 11 C -0.12 -2.11 4.96 -27.88 -0.14 -2.25 16 12 C 0.52 9.79 7.54 -10.98 -0.08 9.71 16 13 O -0.50 -11.73 14.65 5.56 0.08 -11.65 16 14 N -0.74 -10.74 4.98 -54.93 -0.27 -11.02 16 15 C 0.20 2.62 2.62 -69.08 -0.18 2.44 16 16 H 0.11 1.52 7.47 -51.93 -0.39 1.13 16 17 C 0.07 0.87 6.84 37.16 0.25 1.12 16 18 O -0.57 -6.75 12.04 -35.23 -0.42 -7.17 16 19 C -0.13 -1.55 4.84 -104.48 -0.51 -2.06 16 20 C -0.07 -0.69 9.82 -39.27 -0.39 -1.08 16 21 C -0.18 -1.55 10.11 -39.44 -0.40 -1.95 16 22 C 0.09 0.91 11.18 -17.55 -0.20 0.71 16 23 N -0.49 -5.98 10.36 -13.25 -0.14 -6.12 16 24 C 0.13 1.56 9.23 -17.55 -0.16 1.40 16 25 C -0.04 -0.82 4.55 -104.62 -0.48 -1.30 16 26 C -0.10 -1.95 8.87 -39.58 -0.35 -2.31 16 27 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 28 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 29 C -0.12 -2.13 10.05 -39.58 -0.40 -2.52 16 30 C -0.14 -2.74 9.43 -39.58 -0.37 -3.11 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.47 7.86 -51.93 -0.41 1.06 16 34 H 0.40 4.91 6.91 -40.82 -0.28 4.63 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.38 3.13 9.12 45.56 0.42 3.55 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.16 1.83 6.68 -52.48 -0.35 1.48 16 42 H 0.12 2.28 7.80 -52.49 -0.41 1.87 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -34.85 384.73 -8.94 -43.79 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.51 Total: 11.87 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.64 Total: -16.47 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.36 Total: -44.06 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.34 Total: -18.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.62 Total: 17.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.85 -8.94 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910965564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.920 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds