Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00114 * 2 1 4 4 H 1.48493 * 109.47055 * 264.73003 * 3 2 1 5 5 H 1.48504 * 109.46957 * 24.72698 * 3 2 1 6 6 H 1.48494 * 109.47278 * 144.72342 * 3 2 1 7 7 C 1.37875 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99997 * 4.99486 * 7 2 1 9 9 C 1.50696 * 120.00142 * 184.98976 * 7 2 1 10 10 H 1.09007 * 109.47076 * 25.13233 * 9 7 2 11 11 C 1.53000 * 109.47104 * 145.12968 * 9 7 2 12 12 C 1.50709 * 109.47062 * 295.00043 * 11 9 7 13 13 O 1.21275 * 119.99638 * 359.97438 * 12 11 9 14 14 N 1.34774 * 119.99677 * 180.02562 * 12 11 9 15 15 C 1.46504 * 119.99467 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47317 * 324.99836 * 15 14 12 17 17 C 1.53000 * 109.47220 * 85.00022 * 15 14 12 18 18 O 1.42906 * 109.47003 * 64.99653 * 17 15 14 19 19 C 1.50697 * 109.46973 * 204.99718 * 15 14 12 20 20 C 1.38676 * 120.41790 * 140.00232 * 19 15 14 21 21 C 1.38632 * 118.41883 * 180.02562 * 20 19 15 22 22 C 1.38228 * 119.16236 * 359.97438 * 21 20 19 23 23 N 1.31854 * 120.76149 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.72805 * 359.70403 * 23 22 21 25 25 C 1.50703 * 109.47351 * 265.13013 * 9 7 2 26 26 C 1.38231 * 119.99571 * 304.69085 * 25 9 7 27 27 C 1.38240 * 119.99566 * 179.79074 * 26 25 9 28 28 C 1.38234 * 120.00054 * 0.43596 * 27 26 25 29 29 C 1.38238 * 120.00087 * 359.81774 * 28 27 26 30 30 C 1.38234 * 119.99894 * 124.96744 * 25 9 7 31 31 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47300 * 175.00469 * 11 9 7 33 33 H 1.08993 * 109.47074 * 55.00014 * 11 9 7 34 34 H 0.96993 * 120.00689 * 359.97438 * 14 12 11 35 35 H 1.08992 * 109.47555 * 184.99655 * 17 15 14 36 36 H 1.09007 * 109.46939 * 304.99979 * 17 15 14 37 37 H 0.96702 * 113.99863 * 180.02562 * 18 17 15 38 38 H 1.07993 * 120.78648 * 359.97438 * 20 19 15 39 39 H 1.07999 * 120.41688 * 180.02562 * 21 20 19 40 40 H 1.07997 * 119.61534 * 179.97438 * 22 21 20 41 41 H 1.08004 * 119.61716 * 180.31633 * 24 23 22 42 42 H 1.07997 * 120.00741 * 359.97438 * 26 25 9 43 43 H 1.07995 * 120.00130 * 180.27877 * 27 26 25 44 44 H 1.07999 * 120.00426 * 179.83590 * 28 27 26 45 45 H 1.07995 * 120.00283 * 179.97438 * 29 28 27 46 46 H 1.08000 * 120.00477 * 359.97400 * 30 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6080 1.9821 -1.3941 5 1 1.3953 2.6823 0.5857 6 1 3.4865 1.4750 0.8085 7 6 2.0045 -1.1940 0.0005 8 1 1.4676 -2.1276 -0.0805 9 6 3.5072 -1.1965 0.1140 10 1 3.8351 -0.2863 0.6163 11 6 3.9555 -2.4152 0.9231 12 6 3.4490 -2.2933 2.3373 13 8 2.7944 -1.3267 2.6657 14 7 3.7245 -3.2581 3.2372 15 6 3.2317 -3.1399 4.6117 16 1 3.2411 -2.0922 4.9123 17 6 1.8022 -3.6798 4.6892 18 8 1.8064 -5.0810 4.4082 19 6 4.1196 -3.9350 5.5338 20 6 4.4595 -3.4377 6.7829 21 6 5.2792 -4.2036 7.5973 22 6 5.7270 -5.4290 7.1407 23 7 5.3834 -5.8704 5.9467 24 6 4.6012 -5.1713 5.1475 25 6 4.1150 -1.2569 -1.2637 26 6 3.7655 -2.2765 -2.1291 27 6 4.3198 -2.3295 -3.3944 28 6 5.2303 -1.3679 -3.7910 29 6 5.5837 -0.3512 -2.9236 30 6 5.0262 -0.2958 -1.6598 31 1 -0.4850 0.8401 -0.0004 32 1 5.0444 -2.4660 0.9303 33 1 3.5525 -3.3206 0.4696 34 1 4.2484 -4.0310 2.9746 35 1 1.4038 -3.5111 5.6896 36 1 1.1790 -3.1645 3.9582 37 1 0.9311 -5.4910 4.4394 38 1 4.0948 -2.4762 7.1130 39 1 5.5637 -3.8476 8.5765 40 1 6.3663 -6.0315 7.7690 41 1 4.3371 -5.5679 4.1783 42 1 3.0573 -3.0301 -1.8179 43 1 4.0434 -3.1235 -4.0722 44 1 5.6653 -1.4107 -4.7785 45 1 6.2953 0.3999 -3.2332 46 1 5.3023 0.4985 -0.9822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910965564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = -47.975248 kcal Electronic energy + Delta-G solvation = -29122.087795 eV Core-core repulsion = 25168.520998 eV Total energy + Delta-G solvation = -3953.566796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52317 -40.58985 -39.81578 -38.05313 -36.05422 -35.56456 -33.78051 -33.47654 -32.31165 -31.60579 -30.54688 -29.38615 -27.65206 -25.10312 -24.61723 -24.23312 -23.29977 -22.34827 -21.39044 -20.80364 -19.02588 -18.66346 -18.34899 -17.83499 -17.38733 -17.22913 -16.65036 -16.52791 -16.12950 -15.99788 -15.56250 -15.48846 -15.16161 -14.87650 -14.75089 -14.47872 -14.35240 -14.15251 -13.96553 -13.84776 -13.81193 -13.44806 -13.35013 -13.02957 -12.89553 -12.74958 -12.38711 -12.05095 -11.88659 -11.81482 -11.47492 -11.10783 -11.00960 -10.77009 -10.72837 -10.49316 -10.38526 -10.07078 -9.86938 -9.63581 -9.31013 -8.21130 -6.16993 0.14547 0.34085 0.67131 0.72523 1.30814 1.33401 1.39382 1.90938 2.28163 2.40127 2.88608 3.07999 3.22792 3.29769 3.41510 3.74995 3.94080 4.05073 4.06474 4.11017 4.13094 4.27010 4.30285 4.31069 4.38482 4.44710 4.49066 4.58388 4.59404 4.65121 4.76181 4.84582 4.86838 4.89084 5.08849 5.18874 5.21128 5.28104 5.37699 5.40562 5.57227 5.70413 5.75886 5.77335 5.82162 6.02286 6.33118 6.36960 6.67909 6.79696 6.81554 7.04180 7.46114 7.50915 8.96177 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003223 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.956637 B = 8686.743524 C = 9658.880922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.028 3.972 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.461 4.461 8 H 0.035 0.965 9 C 0.049 3.951 10 H 0.039 0.961 11 C -0.112 4.112 12 C 0.515 3.485 13 O -0.554 6.554 14 N -0.718 5.718 15 C 0.196 3.804 16 H 0.096 0.904 17 C 0.075 3.925 18 O -0.573 6.573 19 C -0.141 4.141 20 C -0.074 4.074 21 C -0.165 4.165 22 C 0.087 3.913 23 N -0.511 5.511 24 C 0.117 3.883 25 C -0.064 4.064 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.141 4.141 29 C -0.123 4.123 30 C -0.158 4.158 31 H 0.258 0.742 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.394 0.606 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.420 -9.689 10.070 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.169 4.169 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.030 3.970 10 H 0.057 0.943 11 C -0.152 4.152 12 C 0.303 3.697 13 O -0.430 6.430 14 N -0.373 5.373 15 C 0.090 3.910 16 H 0.114 0.886 17 C -0.005 4.005 18 O -0.380 6.380 19 C -0.143 4.143 20 C -0.100 4.100 21 C -0.185 4.185 22 C -0.070 4.070 23 N -0.219 5.219 24 C -0.039 4.039 25 C -0.065 4.065 26 C -0.137 4.137 27 C -0.142 4.142 28 C -0.158 4.158 29 C -0.141 4.141 30 C -0.176 4.176 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.243 0.757 38 H 0.169 0.831 39 H 0.186 0.814 40 H 0.198 0.802 41 H 0.169 0.831 42 H 0.128 0.872 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.158 0.842 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.747 -9.577 9.959 19.490 hybrid contribution -1.388 1.434 0.218 2.008 sum 12.359 -8.143 10.177 17.962 Atomic orbital electron populations 1.70026 1.07888 1.27071 1.54376 1.25539 0.94982 1.01880 0.94480 0.86177 0.79767 0.80667 0.78791 1.19316 1.22542 1.17455 1.20774 0.89958 0.92414 1.46686 0.94717 1.18151 0.94173 0.95372 0.89303 0.94295 1.21580 1.01561 1.01001 0.91085 1.20983 0.78924 0.81821 0.87960 1.90719 1.38967 1.33194 1.80141 1.45972 1.56933 1.24715 1.09645 1.19717 0.91029 0.98904 0.81357 0.88614 1.22424 0.95944 0.82438 0.99649 1.86377 1.36184 1.21117 1.94336 1.20686 1.00087 0.96977 0.96591 1.21795 0.95267 1.00521 0.92450 1.22445 0.98294 0.95561 1.02181 1.23346 0.97000 0.94589 0.92035 1.67746 1.12754 1.35592 1.05845 1.22501 0.91932 0.90360 0.99149 1.20531 0.93572 0.94410 0.97945 1.21025 0.99412 0.98838 0.94460 1.21414 0.97249 0.99855 0.95713 1.21344 0.98978 0.95074 1.00451 1.21345 1.00289 0.99192 0.93302 1.21221 0.98947 0.99489 0.97924 0.93328 0.88004 0.88832 0.75564 0.91190 0.95301 0.75710 0.83086 0.81440 0.80156 0.83081 0.87182 0.84270 0.83547 0.84171 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 2 C 0.03 1.67 5.47 84.65 0.46 2.13 16 3 Si 0.92 47.89 27.15 68.60 1.86 49.76 16 4 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 5 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 6 H -0.25 -12.41 6.06 99.48 0.60 -11.81 16 7 C -0.46 -26.01 6.87 25.60 0.18 -25.84 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 9 C 0.05 2.26 1.21 -12.29 -0.01 2.25 16 10 H 0.04 1.93 4.70 -2.38 -0.01 1.92 16 11 C -0.11 -4.17 4.96 29.85 0.15 -4.03 16 12 C 0.52 20.16 7.54 87.66 0.66 20.83 16 13 O -0.55 -27.32 14.65 -3.01 -0.04 -27.37 16 14 N -0.72 -21.35 4.98 -446.09 -2.22 -23.57 16 15 C 0.20 5.31 2.62 44.24 0.12 5.43 16 16 H 0.10 2.82 7.47 -2.39 -0.02 2.81 16 17 C 0.07 2.00 6.84 71.98 0.49 2.49 16 18 O -0.57 -13.68 12.04 -148.98 -1.79 -15.47 16 19 C -0.14 -3.18 4.84 -19.77 -0.10 -3.28 16 20 C -0.07 -1.34 9.82 22.47 0.22 -1.12 16 21 C -0.17 -2.40 10.11 22.36 0.23 -2.18 16 22 C 0.09 1.48 11.18 84.69 0.95 2.43 16 23 N -0.51 -11.80 10.36 -195.84 -2.03 -13.83 16 24 C 0.12 2.75 9.23 84.67 0.78 3.54 16 25 C -0.06 -2.63 4.55 -19.87 -0.09 -2.72 16 26 C -0.12 -4.51 8.87 22.27 0.20 -4.31 16 27 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 28 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 29 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 30 C -0.16 -5.87 9.43 22.27 0.21 -5.66 16 31 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 32 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 33 H 0.09 3.29 7.86 -2.39 -0.02 3.28 16 34 H 0.41 10.11 6.91 -92.71 -0.64 9.46 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.39 6.51 9.12 -74.06 -0.68 5.84 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.17 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 41 H 0.15 3.53 6.68 -2.91 -0.02 3.51 16 42 H 0.11 4.27 7.80 -2.91 -0.02 4.25 16 43 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 45 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 46 H 0.11 3.95 7.95 -2.91 -0.02 3.92 16 Total: -1.00 -80.26 384.73 0.78 -79.48 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.41 Total: 33.52 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 5.11 Total: -20.96 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -3.95 Total: -98.96 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.84 Total: -42.84 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.86 Total: 49.76 kcal Total: -80.26 0.78 -79.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910965564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.507 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds