Wall clock time and date at job start Sat Apr 11 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48499 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47247 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.47104 * 60.00003 * 3 2 1 7 7 C 1.38812 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99604 * 155.05366 * 7 2 1 9 9 N 1.36941 * 120.00065 * 335.04228 * 7 2 1 10 10 C 1.46895 * 120.68886 * 331.87001 * 9 7 2 11 11 C 1.52669 * 109.34484 * 235.30832 * 10 9 7 12 12 C 1.53186 * 109.42823 * 303.77394 * 11 10 9 13 13 C 1.52628 * 109.35647 * 58.92861 * 12 11 10 14 14 C 1.53457 * 113.68564 * 74.05815 * 13 12 11 15 15 N 1.47665 * 85.96885 * 91.17785 * 14 13 12 16 16 C 1.34771 * 134.45637 * 204.28430 * 15 14 13 17 17 O 1.21659 * 120.00458 * 179.97438 * 16 15 14 18 18 C 1.46982 * 120.00186 * 0.02562 * 16 15 14 19 19 C 1.35805 * 125.13687 * 179.71525 * 18 16 15 20 20 C 1.46243 * 106.07816 * 179.89414 * 19 18 16 21 21 C 1.39707 * 134.18298 * 180.11469 * 20 19 18 22 22 C 1.36621 * 119.70921 * 180.31284 * 21 20 19 23 23 C 1.38835 * 120.44115 * 359.96408 * 22 21 20 24 24 C 1.37797 * 120.74874 * 0.02562 * 23 22 21 25 25 C 1.39029 * 119.85391 * 0.02562 * 24 23 22 26 26 O 1.34710 * 133.24903 * 179.97438 * 25 24 23 27 27 C 1.47677 * 91.09316 * 24.28815 * 15 14 13 28 28 C 1.47110 * 120.68626 * 152.14768 * 9 7 2 29 29 H 0.96996 * 119.99632 * 174.26731 * 1 2 3 30 30 H 1.08998 * 109.54168 * 355.23282 * 10 9 7 31 31 H 1.09004 * 109.53380 * 115.47627 * 10 9 7 32 32 H 1.08998 * 109.56540 * 183.71776 * 11 10 9 33 33 H 1.09005 * 109.34431 * 63.69096 * 11 10 9 34 34 H 1.09002 * 109.49120 * 298.95924 * 12 11 10 35 35 H 1.09005 * 109.48851 * 178.89230 * 12 11 10 36 36 H 1.09002 * 113.79306 * 205.44477 * 14 13 12 37 37 H 1.09000 * 113.79431 * 336.91271 * 14 13 12 38 38 H 1.08003 * 126.95498 * 0.02903 * 19 18 16 39 39 H 1.07997 * 120.15017 * 0.32045 * 21 20 19 40 40 H 1.07998 * 119.78014 * 179.97438 * 22 21 20 41 41 H 1.08008 * 119.62576 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.07343 * 179.97438 * 24 23 22 43 43 H 1.08997 * 113.79514 * 221.44885 * 27 15 14 44 44 H 1.08994 * 113.79584 * 89.97354 * 27 15 14 45 45 H 1.09002 * 109.63459 * 248.30727 * 28 9 7 46 46 H 1.09000 * 109.64288 * 8.91958 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0147 -1.2456 -0.3951 9 7 1.4214 -2.3330 0.4994 10 6 0.3970 -2.2437 1.5484 11 6 0.8164 -3.1021 2.7392 12 6 1.0561 -4.5408 2.2709 13 6 2.1427 -4.5495 1.1991 14 6 3.5562 -4.3239 1.7523 15 7 3.6346 -5.7943 1.8637 16 6 4.3509 -6.6464 2.6233 17 8 4.2029 -7.8472 2.4953 18 6 5.3102 -6.1252 3.6074 19 6 6.0795 -6.8862 4.4280 20 6 6.8721 -5.9497 5.2238 21 6 7.8354 -6.0954 6.2251 22 6 8.3993 -4.9859 6.7888 23 6 8.0219 -3.7164 6.3725 24 6 7.0738 -3.5512 5.3862 25 6 6.4852 -4.6652 4.7985 26 8 5.5541 -4.8179 3.8370 27 6 2.6137 -5.9569 0.8092 28 6 1.8061 -3.6627 0.0013 29 1 -0.4849 -0.8358 -0.0839 30 1 0.2917 -1.2069 1.8678 31 1 -0.5551 -2.6052 1.1597 32 1 0.0287 -3.0912 3.4924 33 1 1.7352 -2.7012 3.1675 34 1 0.1333 -4.9470 1.8567 35 1 1.3747 -5.1502 3.1167 36 1 4.2501 -3.9002 1.0263 37 1 3.5755 -3.8085 2.7125 38 1 6.1028 -7.9647 4.4805 39 1 8.1331 -7.0806 6.5522 40 1 9.1437 -5.0972 7.5632 41 1 8.4759 -2.8483 6.8274 42 1 6.7881 -2.5585 5.0710 43 1 1.8842 -6.7388 1.0201 44 1 3.0271 -6.0191 -0.1974 45 1 0.9771 -4.0989 -0.5560 46 1 2.6791 -3.5733 -0.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982138669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:11 Heat of formation + Delta-G solvation = 38.088676 kcal Electronic energy + Delta-G solvation = -29605.407285 eV Core-core repulsion = 25655.572500 eV Total energy + Delta-G solvation = -3949.834785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.61414 -41.92432 -39.78224 -38.82512 -37.75945 -34.62291 -33.91506 -32.46215 -31.93353 -31.36726 -30.47367 -27.66029 -27.44659 -27.10216 -24.74585 -24.05480 -23.68977 -22.68819 -22.26047 -20.94831 -19.41457 -19.27635 -18.89462 -18.49322 -17.66681 -17.36432 -16.99300 -16.77689 -16.31825 -15.92097 -15.68833 -15.45931 -15.25755 -15.12450 -14.96684 -14.76690 -14.41368 -14.22994 -14.04293 -13.93530 -13.49480 -13.33703 -13.29015 -12.97776 -12.89858 -12.76989 -12.55045 -12.05240 -11.97222 -11.88057 -11.86107 -11.72784 -11.39586 -11.36435 -11.35534 -11.08365 -10.41757 -10.01316 -9.71266 -9.33351 -8.87641 -8.19518 -5.35136 -0.55773 0.30426 0.71652 1.26355 1.61068 1.67289 1.68082 1.83409 1.91021 2.66760 2.67927 2.97982 3.17264 3.31664 3.53677 3.60520 3.71258 3.77674 3.85617 3.90102 4.10398 4.14871 4.22777 4.26710 4.28129 4.39024 4.44829 4.48230 4.50991 4.53525 4.62358 4.71394 4.77820 4.81638 4.84795 4.96649 5.01185 5.05651 5.15240 5.21354 5.22293 5.32496 5.33055 5.43659 5.47336 5.56299 5.89133 5.98903 6.31940 6.44605 6.72126 7.09463 7.81424 8.26540 9.05727 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011655 B = 0.003367 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.864596 B = 8313.037315 C =10041.918995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.074 4.074 3 Si 1.112 2.888 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.346 4.346 8 H 0.053 0.947 9 N -0.612 5.612 10 C 0.155 3.845 11 C -0.125 4.125 12 C -0.076 4.076 13 C -0.097 4.097 14 C 0.132 3.868 15 N -0.628 5.628 16 C 0.614 3.386 17 O -0.554 6.554 18 C -0.046 4.046 19 C -0.108 4.108 20 C -0.164 4.164 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.071 4.071 24 C -0.130 4.130 25 C 0.042 3.958 26 O -0.196 6.196 27 C 0.124 3.876 28 C 0.165 3.835 29 H 0.256 0.744 30 H 0.044 0.956 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.182 0.818 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.141 0.859 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.027 0.973 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.323 -11.539 13.298 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.271 4.271 3 Si 0.938 3.062 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.476 4.476 8 H 0.070 0.930 9 N -0.336 5.336 10 C 0.030 3.970 11 C -0.164 4.164 12 C -0.114 4.114 13 C -0.099 4.099 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.404 3.596 17 O -0.435 6.435 18 C -0.095 4.095 19 C -0.129 4.129 20 C -0.165 4.165 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.089 4.089 24 C -0.148 4.148 25 C -0.006 4.006 26 O -0.098 6.098 27 C 0.003 3.997 28 C 0.039 3.961 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.200 0.800 39 H 0.173 0.827 40 H 0.185 0.815 41 H 0.188 0.812 42 H 0.159 0.841 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.045 0.955 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.061 -10.416 13.235 22.594 hybrid contribution -0.257 -1.537 -0.517 1.642 sum 14.804 -11.952 12.718 22.886 Atomic orbital electron populations 1.70836 1.07603 1.29571 1.50702 1.27011 0.96571 1.04569 0.98935 0.82886 0.74374 0.72470 0.76460 1.19817 1.22113 1.21657 1.20201 0.97186 0.89478 1.40748 0.92960 1.44289 1.46521 1.01736 1.41041 1.20689 0.89940 0.98088 0.88309 1.21836 1.00979 0.95612 0.97932 1.21063 0.97392 0.96292 0.96623 1.22445 0.94706 0.94908 0.97886 1.23208 0.95815 0.78604 1.01323 1.50078 1.40001 1.08896 1.37071 1.16449 0.78561 0.84752 0.79847 1.90831 1.67806 1.14447 1.70456 1.21830 1.03300 0.81626 1.02792 1.22984 0.94767 1.01005 0.94127 1.20165 1.02504 0.91715 1.02144 1.20765 0.93060 1.01540 0.92830 1.21289 1.01234 0.91325 1.01304 1.21516 0.94015 0.99616 0.93748 1.20406 0.99265 0.96121 0.99056 1.20349 0.91842 0.97254 0.91168 1.84077 1.50633 1.25945 1.49137 1.23400 0.87947 0.96904 0.91475 1.20853 0.98061 0.84643 0.92521 0.93410 0.93787 0.97500 0.90944 0.93219 0.90897 0.92047 0.89452 0.90572 0.80028 0.82726 0.81472 0.81188 0.84089 0.88636 0.87535 0.95495 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 12.39 21.65 0.27 -56.00 16 2 C -0.07 -4.10 4.69 84.86 0.40 -3.71 16 3 Si 1.11 49.99 29.99 68.60 2.06 52.05 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.35 -18.45 9.50 84.03 0.80 -17.65 16 8 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 9 N -0.61 -28.74 2.86 -700.46 -2.00 -30.74 16 10 C 0.16 7.01 4.62 86.19 0.40 7.41 16 11 C -0.12 -4.43 5.99 30.55 0.18 -4.24 16 12 C -0.08 -2.33 5.02 30.53 0.15 -2.18 16 13 C -0.10 -3.00 0.87 -52.04 -0.05 -3.05 16 14 C 0.13 4.15 6.86 86.30 0.59 4.75 16 15 N -0.63 -19.01 3.45 -847.72 -2.93 -21.94 16 16 C 0.61 19.93 8.03 86.54 0.69 20.62 16 17 O -0.55 -20.02 17.55 -4.22 -0.07 -20.10 16 18 C -0.05 -1.39 7.02 24.00 0.17 -1.22 16 19 C -0.11 -2.76 10.80 23.79 0.26 -2.50 16 20 C -0.16 -3.81 6.38 -20.23 -0.13 -3.94 16 21 C -0.06 -1.01 10.06 22.25 0.22 -0.78 16 22 C -0.13 -1.58 9.98 22.03 0.22 -1.36 16 23 C -0.07 -0.94 10.01 22.31 0.22 -0.72 16 24 C -0.13 -2.60 10.07 22.36 0.23 -2.38 16 25 C 0.04 1.09 7.41 23.07 0.17 1.26 16 26 O -0.20 -5.97 8.98 -12.97 -0.12 -6.09 16 27 C 0.12 3.31 7.97 86.30 0.69 4.00 16 28 C 0.17 6.20 5.71 86.20 0.49 6.70 16 29 H 0.26 15.48 6.77 -92.71 -0.63 14.85 16 30 H 0.04 2.30 6.23 -2.39 -0.01 2.28 16 31 H 0.01 0.32 7.94 -2.38 -0.02 0.30 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 1.85 7.37 -2.38 -0.02 1.83 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.80 8.02 -2.38 -0.02 1.78 16 36 H 0.09 2.78 7.97 -2.39 -0.02 2.76 16 37 H 0.08 2.55 6.73 -2.39 -0.02 2.53 16 38 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.10 2.36 8.09 -2.39 -0.02 2.34 16 44 H 0.11 2.51 8.09 -2.39 -0.02 2.49 16 45 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 Total: -1.00 -69.81 375.16 4.05 -65.76 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.13 Total: 16.04 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 5.71 Total: 1.01 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.66 Total: -108.68 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.19 Total: -26.19 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.06 Total: 52.05 kcal Total: -69.81 4.05 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982138669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.851 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds