Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99742 * 2 1 4 4 H 1.48500 * 109.47440 * 85.27446 * 3 2 1 5 5 H 1.48508 * 109.47007 * 205.27453 * 3 2 1 6 6 H 1.48503 * 109.47107 * 325.27022 * 3 2 1 7 7 C 1.38809 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99866 * 196.58997 * 7 2 1 9 9 N 1.36940 * 120.00000 * 16.58631 * 7 2 1 10 10 C 1.47158 * 120.70729 * 25.57696 * 9 7 2 11 11 C 1.54317 * 107.80299 * 132.67960 * 10 9 7 12 12 H 1.08998 * 112.53594 * 182.38083 * 11 10 9 13 13 C 1.54554 * 107.98455 * 306.73643 * 11 10 9 14 14 C 1.55858 * 104.99629 * 89.00819 * 13 11 10 15 15 C 1.54548 * 104.09715 * 0.02562 * 14 13 11 16 16 H 1.08998 * 112.18318 * 146.81260 * 15 14 13 17 17 C 1.47161 * 120.71114 * 205.84828 * 9 7 2 18 18 N 1.48301 * 107.10497 * 58.61536 * 11 10 9 19 19 C 1.34780 * 128.07729 * 106.56938 * 18 11 10 20 20 O 1.21282 * 119.99965 * 179.97438 * 19 18 11 21 21 C 1.50701 * 119.99820 * 0.02562 * 19 18 11 22 22 C 1.50705 * 109.47247 * 179.97438 * 21 19 18 23 23 C 1.33993 * 124.92271 * 89.99407 * 22 21 19 24 24 C 1.46781 * 106.18867 * 179.97438 * 23 22 21 25 25 C 1.39402 * 134.37741 * 180.02562 * 24 23 22 26 26 C 1.36741 * 119.71595 * 179.97438 * 25 24 23 27 27 C 1.38736 * 120.42127 * 0.02747 * 26 25 24 28 28 C 1.37852 * 120.68206 * 359.97438 * 27 26 25 29 29 C 1.38935 * 119.81753 * 359.97438 * 28 27 26 30 30 O 1.34450 * 124.92177 * 269.69318 * 22 21 19 31 31 H 0.96998 * 120.00313 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.74952 * 252.38635 * 10 9 7 33 33 H 1.09002 * 109.75310 * 13.11940 * 10 9 7 34 34 H 1.08996 * 110.36168 * 207.85764 * 13 11 10 35 35 H 1.08996 * 110.36097 * 330.06463 * 13 11 10 36 36 H 1.09000 * 110.89723 * 241.33646 * 14 13 11 37 37 H 1.08995 * 110.54994 * 118.52091 * 14 13 11 38 38 H 1.09010 * 109.74909 * 346.88517 * 17 9 7 39 39 H 1.08996 * 109.74769 * 107.56301 * 17 9 7 40 40 H 1.09000 * 109.47102 * 299.99414 * 21 19 18 41 41 H 1.09000 * 109.47361 * 59.99244 * 21 19 18 42 42 H 1.08004 * 126.90886 * 0.02562 * 23 22 21 43 43 H 1.07997 * 120.14387 * 0.02562 * 25 24 23 44 44 H 1.08005 * 119.78993 * 179.97438 * 26 25 24 45 45 H 1.08005 * 119.66327 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.08754 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3977 2.1042 1.3953 5 1 3.5941 1.4134 -0.5978 6 1 1.5010 2.6217 -0.7976 7 6 2.0103 -1.2021 0.0005 8 1 3.0566 -1.2214 0.2676 9 7 1.3683 -2.3635 -0.3375 10 6 0.1833 -2.3407 -1.2097 11 6 0.3730 -3.4244 -2.2918 12 1 -0.4474 -3.4466 -3.0091 13 6 1.7385 -3.1833 -2.9744 14 6 2.7629 -3.9943 -2.1248 15 6 1.9032 -4.6418 -1.0158 16 1 2.2821 -5.6200 -0.7197 17 6 1.8453 -3.6605 0.1685 18 7 0.5373 -4.7195 -1.5881 19 6 -0.3480 -5.7311 -1.4913 20 8 -0.0578 -6.7340 -0.8741 21 6 -1.6982 -5.6164 -2.1509 22 6 -2.4908 -6.8723 -1.8944 23 6 -3.3042 -7.0655 -0.8473 24 6 -3.8599 -8.4150 -1.0043 25 6 -4.7496 -9.1948 -0.2671 26 6 -5.0701 -10.4513 -0.7013 27 6 -4.5151 -10.9537 -1.8694 28 6 -3.6335 -10.1972 -2.6114 29 6 -3.2953 -8.9177 -2.1885 30 8 -2.4889 -7.9589 -2.6862 31 1 -0.4850 0.8400 -0.0004 32 1 -0.7101 -2.5542 -0.6228 33 1 0.0907 -1.3617 -1.6798 34 1 1.7205 -3.5531 -3.9996 35 1 1.9881 -2.1224 -2.9590 36 1 3.5132 -3.3356 -1.6874 37 1 3.2399 -4.7634 -2.7323 38 1 2.8397 -3.5445 0.5998 39 1 1.1570 -4.0361 0.9257 40 1 -2.2317 -4.7594 -1.7400 41 1 -1.5678 -5.4824 -3.2247 42 1 -3.5101 -6.3683 -0.0486 43 1 -5.1846 -8.8081 0.6426 44 1 -5.7590 -11.0567 -0.1309 45 1 -4.7765 -11.9479 -2.2008 46 1 -3.2068 -10.5980 -3.5191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017782812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 19.251918 kcal Electronic energy + Delta-G solvation = -29503.388276 eV Core-core repulsion = 25552.736669 eV Total energy + Delta-G solvation = -3950.651608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.49235 -41.57596 -39.41451 -38.74469 -35.92113 -34.44383 -33.37005 -32.57140 -32.08064 -31.76757 -31.35832 -28.61006 -27.85938 -25.29891 -24.83537 -24.00034 -23.08076 -22.52416 -21.94785 -21.38289 -19.78872 -18.98297 -18.35996 -17.99631 -17.60703 -17.19234 -16.81310 -16.64369 -16.30831 -16.08158 -15.87113 -15.30080 -15.07347 -14.86111 -14.66431 -14.51394 -14.30194 -14.08087 -13.79996 -13.56342 -13.52532 -13.28854 -13.21685 -13.07767 -12.84260 -12.68431 -12.64115 -12.27177 -12.09595 -12.05696 -11.87158 -11.72177 -11.55689 -11.22937 -11.15331 -10.92397 -10.56737 -9.83540 -9.60351 -9.14623 -8.65928 -7.85059 -5.28970 -0.09304 0.38897 1.20976 1.48506 1.52365 1.53356 1.60947 1.64449 2.06513 2.53130 2.76548 3.26938 3.30820 3.43701 3.55492 3.69500 3.87729 3.92003 4.02942 4.09269 4.09693 4.17193 4.18789 4.22327 4.34500 4.39915 4.43804 4.54478 4.60039 4.63288 4.73898 4.79555 4.87887 4.92546 5.03475 5.07770 5.16451 5.22016 5.29571 5.33021 5.38918 5.44763 5.49920 5.58474 5.62889 5.69391 5.74460 6.16986 6.35863 6.62811 7.07124 7.14803 7.82034 8.35828 9.20997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023301 B = 0.002542 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.393984 B =11013.150209 C =11527.619536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.964 3.036 4 H -0.295 1.295 5 H -0.268 1.268 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.598 5.598 10 C 0.179 3.821 11 C 0.105 3.895 12 H 0.124 0.876 13 C -0.107 4.107 14 C -0.103 4.103 15 C 0.118 3.882 16 H 0.089 0.911 17 C 0.138 3.862 18 N -0.605 5.605 19 C 0.530 3.470 20 O -0.588 6.588 21 C -0.056 4.056 22 C 0.046 3.954 23 C -0.208 4.208 24 C -0.154 4.154 25 C -0.086 4.086 26 C -0.134 4.134 27 C -0.089 4.089 28 C -0.120 4.120 29 C 0.023 3.977 30 O -0.206 6.206 31 H 0.250 0.750 32 H -0.007 1.007 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.068 0.932 39 H -0.008 1.008 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.162 0.838 45 H 0.172 0.828 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -16.261 -8.693 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.222 1.222 5 H -0.192 1.192 6 H -0.219 1.219 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.322 5.322 10 C 0.052 3.948 11 C 0.001 3.999 12 H 0.142 0.858 13 C -0.145 4.145 14 C -0.142 4.142 15 C 0.013 3.987 16 H 0.107 0.893 17 C 0.011 3.989 18 N -0.337 5.337 19 C 0.320 3.680 20 O -0.470 6.470 21 C -0.095 4.095 22 C -0.002 4.002 23 C -0.227 4.227 24 C -0.154 4.154 25 C -0.104 4.104 26 C -0.151 4.151 27 C -0.106 4.106 28 C -0.138 4.138 29 C -0.024 4.024 30 O -0.109 6.109 31 H 0.059 0.941 32 H 0.011 0.989 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.010 0.990 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.159 0.841 44 H 0.180 0.820 45 H 0.189 0.811 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.247 -16.740 -8.600 20.167 hybrid contribution 0.315 1.402 0.873 1.681 sum -6.932 -15.338 -7.727 18.521 Atomic orbital electron populations 1.70155 1.06449 1.25813 1.55796 1.25662 0.95974 1.01058 1.01441 0.85321 0.78421 0.80043 0.76979 1.22210 1.19224 1.21859 1.19462 0.92738 0.85291 1.40824 0.91278 1.44281 1.32431 1.01265 1.54202 1.21219 0.87245 0.96612 0.89687 1.23417 1.00138 0.81737 0.94624 0.85795 1.22538 0.92702 1.00896 0.98343 1.22531 0.97157 0.98769 0.95706 1.22750 0.82338 0.98381 0.95194 0.89273 1.21499 0.97725 0.86440 0.93199 1.49238 1.15483 1.16607 1.52338 1.20353 0.85980 0.81329 0.80305 1.90688 1.79321 1.31679 1.45261 1.20264 0.90904 0.92733 1.05591 1.21676 0.98727 0.88162 0.91635 1.22477 1.02457 0.97102 1.00703 1.20261 1.02166 0.95405 0.97614 1.20648 0.95808 0.94396 0.99530 1.21224 1.01254 0.95221 0.97426 1.21412 0.94565 1.00596 0.94040 1.20369 1.01369 0.89131 1.02974 1.20184 0.94736 0.92234 0.95253 1.83865 1.57220 1.22428 1.47354 0.94070 0.98865 0.90929 0.89562 0.91184 0.90743 0.90294 0.91317 0.99023 0.83697 0.84005 0.81837 0.84101 0.82042 0.81092 0.83446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.00 11.13 21.65 0.24 -51.76 16 2 C -0.05 -2.41 4.95 84.86 0.42 -1.99 16 3 Si 0.96 42.50 29.58 68.60 2.03 44.53 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.25 -12.91 9.64 84.03 0.81 -12.10 16 8 H 0.07 3.45 7.87 -2.91 -0.02 3.43 16 9 N -0.60 -27.83 2.28 -694.29 -1.58 -29.41 16 10 C 0.18 7.69 4.65 86.70 0.40 8.10 16 11 C 0.10 3.30 3.99 45.62 0.18 3.49 16 12 H 0.12 3.00 7.42 -2.39 -0.02 2.99 16 13 C -0.11 -3.09 6.22 32.11 0.20 -2.89 16 14 C -0.10 -3.07 6.31 32.11 0.20 -2.87 16 15 C 0.12 4.12 4.08 45.48 0.19 4.30 16 16 H 0.09 3.12 7.92 -2.39 -0.02 3.10 16 17 C 0.14 5.75 6.00 86.56 0.52 6.27 16 18 N -0.60 -20.53 2.74 -755.66 -2.07 -22.60 16 19 C 0.53 18.50 7.92 87.66 0.69 19.19 16 20 O -0.59 -25.31 16.34 -3.04 -0.05 -25.36 16 21 C -0.06 -1.48 5.20 29.10 0.15 -1.33 16 22 C 0.05 1.40 5.73 24.72 0.14 1.54 16 23 C -0.21 -6.29 11.01 23.54 0.26 -6.03 16 24 C -0.15 -4.42 6.40 -20.21 -0.13 -4.54 16 25 C -0.09 -1.89 10.05 22.20 0.22 -1.67 16 26 C -0.13 -2.19 9.98 22.04 0.22 -1.97 16 27 C -0.09 -1.40 10.01 22.30 0.22 -1.17 16 28 C -0.12 -2.58 10.07 22.35 0.23 -2.35 16 29 C 0.02 0.66 7.42 22.99 0.17 0.83 16 30 O -0.21 -6.62 10.58 -8.97 -0.09 -6.71 16 31 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.07 3.47 6.27 -2.39 -0.01 3.45 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.32 7.85 -2.39 -0.02 2.30 16 36 H 0.07 2.37 7.84 -2.39 -0.02 2.35 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.73 7.96 -2.38 -0.02 2.71 16 39 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.15 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.14 2.84 8.04 -2.39 -0.02 2.82 16 42 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -71.72 374.05 4.55 -67.17 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.99 Total: 19.32 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.10 Total: 4.81 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.42 Total: -103.77 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.14 Total: -32.07 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.72 4.55 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017782812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.421 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds