Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99900 * 2 1 4 4 H 1.48509 * 109.46830 * 269.99634 * 3 2 1 5 5 H 1.48491 * 109.47440 * 29.99528 * 3 2 1 6 6 H 1.48501 * 109.46960 * 150.00255 * 3 2 1 7 7 C 1.38814 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99916 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99796 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.46520 * 36.18643 * 10 9 7 12 12 C 1.56001 * 110.52642 * 273.55063 * 10 9 7 13 13 C 1.56338 * 105.76500 * 234.41224 * 12 10 9 14 14 C 1.51556 * 101.81922 * 334.56056 * 13 12 10 15 15 H 1.09001 * 111.11461 * 287.81170 * 14 13 12 16 16 C 1.51514 * 123.35630 * 152.01951 * 14 13 12 17 17 N 1.49626 * 102.49347 * 207.63352 * 16 14 13 18 18 C 1.34776 * 126.07349 * 205.39445 * 17 16 14 19 19 O 1.21660 * 120.00436 * 180.02562 * 18 17 16 20 20 C 1.46983 * 120.00061 * 0.02562 * 18 17 16 21 21 C 1.35804 * 125.13282 * 179.72619 * 20 18 17 22 22 C 1.46244 * 106.07847 * 179.85985 * 21 20 18 23 23 C 1.39711 * 134.19065 * 180.13778 * 22 21 20 24 24 C 1.36609 * 119.71026 * 180.28137 * 23 22 21 25 25 C 1.38836 * 120.44719 * 359.97438 * 24 23 22 26 26 C 1.37794 * 120.74508 * 0.02562 * 25 24 23 27 27 C 1.39036 * 119.85215 * 359.96892 * 26 25 24 28 28 O 1.34709 * 133.24128 * 180.02562 * 27 26 25 29 29 C 1.49283 * 107.85830 * 25.65372 * 17 16 14 30 30 C 1.49722 * 104.67493 * 6.38476 * 29 17 16 31 31 H 1.09007 * 107.85968 * 78.31269 * 30 29 17 32 32 H 0.96998 * 120.00191 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00136 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.19105 * 115.33616 * 12 10 9 35 35 H 1.09004 * 110.19047 * 353.48248 * 12 10 9 36 36 H 1.09001 * 110.95616 * 216.43088 * 13 12 10 37 37 H 1.08998 * 110.96155 * 92.69140 * 13 12 10 38 38 H 1.09002 * 110.80499 * 89.38333 * 16 14 13 39 39 H 1.08998 * 110.97356 * 325.96146 * 16 14 13 40 40 H 1.08004 * 126.96120 * 359.97438 * 21 20 18 41 41 H 1.08002 * 120.14028 * 0.29797 * 23 22 21 42 42 H 1.08006 * 119.77689 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.63321 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.07948 * 180.02562 * 26 25 24 45 45 H 1.09000 * 110.40045 * 125.17783 * 29 17 16 46 46 H 1.09000 * 110.40310 * 247.59188 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1122 -2.4708 0.0022 11 1 3.5892 -3.2135 -0.6005 12 6 4.3068 -2.9888 1.4608 13 6 5.8439 -3.2199 1.6279 14 6 6.2793 -3.4594 0.1961 15 1 5.9435 -4.4339 -0.1586 16 6 7.6691 -3.1408 -0.3164 17 7 7.4252 -2.8727 -1.7681 18 6 8.3245 -3.0098 -2.7625 19 8 8.0059 -2.7595 -3.9097 20 6 9.6903 -3.4617 -2.4611 21 6 10.6748 -3.6403 -3.3792 22 6 11.8492 -4.0885 -2.6317 23 6 13.1559 -4.4333 -2.9861 24 6 14.0375 -4.8285 -2.0203 25 6 13.6435 -4.8889 -0.6903 26 6 12.3595 -4.5530 -0.3200 27 6 11.4444 -4.1478 -1.2853 28 8 10.1535 -3.7667 -1.2308 29 6 6.0105 -2.4201 -1.9186 30 6 5.5049 -2.2828 -0.5161 31 1 5.8873 -1.3449 -0.1132 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3621 0.0007 34 1 3.7679 -3.9256 1.6024 35 1 3.9588 -2.2422 2.1747 36 1 6.0415 -4.0950 2.2471 37 1 6.3288 -2.3350 2.0400 38 1 8.3346 -3.9943 -0.1869 39 1 8.0742 -2.2577 0.1777 40 1 10.6053 -3.4815 -4.4452 41 1 13.4677 -4.3874 -4.0191 42 1 15.0480 -5.0949 -2.2929 43 1 14.3514 -5.2027 0.0626 44 1 12.0646 -4.6035 0.7177 45 1 5.9715 -1.4595 -2.4321 46 1 5.4288 -3.1656 -2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = 36.096534 kcal Electronic energy + Delta-G solvation = -28867.436013 eV Core-core repulsion = 24917.514843 eV Total energy + Delta-G solvation = -3949.921170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85305 -40.61528 -38.84186 -38.17163 -35.58618 -33.51899 -33.15838 -31.21802 -30.97778 -30.51726 -29.30687 -28.77225 -25.89537 -24.68383 -23.31946 -22.84767 -22.47085 -21.74852 -20.39088 -20.04329 -19.30948 -18.01772 -17.77517 -17.45135 -16.85067 -16.61777 -16.14999 -15.58212 -15.14440 -14.86788 -14.69169 -14.40988 -14.34110 -13.87165 -13.67680 -13.62082 -13.39529 -12.96973 -12.76564 -12.68387 -12.51382 -12.38705 -12.06400 -11.92873 -11.62474 -11.40751 -11.20799 -10.95625 -10.85323 -10.59924 -10.56497 -10.40444 -10.32068 -10.09843 -9.84319 -9.59483 -9.09238 -8.96241 -8.93399 -8.58573 -7.31130 -5.79474 -3.15795 0.20817 0.92334 1.50483 2.08290 2.67407 2.92988 3.27469 3.35582 3.38814 3.44297 3.84682 4.08012 4.19639 4.48707 4.56698 4.60153 4.67144 4.73472 4.81182 4.89205 4.95961 5.13996 5.17973 5.20817 5.36323 5.40751 5.43519 5.48431 5.59197 5.64623 5.65976 5.77822 5.80623 5.81536 5.91637 5.93613 5.97307 5.98722 5.99799 6.14850 6.15367 6.22889 6.31992 6.49169 6.65796 6.67958 6.91073 7.20772 7.78615 7.96297 8.39537 9.17074 9.89623 10.08587 11.38654 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022224 B = 0.002379 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.603874 B =11768.251505 C =12344.374344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.205 3.795 11 H 0.062 0.938 12 C -0.141 4.141 13 C -0.100 4.100 14 C -0.123 4.123 15 H 0.090 0.910 16 C 0.116 3.884 17 N -0.613 5.613 18 C 0.609 3.391 19 O -0.517 6.517 20 C -0.014 4.014 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.061 4.061 24 C -0.140 4.140 25 C -0.085 4.085 26 C -0.110 4.110 27 C 0.066 3.934 28 O -0.179 6.179 29 C 0.134 3.866 30 C -0.127 4.127 31 H 0.073 0.927 32 H 0.260 0.740 33 H 0.361 0.639 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.170 0.830 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.311 -11.570 -0.281 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.109 0.891 9 N -0.387 5.387 10 C 0.095 3.905 11 H 0.080 0.920 12 C -0.181 4.181 13 C -0.139 4.139 14 C -0.143 4.143 15 H 0.108 0.892 16 C -0.005 4.005 17 N -0.346 5.346 18 C 0.396 3.604 19 O -0.395 6.395 20 C -0.064 4.064 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.079 4.079 24 C -0.158 4.158 25 C -0.103 4.103 26 C -0.128 4.128 27 C 0.017 3.983 28 O -0.081 6.081 29 C 0.014 3.986 30 C -0.147 4.147 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.194 0.806 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.188 0.812 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 28.733 -11.457 -0.730 30.942 hybrid contribution 0.655 1.298 -0.026 1.454 sum 29.388 -10.159 -0.756 31.104 Atomic orbital electron populations 1.69698 1.05096 1.25849 1.57339 1.24677 0.95222 0.97191 1.01950 0.86577 0.79163 0.85086 0.77834 1.21044 1.21763 1.20377 1.19060 0.80470 0.94722 1.43162 0.89099 1.42851 1.04100 1.01702 1.90004 1.19888 0.88014 0.89576 0.93069 0.91963 1.23723 0.93105 1.01365 0.99942 1.21868 0.97335 1.01101 0.93577 1.22573 0.94050 0.99755 0.97890 0.89201 1.21936 0.97456 1.01537 0.79565 1.49754 1.12338 1.64919 1.07544 1.16282 0.81143 0.78549 0.84409 1.90908 1.77541 1.51656 1.19381 1.21982 0.95477 1.06306 0.82611 1.22727 0.89903 1.00758 1.00455 1.19943 0.95501 1.06007 0.92956 1.20388 0.90618 0.96658 1.00210 1.20811 1.00111 1.02042 0.92820 1.21021 0.94643 0.98020 0.96662 1.20023 0.91527 1.03035 0.98226 1.19839 0.83149 0.99922 0.95355 1.84172 1.23811 1.69870 1.30199 1.21064 0.79346 1.00800 0.97390 1.22114 0.99057 0.99332 0.94190 0.90838 0.93034 0.80572 0.92098 0.90594 0.91800 0.91547 0.89591 0.90624 0.81221 0.85159 0.85107 0.84548 0.84667 0.90200 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.86 27.74 -169.99 -4.71 17.15 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.24 -6.67 10.46 -15.06 -0.16 -6.82 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.76 4.93 -53.41 -0.26 -17.02 16 10 C 0.21 3.64 3.39 -67.92 -0.23 3.41 16 11 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 12 C -0.14 -2.18 6.74 -23.33 -0.16 -2.33 16 13 C -0.10 -1.19 6.65 -25.67 -0.17 -1.36 16 14 C -0.12 -1.46 3.11 -89.45 -0.28 -1.74 16 15 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.12 1.32 5.94 -3.05 -0.02 1.30 16 17 N -0.61 -8.36 3.43 -173.00 -0.59 -8.95 16 18 C 0.61 8.91 7.86 -12.72 -0.10 8.81 16 19 O -0.52 -8.96 17.19 5.22 0.09 -8.87 16 20 C -0.01 -0.18 6.91 -36.91 -0.25 -0.43 16 21 C -0.12 -1.32 10.80 -37.24 -0.40 -1.72 16 22 C -0.14 -1.45 6.38 -105.19 -0.67 -2.12 16 23 C -0.06 -0.46 10.06 -39.62 -0.40 -0.86 16 24 C -0.14 -0.85 9.98 -39.95 -0.40 -1.25 16 25 C -0.09 -0.51 10.01 -39.52 -0.40 -0.91 16 26 C -0.11 -0.85 10.07 -39.45 -0.40 -1.24 16 27 C 0.07 0.68 7.41 -38.35 -0.28 0.40 16 28 O -0.18 -2.07 7.72 2.78 0.02 -2.05 16 29 C 0.13 1.97 6.82 -4.12 -0.03 1.94 16 30 C -0.13 -1.87 2.25 -91.18 -0.21 -2.07 16 31 H 0.07 1.12 7.74 -51.93 -0.40 0.72 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.36 8.08 5.50 -40.82 -0.22 7.86 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.90 6.24 -51.93 -0.32 0.58 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 43 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 375.27 15.07 5.66 5.66 Total: -1.00 -32.74 375.27 -10.12 -42.86 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.45 Total: 6.34 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -4.64 Total: -6.95 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.08 Total: -54.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.11 Total: -10.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.74 -10.12 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.957 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds