Wall clock time and date at job start Sat Apr 11 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48506 * 109.46484 * 269.99511 * 3 2 1 5 5 H 1.48504 * 109.47074 * 29.99332 * 3 2 1 6 6 H 1.48494 * 109.47166 * 149.99811 * 3 2 1 7 7 C 1.38807 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00318 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.44011 * 32.43767 * 10 9 7 12 12 C 1.55946 * 110.49469 * 269.73692 * 10 9 7 13 13 C 1.56402 * 105.78566 * 248.87244 * 12 10 9 14 14 C 1.51000 * 101.59654 * 25.01734 * 13 12 10 15 15 H 1.08998 * 109.73534 * 69.24870 * 14 13 12 16 16 C 1.50354 * 125.54172 * 204.00116 * 14 13 12 17 17 N 1.49217 * 104.86390 * 144.30635 * 16 14 13 18 18 C 1.34774 * 126.06082 * 172.90854 * 17 16 14 19 19 O 1.21649 * 119.99938 * 175.72737 * 18 17 16 20 20 C 1.47078 * 119.99894 * 355.72855 * 18 17 16 21 21 C 1.36053 * 127.14110 * 6.27562 * 20 18 17 22 22 O 1.33808 * 109.84959 * 179.86474 * 21 20 18 23 23 C 1.34916 * 111.34963 * 0.42292 * 22 21 20 24 24 C 1.38963 * 133.11732 * 179.71998 * 23 22 21 25 25 C 1.37841 * 119.97699 * 180.02562 * 24 23 22 26 26 C 1.38686 * 120.64886 * 0.02562 * 25 24 23 27 27 C 1.37840 * 120.20755 * 359.97290 * 26 25 24 28 28 C 1.39112 * 119.62339 * 0.04401 * 27 26 25 29 29 C 1.49701 * 107.87710 * 352.92903 * 17 16 14 30 30 C 1.50288 * 110.49465 * 155.00043 * 10 9 7 31 31 H 1.09007 * 109.48378 * 198.94425 * 30 10 9 32 32 H 0.97000 * 120.00016 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99853 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18194 * 7.94775 * 12 10 9 35 35 H 1.08992 * 110.18692 * 129.79242 * 12 10 9 36 36 H 1.08996 * 111.00145 * 266.93206 * 13 12 10 37 37 H 1.09007 * 110.99914 * 143.09277 * 13 12 10 38 38 H 1.09005 * 110.35903 * 263.14918 * 16 14 13 39 39 H 1.08998 * 110.36610 * 25.45874 * 16 14 13 40 40 H 1.07996 * 125.07344 * 0.02562 * 21 20 18 41 41 H 1.08004 * 120.01136 * 0.02562 * 24 23 22 42 42 H 1.07993 * 119.67549 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.89602 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.18994 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.84295 * 216.66701 * 29 17 16 46 46 H 1.09002 * 111.01711 * 93.14282 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5562 -3.2314 -0.5472 12 6 4.3904 -2.9407 1.4618 13 6 5.9355 -2.8073 1.6646 14 6 6.2838 -1.7430 0.6517 15 1 5.8739 -0.7843 0.9693 16 6 7.6351 -1.5432 0.0235 17 7 7.3468 -1.1127 -1.3759 18 6 8.2538 -0.6894 -2.2785 19 8 7.9070 -0.4376 -3.4170 20 6 9.6627 -0.5321 -1.8870 21 6 10.2295 -0.8809 -0.7004 22 8 11.5347 -0.5868 -0.7164 23 6 11.8980 -0.0282 -1.8895 24 6 13.1083 0.4448 -2.3818 25 6 13.1747 0.9765 -3.6518 26 6 12.0421 1.0462 -4.4491 27 6 10.8327 0.5821 -3.9781 28 6 10.7543 0.0439 -2.6977 29 6 5.8715 -1.2338 -1.5992 30 6 5.4804 -2.2884 -0.5933 31 1 5.8775 -3.2575 -0.8958 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3621 0.0007 34 1 3.8617 -2.3020 2.1694 35 1 4.0826 -3.9786 1.5881 36 1 6.4418 -3.7451 1.4359 37 1 6.1695 -2.4754 2.6762 38 1 8.1883 -0.7672 0.5526 39 1 8.1960 -2.4778 0.0247 40 1 9.7048 -1.3307 0.1295 41 1 13.9967 0.3959 -1.7695 42 1 14.1180 1.3422 -4.0297 43 1 12.1081 1.4648 -5.4426 44 1 9.9510 0.6362 -4.5994 45 1 5.6592 -1.5685 -2.6146 46 1 5.3657 -0.2913 -1.3896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026434109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:35 Heat of formation + Delta-G solvation = 41.761842 kcal Electronic energy + Delta-G solvation = -29321.910410 eV Core-core repulsion = 25372.234906 eV Total energy + Delta-G solvation = -3949.675504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.89472 -40.68440 -38.59700 -38.16509 -35.47536 -33.50912 -33.16246 -31.21331 -30.76199 -30.39914 -29.00337 -28.90616 -25.87495 -24.60148 -23.54402 -22.95682 -22.55690 -22.06571 -20.23438 -19.57591 -19.08396 -18.18144 -17.68656 -17.37568 -16.62614 -16.26260 -16.02245 -15.88021 -15.27425 -14.85166 -14.67297 -14.43283 -14.14535 -14.09529 -13.93964 -13.73477 -13.10268 -12.91422 -12.71151 -12.59979 -12.50242 -12.25088 -12.06276 -11.98117 -11.47395 -11.28393 -11.17879 -10.95770 -10.79785 -10.53990 -10.43576 -10.42047 -10.18196 -10.06348 -9.76901 -9.60430 -8.99771 -8.98534 -8.77629 -8.54890 -7.32963 -5.81181 -3.17387 0.46390 0.99318 1.49803 2.29250 2.71258 3.08581 3.32787 3.36806 3.43215 3.48816 3.92648 4.06057 4.20310 4.51402 4.54743 4.63414 4.67223 4.70411 4.94634 4.97730 5.03050 5.07132 5.10771 5.13429 5.26425 5.40004 5.44254 5.48112 5.50626 5.58194 5.73155 5.79273 5.83684 5.88735 5.93174 6.02748 6.04569 6.10705 6.16063 6.19220 6.25072 6.27014 6.32583 6.42964 6.64190 6.73793 6.88034 7.38861 7.94768 8.08011 8.37902 9.15272 9.87834 10.06418 11.37053 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002845 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.753288 B = 9838.085951 C =10760.366978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.199 3.801 11 H 0.067 0.933 12 C -0.144 4.144 13 C -0.096 4.096 14 C -0.131 4.131 15 H 0.088 0.912 16 C 0.107 3.893 17 N -0.621 5.621 18 C 0.601 3.399 19 O -0.534 6.534 20 C -0.219 4.219 21 C 0.051 3.949 22 O -0.184 6.184 23 C 0.045 3.955 24 C -0.107 4.107 25 C -0.094 4.094 26 C -0.134 4.134 27 C -0.059 4.059 28 C -0.092 4.092 29 C 0.132 3.868 30 C -0.123 4.123 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.225 0.775 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.085 0.915 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.427 -3.083 -0.728 27.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.089 3.911 11 H 0.085 0.915 12 C -0.185 4.185 13 C -0.134 4.134 14 C -0.150 4.150 15 H 0.106 0.894 16 C -0.015 4.015 17 N -0.356 5.356 18 C 0.391 3.609 19 O -0.412 6.412 20 C -0.224 4.224 21 C -0.017 4.017 22 O -0.084 6.084 23 C -0.002 4.002 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.077 4.077 28 C -0.094 4.094 29 C 0.012 3.988 30 C -0.143 4.143 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.194 0.806 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.103 0.897 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 27.224 -3.002 -1.225 27.417 hybrid contribution 0.371 1.282 0.150 1.343 sum 27.595 -1.721 -1.074 27.669 Atomic orbital electron populations 1.69691 1.05076 1.25840 1.57320 1.24655 0.95177 0.97073 1.01950 0.86652 0.79133 0.85337 0.77960 1.20915 1.21666 1.20526 1.19074 0.80483 0.94710 1.43174 0.89032 1.42803 1.04014 1.01765 1.89937 1.20126 0.88584 0.89820 0.92606 0.91482 1.23818 0.93291 1.01149 1.00242 1.21741 0.97546 0.96725 0.97416 1.22252 0.94027 1.01401 0.97295 0.89409 1.21601 0.98206 0.99427 0.82281 1.49684 1.08249 1.65313 1.12362 1.16683 0.82993 0.77110 0.84163 1.90797 1.80357 1.51247 1.18792 1.20981 0.94651 1.10969 0.95754 1.25336 0.80679 0.96878 0.98807 1.83877 1.25253 1.64601 1.34637 1.19623 0.95812 1.00334 0.84410 1.19930 0.94094 1.01970 0.96577 1.20957 0.99072 0.98446 0.92699 1.21135 0.92178 1.01347 1.00542 1.20756 0.98653 0.94978 0.93358 1.19428 0.91306 1.02724 0.95929 1.21452 0.77526 0.99621 1.00221 1.22546 0.98882 0.98403 0.94477 0.89952 0.93012 0.80618 0.90388 0.92255 0.91709 0.91796 0.90744 0.90684 0.75878 0.84874 0.84608 0.85005 0.84391 0.89695 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.24 -6.56 10.44 -15.06 -0.16 -6.72 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.21 4.61 -53.21 -0.25 -16.46 16 10 C 0.20 3.41 3.46 -67.71 -0.23 3.18 16 11 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 12 C -0.14 -2.11 6.73 -23.33 -0.16 -2.27 16 13 C -0.10 -1.06 6.72 -25.91 -0.17 -1.23 16 14 C -0.13 -1.57 2.73 -90.26 -0.25 -1.82 16 15 H 0.09 1.25 7.64 -51.93 -0.40 0.85 16 16 C 0.11 1.07 4.86 -3.85 -0.02 1.05 16 17 N -0.62 -8.57 3.43 -172.95 -0.59 -9.16 16 18 C 0.60 9.31 7.86 -12.68 -0.10 9.21 16 19 O -0.53 -10.11 16.64 5.23 0.09 -10.02 16 20 C -0.22 -2.87 6.27 -103.25 -0.65 -3.52 16 21 C 0.05 0.50 10.62 29.95 0.32 0.82 16 22 O -0.18 -1.96 10.53 5.31 0.06 -1.91 16 23 C 0.04 0.50 7.39 -38.56 -0.28 0.22 16 24 C -0.11 -0.94 10.06 -39.46 -0.40 -1.34 16 25 C -0.09 -0.72 10.01 -39.56 -0.40 -1.12 16 26 C -0.13 -1.21 10.04 -39.56 -0.40 -1.60 16 27 C -0.06 -0.72 9.89 -39.40 -0.39 -1.11 16 28 C -0.09 -1.21 6.29 -104.98 -0.66 -1.87 16 29 C 0.13 2.07 6.54 -3.31 -0.02 2.05 16 30 C -0.12 -1.73 2.59 -90.35 -0.23 -1.97 16 31 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.36 7.87 4.05 -40.82 -0.17 7.70 16 34 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.07 0.61 6.48 -51.93 -0.34 0.28 16 39 H 0.08 0.58 7.55 -51.93 -0.39 0.19 16 40 H 0.23 1.43 4.44 -52.49 -0.23 1.20 16 41 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.14 1.77 7.56 -52.49 -0.40 1.37 16 45 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 46 H 0.08 1.36 6.96 -51.93 -0.36 1.00 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -33.78 367.56 -9.47 -43.25 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.09 Total: 7.55 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -4.29 Total: -7.91 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.06 Total: -53.59 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.14 Total: -11.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.78 -9.47 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026434109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.011 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds