Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99962 * 2 1 4 4 H 1.48506 * 109.46484 * 269.99511 * 3 2 1 5 5 H 1.48504 * 109.47074 * 29.99332 * 3 2 1 6 6 H 1.48494 * 109.47166 * 149.99811 * 3 2 1 7 7 C 1.38807 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00419 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99963 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00318 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.44011 * 32.43767 * 10 9 7 12 12 C 1.55946 * 110.49469 * 269.73692 * 10 9 7 13 13 C 1.56402 * 105.78566 * 248.87244 * 12 10 9 14 14 C 1.51000 * 101.59654 * 25.01734 * 13 12 10 15 15 H 1.08998 * 109.73534 * 69.24870 * 14 13 12 16 16 C 1.50354 * 125.54172 * 204.00116 * 14 13 12 17 17 N 1.49217 * 104.86390 * 144.30635 * 16 14 13 18 18 C 1.34774 * 126.06082 * 172.90854 * 17 16 14 19 19 O 1.21649 * 119.99938 * 175.72737 * 18 17 16 20 20 C 1.47078 * 119.99894 * 355.72855 * 18 17 16 21 21 C 1.36053 * 127.14110 * 6.27562 * 20 18 17 22 22 O 1.33808 * 109.84959 * 179.86474 * 21 20 18 23 23 C 1.34916 * 111.34963 * 0.42292 * 22 21 20 24 24 C 1.38963 * 133.11732 * 179.71998 * 23 22 21 25 25 C 1.37841 * 119.97699 * 180.02562 * 24 23 22 26 26 C 1.38686 * 120.64886 * 0.02562 * 25 24 23 27 27 C 1.37840 * 120.20755 * 359.97290 * 26 25 24 28 28 C 1.39112 * 119.62339 * 0.04401 * 27 26 25 29 29 C 1.49701 * 107.87710 * 352.92903 * 17 16 14 30 30 C 1.50288 * 110.49465 * 155.00043 * 10 9 7 31 31 H 1.09007 * 109.48378 * 198.94425 * 30 10 9 32 32 H 0.97000 * 120.00016 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99853 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18194 * 7.94775 * 12 10 9 35 35 H 1.08992 * 110.18692 * 129.79242 * 12 10 9 36 36 H 1.08996 * 111.00145 * 266.93206 * 13 12 10 37 37 H 1.09007 * 110.99914 * 143.09277 * 13 12 10 38 38 H 1.09005 * 110.35903 * 263.14918 * 16 14 13 39 39 H 1.08998 * 110.36610 * 25.45874 * 16 14 13 40 40 H 1.07996 * 125.07344 * 0.02562 * 21 20 18 41 41 H 1.08004 * 120.01136 * 0.02562 * 24 23 22 42 42 H 1.07993 * 119.67549 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.89602 * 180.02562 * 26 25 24 44 44 H 1.07994 * 120.18994 * 180.02562 * 27 26 25 45 45 H 1.09001 * 110.84295 * 216.66701 * 29 17 16 46 46 H 1.09002 * 111.01711 * 93.14282 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5562 -3.2314 -0.5472 12 6 4.3904 -2.9407 1.4618 13 6 5.9355 -2.8073 1.6646 14 6 6.2838 -1.7430 0.6517 15 1 5.8739 -0.7843 0.9693 16 6 7.6351 -1.5432 0.0235 17 7 7.3468 -1.1127 -1.3759 18 6 8.2538 -0.6894 -2.2785 19 8 7.9070 -0.4376 -3.4170 20 6 9.6627 -0.5321 -1.8870 21 6 10.2295 -0.8809 -0.7004 22 8 11.5347 -0.5868 -0.7164 23 6 11.8980 -0.0282 -1.8895 24 6 13.1083 0.4448 -2.3818 25 6 13.1747 0.9765 -3.6518 26 6 12.0421 1.0462 -4.4491 27 6 10.8327 0.5821 -3.9781 28 6 10.7543 0.0439 -2.6977 29 6 5.8715 -1.2338 -1.5992 30 6 5.4804 -2.2884 -0.5933 31 1 5.8775 -3.2575 -0.8958 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3621 0.0007 34 1 3.8617 -2.3020 2.1694 35 1 4.0826 -3.9786 1.5881 36 1 6.4418 -3.7451 1.4359 37 1 6.1695 -2.4754 2.6762 38 1 8.1883 -0.7672 0.5526 39 1 8.1960 -2.4778 0.0247 40 1 9.7048 -1.3307 0.1295 41 1 13.9967 0.3959 -1.7695 42 1 14.1180 1.3422 -4.0297 43 1 12.1081 1.4648 -5.4426 44 1 9.9510 0.6362 -4.5994 45 1 5.6592 -1.5685 -2.6146 46 1 5.3657 -0.2913 -1.3896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026434109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = 20.181850 kcal Electronic energy + Delta-G solvation = -29322.846189 eV Core-core repulsion = 25372.234906 eV Total energy + Delta-G solvation = -3950.611283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68418 -41.80267 -39.78927 -38.88215 -36.86176 -35.15491 -34.05209 -33.02712 -31.56739 -31.32450 -30.27054 -29.85933 -27.19245 -25.60437 -24.81740 -24.34490 -23.31011 -23.07846 -21.20011 -20.64500 -20.45800 -19.77708 -18.77243 -18.30148 -17.48169 -17.23280 -17.00858 -16.84918 -16.67041 -16.18600 -15.82752 -15.62182 -15.47269 -15.05738 -14.96991 -14.75582 -14.57572 -14.13000 -13.83165 -13.80650 -13.51242 -13.34815 -13.31576 -13.00672 -12.89027 -12.73220 -12.31705 -12.24298 -12.02282 -11.96386 -11.89551 -11.65111 -11.43618 -11.28719 -11.22135 -10.99953 -10.91589 -9.90645 -9.71813 -9.33373 -9.29107 -8.03464 -5.34670 -0.30175 0.24475 0.64951 1.30722 1.35340 1.40544 1.47873 1.72034 2.08704 2.44412 2.70433 2.88005 3.28411 3.28783 3.35564 3.57959 3.74130 3.76156 3.81449 3.96651 4.09308 4.12096 4.20725 4.28431 4.33409 4.37562 4.38881 4.49063 4.52312 4.57892 4.68550 4.73422 4.79665 4.86305 4.96080 5.00272 5.07319 5.12366 5.17672 5.22840 5.34377 5.34969 5.43717 5.46327 5.53501 5.62940 5.80728 5.99837 6.21996 6.32868 6.96017 7.07848 7.85468 8.01874 9.18436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.002845 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.753288 B = 9838.085951 C =10760.366978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.941 3.059 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.253 1.253 7 C -0.219 4.219 8 H 0.062 0.938 9 N -0.746 5.746 10 C 0.186 3.814 11 H 0.051 0.949 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.114 4.114 15 H 0.064 0.936 16 C 0.103 3.897 17 N -0.618 5.618 18 C 0.596 3.404 19 O -0.587 6.587 20 C -0.260 4.260 21 C 0.089 3.911 22 O -0.180 6.180 23 C 0.027 3.973 24 C -0.101 4.101 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.097 4.097 28 C -0.122 4.122 29 C 0.131 3.869 30 C -0.123 4.123 31 H 0.107 0.893 32 H 0.256 0.744 33 H 0.362 0.638 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.264 0.736 41 H 0.165 0.835 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.700 -3.694 1.320 32.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.253 4.253 3 Si 0.770 3.230 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.178 1.178 7 C -0.350 4.350 8 H 0.080 0.920 9 N -0.389 5.389 10 C 0.077 3.923 11 H 0.069 0.931 12 C -0.181 4.181 13 C -0.117 4.117 14 C -0.133 4.133 15 H 0.082 0.918 16 C -0.017 4.017 17 N -0.352 5.352 18 C 0.388 3.612 19 O -0.469 6.469 20 C -0.265 4.265 21 C 0.021 3.979 22 O -0.079 6.079 23 C -0.019 4.019 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.144 4.144 27 C -0.115 4.115 28 C -0.124 4.124 29 C 0.009 3.991 30 C -0.143 4.143 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.279 0.721 41 H 0.182 0.818 42 H 0.193 0.807 43 H 0.171 0.829 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 32.578 -3.660 0.871 32.795 hybrid contribution -1.242 1.373 -0.550 1.932 sum 31.336 -2.287 0.320 31.421 Atomic orbital electron populations 1.69857 1.06915 1.26352 1.60333 1.25362 0.95927 1.00620 1.03414 0.85615 0.78847 0.80900 0.77637 1.21548 1.22182 1.17752 1.19063 0.82689 0.93314 1.39937 0.91985 1.42806 1.02295 1.03823 1.89997 1.20438 0.89595 0.87373 0.94883 0.93072 1.23634 0.96587 1.01072 0.96772 1.21686 0.94038 0.97827 0.98127 1.22207 0.94489 1.00538 0.96104 0.91758 1.21933 0.97688 1.02285 0.79764 1.49679 1.06889 1.64788 1.13837 1.17104 0.84155 0.76276 0.83647 1.90758 1.81374 1.53691 1.21104 1.20843 0.93429 1.14383 0.97807 1.25896 0.80176 0.93790 0.98042 1.83896 1.25371 1.64268 1.34320 1.19944 0.96157 1.01396 0.84362 1.20438 0.94147 1.00269 0.97083 1.21431 0.99919 0.97190 0.92049 1.21469 0.91516 0.99787 1.01626 1.20767 0.99257 0.97752 0.93707 1.19730 0.92342 1.03628 0.96672 1.21253 0.79249 0.98879 0.99719 1.22370 0.97326 0.99169 0.95389 0.87481 0.93515 0.80441 0.93147 0.90933 0.88397 0.89763 0.87915 0.86634 0.72128 0.81791 0.80674 0.82874 0.87027 0.91752 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.31 13.97 21.65 0.30 -63.01 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.94 46.40 27.74 68.60 1.90 48.31 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 6 H -0.25 -11.18 6.52 99.48 0.65 -10.53 16 7 C -0.22 -12.17 10.44 84.03 0.88 -11.29 16 8 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 9 N -0.75 -33.09 4.61 -322.26 -1.49 -34.58 16 10 C 0.19 6.30 3.46 45.14 0.16 6.45 16 11 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 12 C -0.14 -3.83 6.73 32.80 0.22 -3.61 16 13 C -0.08 -1.36 6.72 31.13 0.21 -1.15 16 14 C -0.11 -2.34 2.73 -10.56 -0.03 -2.37 16 15 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 16 C 0.10 1.62 4.86 85.00 0.41 2.03 16 17 N -0.62 -16.30 3.43 -819.33 -2.81 -19.11 16 18 C 0.60 18.69 7.86 86.56 0.68 19.37 16 19 O -0.59 -23.78 16.64 -4.19 -0.07 -23.85 16 20 C -0.26 -6.56 6.27 -18.98 -0.12 -6.68 16 21 C 0.09 1.44 10.62 67.31 0.72 2.16 16 22 O -0.18 -3.20 10.53 -3.92 -0.04 -3.24 16 23 C 0.03 0.56 7.39 22.93 0.17 0.73 16 24 C -0.10 -1.42 10.06 22.35 0.22 -1.19 16 25 C -0.09 -1.06 10.01 22.28 0.22 -0.84 16 26 C -0.13 -2.11 10.04 22.28 0.22 -1.89 16 27 C -0.10 -2.42 9.89 22.39 0.22 -2.20 16 28 C -0.12 -3.16 6.29 -20.09 -0.13 -3.29 16 29 C 0.13 4.14 6.54 85.07 0.56 4.69 16 30 C -0.12 -3.27 2.59 -10.62 -0.03 -3.30 16 31 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.26 15.82 8.31 -92.71 -0.77 15.04 16 33 H 0.36 15.86 4.05 -92.71 -0.38 15.48 16 34 H 0.05 1.67 7.98 -2.39 -0.02 1.65 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.10 1.11 6.48 -2.38 -0.02 1.10 16 39 H 0.12 1.00 7.55 -2.39 -0.02 0.98 16 40 H 0.26 1.77 4.44 -2.91 -0.01 1.76 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.18 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.11 3.25 7.56 -2.91 -0.02 3.22 16 45 H 0.06 2.25 8.06 -2.39 -0.02 2.23 16 46 H 0.05 1.89 6.96 -2.39 -0.02 1.88 16 Total: -1.00 -82.00 367.56 3.44 -78.56 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.58 Total: 22.47 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 5.06 Total: -5.56 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.99 Total: -116.69 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.11 Total: -27.08 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.31 kcal Total: -82.00 3.44 -78.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026434109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.737 kcal (2) G-P(sol) polarization free energy of solvation -81.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds