Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99752 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99933 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99926 * 3 2 1 7 7 C 1.38817 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99459 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99547 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.91112 * 34.66469 * 10 9 7 12 12 C 1.53865 * 109.92568 * 273.54713 * 10 9 7 13 13 C 1.54128 * 106.49821 * 242.35364 * 12 10 9 14 14 C 1.54847 * 104.63101 * 335.49812 * 13 12 10 15 15 H 1.08994 * 113.73532 * 273.72449 * 14 13 12 16 16 C 1.54215 * 108.04769 * 146.45020 * 14 13 12 17 17 N 1.49340 * 106.39849 * 272.62428 * 16 14 13 18 18 C 1.34779 * 125.32668 * 181.54282 * 17 16 14 19 19 O 1.21651 * 119.99953 * 180.02562 * 18 17 16 20 20 C 1.47080 * 120.00270 * 0.06544 * 18 17 16 21 21 C 1.36052 * 127.13746 * 0.02674 * 20 18 17 22 22 O 1.33814 * 109.84928 * 179.97438 * 21 20 18 23 23 C 1.34909 * 111.34775 * 0.02562 * 22 21 20 24 24 C 1.38968 * 133.11053 * 180.02562 * 23 22 21 25 25 C 1.37841 * 119.97124 * 179.97438 * 24 23 22 26 26 C 1.38690 * 120.65286 * 359.97438 * 25 24 23 27 27 C 1.37843 * 120.20440 * 359.97438 * 26 25 24 28 28 C 1.39110 * 119.62532 * 359.73719 * 27 26 25 29 29 C 1.47336 * 109.05645 * 1.60000 * 17 16 14 30 30 C 1.53714 * 109.91987 * 155.98584 * 10 9 7 31 31 H 1.08994 * 112.96929 * 264.46435 * 30 10 9 32 32 H 0.96993 * 120.00007 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00268 * 0.02562 * 9 7 2 34 34 H 1.09010 * 110.05019 * 1.61082 * 12 10 9 35 35 H 1.08999 * 110.05244 * 123.03936 * 12 10 9 36 36 H 1.09007 * 110.40573 * 94.28233 * 13 12 10 37 37 H 1.08999 * 110.40730 * 216.59406 * 13 12 10 38 38 H 1.08997 * 109.82178 * 32.52248 * 16 14 13 39 39 H 1.08992 * 109.81896 * 153.46961 * 16 14 13 40 40 H 1.07999 * 125.07571 * 0.02562 * 21 20 18 41 41 H 1.07997 * 120.01088 * 359.97151 * 24 23 22 42 42 H 1.07995 * 119.67136 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.89355 * 180.02562 * 26 25 24 44 44 H 1.07996 * 120.18743 * 180.02562 * 27 26 25 45 45 H 1.08999 * 110.30276 * 217.10794 * 29 17 16 46 46 H 1.08999 * 110.29876 * 94.95923 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4477 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9741 -3.5570 0.5805 12 6 2.3966 -4.0655 -1.4459 13 6 1.6714 -5.4007 -1.7044 14 6 1.4825 -6.0217 -0.2985 15 1 2.3369 -6.6071 0.0409 16 6 0.1538 -6.8045 -0.2967 17 7 -0.9124 -5.8246 0.0682 18 6 -2.2212 -6.1135 0.2096 19 8 -3.0088 -5.2364 0.5101 20 6 -2.6973 -7.4895 0.0015 21 6 -1.9495 -8.5754 -0.3343 22 8 -2.7346 -9.6544 -0.4341 23 6 -4.0232 -9.3499 -0.1753 24 6 -5.1906 -10.1034 -0.1500 25 6 -6.3922 -9.5015 0.1563 26 6 -6.4513 -8.1456 0.4418 27 6 -5.3038 -7.3822 0.4227 28 6 -4.0848 -7.9805 0.1207 29 6 -0.3031 -4.4950 0.2464 30 6 1.1771 -4.7706 0.5866 31 1 1.3577 -4.9397 1.6481 32 1 -0.4850 -0.8400 -0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 2.0410 -3.3060 -2.1424 35 1 3.4732 -4.1969 -1.5545 36 1 0.7040 -5.2229 -2.1744 37 1 2.2832 -6.0507 -2.3298 38 1 -0.0296 -7.2239 -1.2859 39 1 0.1970 -7.6041 0.4428 40 1 -0.8817 -8.5678 -0.4954 41 1 -5.1563 -11.1601 -0.3703 42 1 -7.2965 -10.0916 0.1742 43 1 -7.3993 -7.6867 0.6807 44 1 -5.3501 -6.3265 0.6454 45 1 -0.7869 -3.9641 1.0663 46 1 -0.3782 -3.9180 -0.6753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026434110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = 27.758410 kcal Electronic energy + Delta-G solvation = -29390.412251 eV Core-core repulsion = 25440.129513 eV Total energy + Delta-G solvation = -3950.282738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.84691 -40.45005 -38.41063 -38.10305 -35.28811 -33.62357 -33.05075 -31.03661 -30.68638 -30.16754 -28.88581 -28.35690 -25.54498 -24.66241 -23.50765 -23.28561 -22.52054 -22.06660 -19.93897 -19.54306 -19.07696 -18.10897 -17.39739 -17.17707 -16.61232 -16.34050 -16.05471 -15.94079 -15.08140 -14.94598 -14.79328 -14.29494 -14.00795 -13.79861 -13.57541 -13.47910 -13.20775 -13.16230 -12.71885 -12.59365 -12.53532 -12.35623 -12.15277 -11.63692 -11.24288 -11.22045 -10.77671 -10.69599 -10.63139 -10.54802 -10.40711 -10.36480 -10.07760 -9.96881 -9.85311 -9.16595 -8.94682 -8.91654 -8.65991 -8.48790 -7.04540 -6.09034 -3.10563 0.51255 1.04282 1.55254 2.34062 2.86591 3.15897 3.51932 3.54740 3.56801 3.70893 4.10149 4.16103 4.33745 4.52346 4.56358 4.67522 4.69040 4.73813 4.85960 5.02720 5.10475 5.12486 5.18043 5.21396 5.31785 5.38132 5.50595 5.59973 5.63827 5.72412 5.78478 5.81475 5.84699 5.91135 5.93572 6.07649 6.11929 6.19883 6.22919 6.30586 6.32624 6.36990 6.39893 6.52084 6.69441 6.78584 6.98153 7.46954 7.82061 8.18824 8.75607 9.21815 10.08046 10.21730 11.38631 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.002673 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.014039 B =10473.344483 C =11760.647633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.082 2.918 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.737 5.737 10 C 0.189 3.811 11 H 0.055 0.945 12 C -0.145 4.145 13 C -0.117 4.117 14 C -0.102 4.102 15 H 0.105 0.895 16 C 0.092 3.908 17 N -0.613 5.613 18 C 0.596 3.404 19 O -0.530 6.530 20 C -0.216 4.216 21 C 0.046 3.954 22 O -0.185 6.185 23 C 0.045 3.955 24 C -0.108 4.108 25 C -0.094 4.094 26 C -0.134 4.134 27 C -0.058 4.058 28 C -0.093 4.093 29 C 0.120 3.880 30 C -0.105 4.105 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.369 0.631 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.226 0.774 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -24.338 -1.259 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.381 5.381 10 C 0.078 3.922 11 H 0.073 0.927 12 C -0.186 4.186 13 C -0.155 4.155 14 C -0.121 4.121 15 H 0.123 0.877 16 C -0.031 4.031 17 N -0.347 5.347 18 C 0.385 3.615 19 O -0.407 6.407 20 C -0.221 4.221 21 C -0.021 4.021 22 O -0.085 6.085 23 C -0.002 4.002 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.076 4.076 28 C -0.094 4.094 29 C -0.001 4.001 30 C -0.125 4.125 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.205 0.795 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.099 0.901 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.146 -22.419 -1.154 23.031 hybrid contribution 0.100 -1.574 -0.048 1.578 sum -5.046 -23.993 -1.202 24.547 Atomic orbital electron populations 1.70846 1.06044 1.28560 1.53180 1.25770 0.97040 1.01028 1.00381 0.83206 0.73841 0.75419 0.76220 1.22337 1.21418 1.22192 1.20055 0.91999 0.85745 1.48750 0.91694 1.42715 1.04947 1.00669 1.89750 1.20601 0.93769 0.85033 0.92815 0.92665 1.22958 0.98955 0.95932 1.00716 1.22439 1.00813 0.97321 0.94917 1.23161 0.95471 0.96078 0.97426 0.87651 1.22804 0.88092 0.92418 0.99742 1.48926 1.05688 1.11206 1.68894 1.16723 0.80763 0.86371 0.77624 1.90825 1.53655 1.48115 1.48120 1.21001 0.93252 0.94725 1.13085 1.25368 0.96912 0.83141 0.96694 1.83870 1.16408 1.35591 1.72582 1.19623 0.83841 0.93792 1.02933 1.19918 0.88258 0.99792 1.04698 1.20957 0.96642 0.95043 0.98513 1.21140 0.98426 0.93927 1.01728 1.20786 0.89860 1.01018 0.95977 1.19436 0.93094 0.92732 1.04166 1.22153 0.92189 0.83059 1.02692 1.23231 0.94469 0.95300 0.99462 0.89177 0.93298 0.79509 0.90821 0.92833 0.91779 0.92104 0.90595 0.91062 0.75871 0.84916 0.84627 0.84986 0.84296 0.90060 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 3 Si 1.08 26.03 29.92 -169.99 -5.09 20.94 16 4 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.33 -9.22 9.95 -15.06 -0.15 -9.37 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.74 -17.79 4.79 -52.63 -0.25 -18.04 16 10 C 0.19 3.51 3.24 -67.11 -0.22 3.29 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.14 -2.38 6.56 -25.69 -0.17 -2.54 16 13 C -0.12 -1.48 5.56 -25.17 -0.14 -1.62 16 14 C -0.10 -1.14 4.18 -87.26 -0.36 -1.50 16 15 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.09 0.92 4.36 -1.83 -0.01 0.92 16 17 N -0.61 -9.01 3.38 -170.48 -0.58 -9.58 16 18 C 0.60 9.90 7.84 -12.67 -0.10 9.80 16 19 O -0.53 -10.90 16.54 5.23 0.09 -10.81 16 20 C -0.22 -2.98 6.28 -103.25 -0.65 -3.63 16 21 C 0.05 0.48 10.60 29.95 0.32 0.80 16 22 O -0.18 -2.03 10.53 5.31 0.06 -1.98 16 23 C 0.04 0.52 7.39 -38.56 -0.28 0.24 16 24 C -0.11 -0.99 10.06 -39.46 -0.40 -1.39 16 25 C -0.09 -0.77 10.01 -39.56 -0.40 -1.16 16 26 C -0.13 -1.30 10.04 -39.56 -0.40 -1.69 16 27 C -0.06 -0.75 9.88 -39.40 -0.39 -1.14 16 28 C -0.09 -1.27 6.29 -104.98 -0.66 -1.93 16 29 C 0.12 2.08 4.40 -2.87 -0.01 2.07 16 30 C -0.10 -1.59 4.04 -87.78 -0.35 -1.94 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.26 7.94 6.77 -40.82 -0.28 7.66 16 33 H 0.37 9.31 4.16 -40.82 -0.17 9.14 16 34 H 0.07 1.44 7.91 -51.92 -0.41 1.03 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.62 6.79 -51.93 -0.35 0.27 16 39 H 0.07 0.54 6.87 -51.93 -0.36 0.19 16 40 H 0.23 1.48 4.28 -52.49 -0.22 1.25 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.14 1.93 7.54 -52.49 -0.40 1.54 16 45 H 0.08 1.61 8.02 -51.93 -0.42 1.19 16 46 H 0.08 1.58 6.30 -51.93 -0.33 1.26 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -35.11 364.93 -9.87 -44.99 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.90 Total: 9.81 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -4.47 Total: -12.19 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.07 Total: -56.26 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.14 Total: -12.79 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.11 -9.87 -44.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026434110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.746 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds