Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48504 * 109.46814 * 270.00225 * 3 2 1 5 5 H 1.48502 * 109.47415 * 29.99883 * 3 2 1 6 6 H 1.48498 * 109.47260 * 150.00262 * 3 2 1 7 7 C 1.38811 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99691 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99842 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.51096 * 32.47081 * 10 9 7 12 12 C 1.55814 * 109.55716 * 268.85101 * 10 9 7 13 13 C 1.54843 * 102.28905 * 202.53729 * 12 10 9 14 14 C 1.54144 * 104.34603 * 38.93979 * 13 12 10 15 15 H 1.09004 * 111.89476 * 98.84913 * 14 13 12 16 16 C 1.54466 * 109.63810 * 223.65574 * 14 13 12 17 17 N 1.48341 * 104.30665 * 138.91812 * 16 14 13 18 18 C 1.34772 * 128.19854 * 138.49797 * 17 16 14 19 19 O 1.21647 * 119.99841 * 352.91120 * 18 17 16 20 20 C 1.47084 * 120.00131 * 172.91599 * 18 17 16 21 21 C 1.36051 * 127.13790 * 351.52585 * 20 18 17 22 22 O 1.33810 * 109.84833 * 179.82953 * 21 20 18 23 23 C 1.34908 * 111.34965 * 0.45971 * 22 21 20 24 24 C 1.38964 * 133.11414 * 179.73186 * 23 22 21 25 25 C 1.37846 * 119.97158 * 180.02562 * 24 23 22 26 26 C 1.38683 * 120.65676 * 359.95125 * 25 24 23 27 27 C 1.37841 * 120.19774 * 0.02659 * 26 25 24 28 28 C 1.39108 * 119.63330 * 359.97438 * 27 26 25 29 29 C 1.48340 * 103.60405 * 318.22661 * 17 16 14 30 30 C 1.54155 * 110.45481 * 155.00606 * 10 9 7 31 31 H 1.09001 * 112.65190 * 19.39896 * 30 10 9 32 32 H 0.97006 * 119.99794 * 359.97438 * 1 2 3 33 33 H 0.97000 * 119.99604 * 0.02562 * 9 7 2 34 34 H 1.08991 * 110.35473 * 84.65108 * 12 10 9 35 35 H 1.09006 * 111.58023 * 320.97715 * 12 10 9 36 36 H 1.08998 * 110.45620 * 280.22785 * 13 12 10 37 37 H 1.08993 * 110.56234 * 157.70831 * 13 12 10 38 38 H 1.08995 * 110.46654 * 20.20634 * 16 14 13 39 39 H 1.09003 * 110.46618 * 257.61947 * 16 14 13 40 40 H 1.08001 * 125.07804 * 0.02562 * 21 20 18 41 41 H 1.08001 * 120.01550 * 0.03755 * 24 23 22 42 42 H 1.08003 * 119.67076 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.90434 * 179.97438 * 26 25 24 44 44 H 1.08007 * 120.18510 * 179.97438 * 27 26 25 45 45 H 1.08995 * 110.46755 * 160.48000 * 29 17 16 46 46 H 1.08999 * 110.46806 * 282.94442 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9954 -3.5570 0.5457 12 6 2.2923 -4.1225 -1.4700 13 6 2.5067 -5.6468 -1.3020 14 6 1.4936 -6.0575 -0.2152 15 1 0.5887 -6.4875 -0.6447 16 6 2.1693 -7.0185 0.7877 17 7 1.6709 -6.5752 2.1127 18 6 1.2739 -7.3370 3.1512 19 8 1.1778 -8.5425 3.0196 20 6 0.9568 -6.7107 4.4438 21 6 1.1633 -5.4143 4.8010 22 8 0.7438 -5.2165 6.0561 23 6 0.2541 -6.3522 6.5950 24 6 -0.2839 -6.6581 7.8392 25 6 -0.7110 -7.9408 8.1084 26 6 -0.6110 -8.9356 7.1473 27 6 -0.0806 -8.6510 5.9073 28 6 0.3536 -7.3599 5.6248 29 6 1.7193 -5.0951 2.0264 30 6 1.1943 -4.7781 0.6088 31 1 0.1319 -4.5344 0.6132 32 1 -0.4850 0.8401 0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 3.1847 -3.6497 -1.8799 35 1 1.4241 -3.9213 -2.0977 36 1 3.5245 -5.8542 -0.9719 37 1 2.2961 -6.1682 -2.2357 38 1 3.2538 -6.9219 0.7366 39 1 1.8677 -8.0475 0.5919 40 1 1.5977 -4.6569 4.1652 41 1 -0.3675 -5.8911 8.5950 42 1 -1.1279 -8.1732 9.0772 43 1 -0.9490 -9.9366 7.3714 44 1 -0.0024 -9.4260 5.1592 45 1 1.0725 -4.6480 2.7812 46 1 2.7430 -4.7398 2.1440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026434111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 23.212104 kcal Electronic energy + Delta-G solvation = -29158.498398 eV Core-core repulsion = 25208.018517 eV Total energy + Delta-G solvation = -3950.479881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.77340 -40.24714 -38.34714 -38.04610 -35.20425 -33.64250 -32.94834 -31.12996 -30.62308 -29.88938 -29.35005 -28.23658 -25.21242 -24.80219 -23.54358 -22.95625 -22.39831 -22.17610 -20.34464 -19.33552 -19.07079 -18.08619 -17.33235 -17.00118 -16.52330 -16.24033 -16.02224 -15.67688 -15.26353 -15.12741 -14.43580 -14.32191 -14.08837 -13.96638 -13.66903 -13.32748 -13.08349 -12.82837 -12.70362 -12.49492 -12.40378 -12.13851 -11.86502 -11.71260 -11.23682 -11.18878 -10.87959 -10.83483 -10.75078 -10.39032 -10.38097 -10.30271 -10.27868 -10.06434 -9.94771 -9.71647 -8.94879 -8.88912 -8.78158 -8.43602 -7.02221 -5.83922 -3.13079 0.57413 1.09176 1.59059 2.43534 2.85321 3.13651 3.38571 3.44150 3.45801 3.57047 4.18910 4.24154 4.50770 4.58624 4.61287 4.63210 4.76482 4.87792 4.92105 5.06658 5.14351 5.21288 5.24194 5.35406 5.41049 5.51156 5.54479 5.59817 5.62138 5.74385 5.83933 5.92281 5.93593 5.97684 5.98848 6.03028 6.13002 6.17101 6.22963 6.26887 6.36577 6.37329 6.43629 6.60951 6.72907 6.85698 6.96955 7.49719 7.63455 8.11266 8.34317 9.45832 10.02557 10.36444 11.38339 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003018 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.052856 B = 9275.549708 C =11223.650494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.184 3.816 11 H 0.062 0.938 12 C -0.141 4.141 13 C -0.117 4.117 14 C -0.101 4.101 15 H 0.084 0.916 16 C 0.113 3.887 17 N -0.622 5.622 18 C 0.610 3.390 19 O -0.542 6.542 20 C -0.228 4.228 21 C 0.064 3.936 22 O -0.181 6.181 23 C 0.044 3.956 24 C -0.105 4.105 25 C -0.096 4.096 26 C -0.135 4.135 27 C -0.062 4.062 28 C -0.091 4.091 29 C 0.092 3.908 30 C -0.107 4.107 31 H 0.091 0.909 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.229 0.771 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 -16.242 10.787 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.072 3.928 11 H 0.080 0.920 12 C -0.182 4.182 13 C -0.155 4.155 14 C -0.121 4.121 15 H 0.102 0.898 16 C -0.008 4.008 17 N -0.355 5.355 18 C 0.401 3.599 19 O -0.421 6.421 20 C -0.232 4.232 21 C -0.004 4.004 22 O -0.080 6.080 23 C -0.002 4.002 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.153 4.153 27 C -0.080 4.080 28 C -0.092 4.092 29 C -0.030 4.030 30 C -0.127 4.127 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.245 0.755 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.100 0.900 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.709 -16.551 11.014 19.954 hybrid contribution 0.128 1.061 -0.266 1.101 sum 1.837 -15.490 10.747 18.942 Atomic orbital electron populations 1.69657 1.05109 1.25751 1.57398 1.24739 0.95479 0.97700 1.02838 0.86229 0.78674 0.83947 0.77548 1.21735 1.21800 1.20742 1.19221 0.90967 0.84076 1.43035 0.91161 1.42477 1.05727 0.99717 1.88210 1.21381 0.93726 0.85045 0.92604 0.92045 1.23383 1.01551 0.92719 1.00537 1.22385 0.97863 0.97842 0.97429 1.22724 0.98988 0.95053 0.95334 0.89759 1.22618 0.98155 0.99415 0.80656 1.49021 1.64408 1.07935 1.14143 1.16603 0.76425 0.85509 0.81351 1.90759 1.54067 1.13871 1.83437 1.20890 1.12097 0.94337 0.95920 1.25451 0.94948 0.97221 0.82803 1.83919 1.64156 1.33881 1.26051 1.19646 1.01168 0.83722 0.95661 1.19953 1.01597 0.97759 0.93042 1.20939 0.99093 0.91604 0.99741 1.21104 1.01132 0.99813 0.93222 1.20698 0.95600 0.94688 0.96984 1.19414 1.02568 0.95073 0.92157 1.23123 1.01833 0.79007 0.99083 1.23097 1.01435 0.95582 0.92571 0.89083 0.93453 0.78167 0.92199 0.91452 0.91733 0.92192 0.90614 0.90133 0.75536 0.84817 0.84669 0.85126 0.84573 0.89970 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.24 -6.22 9.96 -15.06 -0.15 -6.37 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.34 5.16 -51.40 -0.27 -16.60 16 10 C 0.18 3.15 3.14 -65.83 -0.21 2.94 16 11 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 12 C -0.14 -2.22 6.58 -24.26 -0.16 -2.38 16 13 C -0.12 -1.42 6.37 -25.16 -0.16 -1.58 16 14 C -0.10 -1.27 3.90 -88.15 -0.34 -1.61 16 15 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.11 1.39 6.63 -2.26 -0.01 1.37 16 17 N -0.62 -8.39 3.31 -170.28 -0.56 -8.96 16 18 C 0.61 9.40 7.89 -12.67 -0.10 9.30 16 19 O -0.54 -9.74 16.62 5.24 0.09 -9.65 16 20 C -0.23 -3.23 6.24 -103.25 -0.64 -3.88 16 21 C 0.06 0.78 10.45 29.95 0.31 1.10 16 22 O -0.18 -2.35 10.53 5.33 0.06 -2.30 16 23 C 0.04 0.57 7.39 -38.56 -0.28 0.29 16 24 C -0.11 -1.06 10.06 -39.46 -0.40 -1.45 16 25 C -0.10 -0.82 10.01 -39.56 -0.40 -1.22 16 26 C -0.13 -1.28 10.04 -39.56 -0.40 -1.67 16 27 C -0.06 -0.76 9.90 -39.40 -0.39 -1.15 16 28 C -0.09 -1.26 6.29 -104.98 -0.66 -1.92 16 29 C 0.09 1.17 5.27 -2.26 -0.01 1.15 16 30 C -0.11 -1.53 3.62 -88.14 -0.32 -1.85 16 31 H 0.09 1.44 7.83 -51.93 -0.41 1.04 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.38 9.42 7.63 -40.82 -0.31 9.11 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.71 7.26 -51.93 -0.38 0.33 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.83 7.27 -51.93 -0.38 0.45 16 39 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 40 H 0.23 2.28 5.00 -52.49 -0.26 2.02 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.14 1.73 7.58 -52.48 -0.40 1.33 16 45 H 0.08 1.00 4.94 -51.93 -0.26 0.75 16 46 H 0.08 0.98 7.21 -51.93 -0.37 0.61 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -31.67 371.36 -9.85 -41.52 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.05 Total: 9.47 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.42 Total: -9.35 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.10 Total: -51.73 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.14 Total: -11.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.67 -9.85 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026434111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.733 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds