Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48504 * 109.46831 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47168 * 299.99932 * 3 2 1 6 6 H 1.48501 * 109.47179 * 60.00308 * 3 2 1 7 7 C 1.38811 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99990 * 179.97438 * 9 7 2 11 11 H 1.09007 * 110.54414 * 32.37650 * 10 9 7 12 12 C 1.54950 * 110.08760 * 270.08963 * 10 9 7 13 13 C 1.56409 * 105.61900 * 232.86468 * 12 10 9 14 14 C 1.50993 * 101.59313 * 335.51907 * 13 12 10 15 15 H 1.09002 * 110.04497 * 290.65183 * 14 13 12 16 16 C 1.50269 * 125.72370 * 156.26492 * 14 13 12 17 17 N 1.49219 * 104.89314 * 215.81619 * 16 14 13 18 18 C 1.34775 * 126.06012 * 186.96408 * 17 16 14 19 19 O 1.21645 * 120.00308 * 184.00672 * 18 17 16 20 20 C 1.47084 * 119.99636 * 4.00848 * 18 17 16 21 21 C 1.36052 * 127.14483 * 353.74372 * 20 18 17 22 22 O 1.33801 * 109.85191 * 180.02562 * 21 20 18 23 23 C 1.34914 * 111.35394 * 359.97438 * 22 21 20 24 24 C 1.38966 * 133.12213 * 180.28756 * 23 22 21 25 25 C 1.37834 * 119.97357 * 180.08414 * 24 23 22 26 26 C 1.38685 * 120.65662 * 359.62007 * 25 24 23 27 27 C 1.37839 * 120.19952 * 0.16636 * 26 25 24 28 28 C 1.39110 * 119.62880 * 0.02802 * 27 26 25 29 29 C 1.49694 * 107.88125 * 6.69853 * 17 16 14 30 30 C 1.50301 * 110.49334 * 155.00076 * 10 9 7 31 31 H 1.09000 * 109.99860 * 39.02466 * 30 10 9 32 32 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 33 33 H 0.96998 * 120.00216 * 0.02562 * 9 7 2 34 34 H 1.08995 * 109.81332 * 114.07240 * 12 10 9 35 35 H 1.09000 * 110.78612 * 352.15568 * 12 10 9 36 36 H 1.09005 * 110.99701 * 217.44596 * 13 12 10 37 37 H 1.09000 * 111.03502 * 93.61489 * 13 12 10 38 38 H 1.08999 * 110.45499 * 96.90323 * 16 14 13 39 39 H 1.09005 * 110.23876 * 334.61631 * 16 14 13 40 40 H 1.07998 * 125.07204 * 359.97438 * 21 20 18 41 41 H 1.08004 * 120.00846 * 359.95679 * 24 23 22 42 42 H 1.08008 * 119.67289 * 179.83785 * 25 24 23 43 43 H 1.07998 * 119.89992 * 180.19349 * 26 25 24 44 44 H 1.08006 * 120.18437 * 179.97438 * 27 26 25 45 45 H 1.08998 * 110.84278 * 143.56779 * 29 17 16 46 46 H 1.08997 * 110.84635 * 266.98310 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9964 -3.5573 0.5442 12 6 2.3250 -4.1159 -1.4573 13 6 1.7844 -5.5811 -1.5426 14 6 1.8585 -6.0164 -0.0987 15 1 2.8995 -6.1208 0.2071 16 6 1.0393 -7.1069 0.5321 17 7 0.7638 -6.6268 1.9178 18 6 0.1709 -7.3348 2.8995 19 8 -0.0658 -6.8093 3.9707 20 6 -0.1897 -8.7431 2.6756 21 6 -0.1023 -9.4380 1.5092 22 8 -0.5221 -10.6946 1.6964 23 6 -0.9038 -10.8998 2.9741 24 6 -1.3973 -12.0082 3.6517 25 6 -1.7092 -11.9139 4.9910 26 6 -1.5285 -10.7222 5.6769 27 6 -1.0360 -9.6134 5.0227 28 6 -0.7217 -9.6961 3.6701 29 6 1.2684 -5.2217 2.0264 30 6 1.2166 -4.7507 0.5935 31 1 0.1801 -4.6388 0.2751 32 1 -0.4849 0.8400 0.0004 33 1 0.3556 -2.3880 -0.0005 34 1 3.3958 -4.0976 -1.6600 35 1 1.7974 -3.4785 -2.1669 36 1 2.4270 -6.1986 -2.1702 37 1 0.7561 -5.5983 -1.9036 38 1 1.6027 -8.0396 0.5588 39 1 0.1062 -7.2420 -0.0150 40 1 0.2521 -9.0353 0.5719 41 1 -1.5382 -12.9425 3.1286 42 1 -2.0949 -12.7777 5.5122 43 1 -1.7741 -10.6629 6.7270 44 1 -0.8958 -8.6853 5.5571 45 1 0.6118 -4.6213 2.6559 46 1 2.2898 -5.2047 2.4067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026434112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 36.663434 kcal Electronic energy + Delta-G solvation = -28870.435483 eV Core-core repulsion = 24920.538895 eV Total energy + Delta-G solvation = -3949.896588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.87213 -40.57904 -38.52817 -38.14184 -35.45048 -33.52481 -33.12255 -30.99534 -30.74117 -30.36609 -28.86550 -28.65833 -25.56861 -24.55625 -23.51710 -23.11211 -22.53826 -21.99115 -20.33783 -19.62004 -19.14141 -17.92141 -17.43473 -17.10406 -16.60306 -16.27989 -16.09879 -15.84133 -15.10550 -14.89187 -14.72663 -14.32481 -14.08628 -13.97143 -13.79865 -13.68407 -13.11280 -12.90603 -12.77817 -12.58045 -12.29256 -12.19661 -11.98583 -11.62361 -11.48824 -11.26306 -11.10705 -10.84013 -10.80718 -10.53660 -10.41425 -10.18893 -10.13177 -10.02065 -9.79555 -9.60423 -8.97695 -8.94948 -8.74768 -8.52669 -6.99949 -5.79474 -3.08835 0.48691 1.01304 1.52262 2.31694 2.75088 3.11301 3.41795 3.47544 3.49788 3.51051 3.98443 4.08520 4.23675 4.53557 4.55338 4.65963 4.71145 4.74264 4.99085 4.99754 5.09905 5.12945 5.15576 5.16139 5.32130 5.46442 5.51477 5.54317 5.63578 5.77245 5.81697 5.87733 5.90537 5.92538 5.96204 6.06881 6.08019 6.14705 6.20222 6.27339 6.28950 6.30657 6.45494 6.56900 6.74159 6.75968 7.00910 7.42649 7.68417 8.11712 8.38490 9.50074 10.06310 10.40604 11.42950 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.002316 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.323771 B =12084.404253 C =13017.659928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.195 3.805 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.097 4.097 14 C -0.131 4.131 15 H 0.084 0.916 16 C 0.107 3.893 17 N -0.620 5.620 18 C 0.601 3.399 19 O -0.534 6.534 20 C -0.219 4.219 21 C 0.051 3.949 22 O -0.184 6.184 23 C 0.045 3.955 24 C -0.107 4.107 25 C -0.094 4.094 26 C -0.134 4.134 27 C -0.059 4.059 28 C -0.093 4.093 29 C 0.132 3.868 30 C -0.117 4.117 31 H 0.084 0.916 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.226 0.774 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.138 0.862 45 H 0.086 0.914 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -26.266 3.057 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.084 3.916 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.136 4.136 14 C -0.150 4.150 15 H 0.102 0.898 16 C -0.015 4.015 17 N -0.355 5.355 18 C 0.390 3.610 19 O -0.412 6.412 20 C -0.223 4.223 21 C -0.017 4.017 22 O -0.084 6.084 23 C -0.002 4.002 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.152 4.152 27 C -0.077 4.077 28 C -0.094 4.094 29 C 0.012 3.988 30 C -0.137 4.137 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.241 0.759 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.105 0.895 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.330 -26.076 3.546 26.318 hybrid contribution 0.175 1.090 -0.123 1.111 sum -0.156 -24.986 3.422 25.220 Atomic orbital electron populations 1.69668 1.05114 1.25606 1.57562 1.24754 0.95499 0.97734 1.02906 0.86142 0.78794 0.84205 0.77181 1.20548 1.21906 1.21873 1.19281 0.91015 0.84074 1.42775 0.91081 1.42510 1.05701 0.99658 1.88246 1.19949 0.94205 0.85093 0.92345 0.92541 1.23645 1.00173 0.93791 1.00651 1.21763 1.01370 0.97358 0.93083 1.22167 0.99985 0.94870 0.97984 0.89778 1.21574 0.99658 0.97463 0.82814 1.49688 1.59223 1.15394 1.11223 1.16680 0.77321 0.83805 0.83156 1.90798 1.54534 1.70897 1.24958 1.20992 1.11826 0.95425 0.94101 1.25336 0.95394 0.80933 1.00031 1.83874 1.66858 1.29810 1.27852 1.19623 1.02216 0.96260 0.82077 1.19927 1.02643 0.95965 0.94048 1.20955 0.99064 0.98333 0.92844 1.21132 1.01004 0.92598 1.00489 1.20757 0.95608 0.99439 0.91921 1.19433 1.03021 0.92024 0.94926 1.21529 0.99739 0.79981 0.97601 1.22537 1.01723 0.95705 0.93708 0.89811 0.93524 0.78143 0.92629 0.90589 0.92051 0.91505 0.90771 0.90757 0.75865 0.84890 0.84628 0.85018 0.84382 0.89539 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.44 9.96 -15.06 -0.15 -6.59 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.72 -17.14 5.07 -53.73 -0.27 -17.41 16 10 C 0.20 3.53 3.34 -68.24 -0.23 3.30 16 11 H 0.06 1.05 8.09 -51.92 -0.42 0.63 16 12 C -0.14 -2.20 6.69 -23.87 -0.16 -2.36 16 13 C -0.10 -1.12 6.72 -25.91 -0.17 -1.30 16 14 C -0.13 -1.47 2.74 -90.31 -0.25 -1.72 16 15 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.11 1.05 4.86 -3.89 -0.02 1.03 16 17 N -0.62 -8.43 3.42 -172.99 -0.59 -9.03 16 18 C 0.60 9.27 7.86 -12.67 -0.10 9.17 16 19 O -0.53 -10.12 16.63 5.24 0.09 -10.03 16 20 C -0.22 -2.86 6.27 -103.25 -0.65 -3.50 16 21 C 0.05 0.50 10.62 29.95 0.32 0.82 16 22 O -0.18 -1.96 10.53 5.33 0.06 -1.90 16 23 C 0.04 0.50 7.39 -38.56 -0.28 0.22 16 24 C -0.11 -0.94 10.06 -39.46 -0.40 -1.33 16 25 C -0.09 -0.72 10.01 -39.56 -0.40 -1.12 16 26 C -0.13 -1.20 10.04 -39.56 -0.40 -1.60 16 27 C -0.06 -0.71 9.89 -39.40 -0.39 -1.10 16 28 C -0.09 -1.20 6.29 -104.98 -0.66 -1.86 16 29 C 0.13 2.01 6.82 -3.31 -0.02 1.99 16 30 C -0.12 -1.76 2.46 -90.33 -0.22 -1.99 16 31 H 0.08 1.39 7.94 -51.93 -0.41 0.97 16 32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.38 9.86 7.68 -40.82 -0.31 9.55 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.55 6.50 -51.93 -0.34 0.21 16 39 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 40 H 0.23 1.43 4.44 -52.49 -0.23 1.20 16 41 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 42 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.14 1.76 7.56 -52.48 -0.40 1.36 16 45 H 0.09 1.51 8.06 -51.93 -0.42 1.10 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -33.19 373.93 -9.92 -43.11 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.27 Total: 7.97 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -4.27 Total: -8.39 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.14 Total: -53.47 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.14 Total: -11.94 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.19 -9.92 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026434112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.778 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds