Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 119.99734 * 2 1 4 4 H 1.48501 * 109.47471 * 270.00034 * 3 2 1 5 5 H 1.48496 * 109.47287 * 30.00200 * 3 2 1 6 6 H 1.48504 * 109.47052 * 150.00215 * 3 2 1 7 7 C 1.38817 * 120.00490 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99893 * 196.90783 * 7 2 1 9 9 N 1.36944 * 119.99694 * 16.89840 * 7 2 1 10 10 C 1.47151 * 120.97716 * 206.25282 * 9 7 2 11 11 C 1.53297 * 108.38182 * 230.51482 * 10 9 7 12 12 O 1.42961 * 109.26551 * 307.72477 * 11 10 9 13 13 C 1.42966 * 114.16735 * 62.49897 * 12 11 10 14 14 H 1.08997 * 109.51238 * 57.45512 * 13 12 11 15 15 C 1.52996 * 109.51004 * 177.55155 * 13 12 11 16 16 N 1.46500 * 109.47335 * 299.89608 * 15 13 12 17 17 C 1.34776 * 120.00375 * 179.97438 * 16 15 13 18 18 O 1.21568 * 119.99580 * 0.02562 * 17 16 15 19 19 C 1.47777 * 120.00540 * 180.02562 * 17 16 15 20 20 C 1.40653 * 119.74100 * 359.97438 * 19 17 16 21 21 C 1.35725 * 120.84444 * 180.02562 * 20 19 17 22 22 C 1.40707 * 120.01960 * 359.97438 * 21 20 19 23 23 C 1.40481 * 121.04849 * 180.02562 * 22 21 20 24 24 C 1.36133 * 119.72268 * 179.97438 * 23 22 21 25 25 C 1.39363 * 121.01438 * 0.27491 * 24 23 22 26 26 C 1.36095 * 120.95000 * 359.43442 * 25 24 23 27 27 C 1.40654 * 119.65819 * 0.56034 * 26 25 24 28 28 C 1.38483 * 119.74843 * 180.02562 * 19 17 16 29 29 C 1.47149 * 120.98048 * 26.23699 * 9 7 2 30 30 H 0.96993 * 120.00923 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.68693 * 350.23852 * 10 9 7 32 32 H 1.08997 * 109.68184 * 110.76092 * 10 9 7 33 33 H 1.09000 * 109.51217 * 67.62308 * 11 10 9 34 34 H 1.08993 * 109.51424 * 187.77941 * 11 10 9 35 35 H 1.09003 * 109.47402 * 179.89861 * 15 13 12 36 36 H 1.09003 * 109.47309 * 59.89712 * 15 13 12 37 37 H 0.97006 * 120.00058 * 0.02562 * 16 15 13 38 38 H 1.07998 * 119.58250 * 0.02562 * 20 19 17 39 39 H 1.08000 * 119.98973 * 179.97438 * 21 20 19 40 40 H 1.08008 * 120.13611 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.49478 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.52797 * 179.72478 * 25 24 23 43 43 H 1.07996 * 120.17108 * 180.28187 * 26 25 24 44 44 H 1.07996 * 120.27572 * 359.96012 * 28 19 17 45 45 H 1.08996 * 109.68553 * 9.75134 * 29 9 7 46 46 H 1.09003 * 109.70780 * 249.22440 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2715 9 7 1.3700 -2.3624 -0.3458 10 6 1.8341 -3.6634 0.1614 11 6 1.9812 -4.6208 -1.0268 12 8 0.7654 -4.6296 -1.7788 13 6 0.4242 -3.3664 -2.3546 14 1 1.2368 -3.0277 -2.9972 15 6 -0.8550 -3.5106 -3.1816 16 7 -0.6379 -4.4888 -4.2503 17 6 -1.6344 -4.7803 -5.1097 18 8 -2.7132 -4.2311 -4.9982 19 6 -1.4156 -5.7675 -6.1873 20 6 -0.1652 -6.3993 -6.3116 21 6 0.0604 -7.3090 -7.2933 22 6 -0.9635 -7.6314 -8.2030 23 6 -0.7538 -8.5702 -9.2269 24 6 -1.7636 -8.8622 -10.0920 25 6 -3.0055 -8.2393 -9.9826 26 6 -3.2479 -7.3291 -9.0003 27 6 -2.2288 -7.0017 -8.0879 28 6 -2.4430 -6.0627 -7.0677 29 6 0.1973 -2.3447 -1.2346 30 1 -0.4851 0.8399 0.0004 31 1 2.7975 -3.5420 0.6564 32 1 1.1063 -4.0630 0.8675 33 1 2.8002 -4.2871 -1.6640 34 1 2.1901 -5.6260 -0.6607 35 1 -1.1156 -2.5467 -3.6188 36 1 -1.6672 -3.8493 -2.5384 37 1 0.2228 -4.9273 -4.3389 38 1 0.6257 -6.1576 -5.6170 39 1 1.0260 -7.7855 -7.3762 40 1 0.2045 -9.0581 -9.3273 41 1 -1.5985 -9.5848 -10.8775 42 1 -3.7882 -8.4858 -10.6847 43 1 -4.2164 -6.8573 -8.9245 44 1 -3.4016 -5.5751 -6.9690 45 1 0.0768 -1.3501 -1.6637 46 1 -0.6960 -2.6114 -0.6698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035586225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -11.714039 kcal Electronic energy + Delta-G solvation = -28261.345230 eV Core-core repulsion = 24309.350838 eV Total energy + Delta-G solvation = -3951.994392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78576 -39.46643 -38.43457 -36.42384 -34.88650 -34.34833 -33.00663 -31.58768 -31.21952 -30.30399 -29.51062 -27.43314 -25.84439 -24.00315 -23.48115 -23.28468 -22.21802 -21.67968 -20.76877 -19.70518 -18.17404 -17.56724 -17.12956 -16.71427 -16.02952 -15.91467 -15.35253 -15.13692 -14.96369 -14.79715 -14.39738 -14.23266 -13.92880 -13.80432 -13.73001 -13.66050 -13.40407 -13.27719 -12.93990 -12.82767 -12.28990 -12.21151 -11.60946 -11.53357 -11.48464 -11.15224 -11.11616 -10.87243 -10.76204 -10.44764 -10.28984 -10.27780 -10.08586 -9.88205 -9.67961 -9.11841 -9.01969 -8.81835 -8.57906 -8.20760 -6.79220 -5.87233 -3.31293 0.11600 0.54679 1.68946 2.34137 3.22536 3.26031 3.33323 3.39898 3.41429 3.88100 4.21197 4.27809 4.41291 4.48901 4.50440 4.67308 4.77361 4.92931 4.98019 4.99497 5.06606 5.17404 5.32917 5.48034 5.50992 5.58658 5.59623 5.74108 5.81973 5.83701 5.87520 5.90686 5.99802 6.05944 6.09358 6.17727 6.20807 6.24567 6.33951 6.46193 6.48508 6.61188 6.64840 6.75314 7.03680 7.44879 7.61727 7.68192 7.80415 8.28668 8.30533 9.07795 9.70706 10.27595 11.20841 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.002082 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.845560 B =13447.892743 C =13973.351560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.132 3.868 16 N -0.713 5.713 17 C 0.552 3.448 18 O -0.541 6.541 19 C -0.128 4.128 20 C -0.088 4.088 21 C -0.112 4.112 22 C -0.036 4.036 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.123 4.123 26 C -0.094 4.094 27 C -0.063 4.063 28 C -0.037 4.037 29 C 0.152 3.848 30 H 0.256 0.744 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.143 0.857 45 H 0.096 0.904 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -17.828 -18.847 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.364 5.364 17 C 0.339 3.661 18 O -0.420 6.420 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.130 4.130 22 C -0.036 4.036 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.141 4.141 26 C -0.112 4.112 27 C -0.063 4.063 28 C -0.056 4.056 29 C 0.026 3.974 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.161 0.839 45 H 0.115 0.885 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.051 -17.403 -18.710 25.634 hybrid contribution 1.072 0.874 0.130 1.389 sum -0.979 -16.529 -18.580 24.887 Atomic orbital electron populations 1.70008 1.05243 1.25825 1.53442 1.25070 0.95372 0.98540 1.00646 0.86240 0.79054 0.83410 0.77757 1.21330 1.21634 1.20401 1.19198 0.92651 0.84472 1.42326 0.91305 1.44047 1.33706 1.01375 1.52658 1.21600 0.98639 0.87555 0.93968 1.23007 0.86149 0.99623 0.94008 1.87779 1.42251 1.31488 1.69456 1.23157 0.94969 0.86495 0.95873 0.92588 1.21466 0.97846 0.92343 0.87493 1.45900 1.15470 1.44026 1.30966 1.18234 0.84232 0.81982 0.81635 1.90780 1.24955 1.52828 1.73428 1.19955 0.95196 0.99925 0.98019 1.20959 0.95967 0.95699 0.97979 1.20919 0.98692 0.98479 0.94929 1.18223 0.93297 0.96320 0.95785 1.21059 0.99587 0.97534 0.94776 1.20920 0.93309 0.99484 0.99029 1.20873 0.97361 0.97229 0.98650 1.21134 0.98413 0.97483 0.94213 1.18072 0.93911 0.97685 0.96660 1.21517 0.98936 0.93855 0.91309 1.21306 0.89511 0.97607 0.88999 0.93358 0.91964 0.95532 0.93867 0.89999 0.89781 0.90524 0.76293 0.85340 0.84963 0.85376 0.85875 0.85795 0.85175 0.83944 0.88544 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.14 55.49 0.62 -25.12 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 21.31 29.59 -169.99 -5.03 16.28 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.90 9.65 -15.05 -0.15 -7.05 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -14.64 3.05 -171.84 -0.52 -15.17 16 10 C 0.11 2.23 6.74 -3.53 -0.02 2.20 16 11 C 0.05 0.85 6.98 37.31 0.26 1.11 16 12 O -0.39 -7.11 10.14 -35.23 -0.36 -7.46 16 13 C 0.05 1.02 2.86 -26.58 -0.08 0.94 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 15 C 0.13 2.25 5.37 -4.04 -0.02 2.23 16 16 N -0.71 -10.44 5.40 -61.27 -0.33 -10.78 16 17 C 0.55 8.52 7.77 -12.36 -0.10 8.43 16 18 O -0.54 -10.16 16.30 5.31 0.09 -10.08 16 19 C -0.13 -1.61 5.87 -105.00 -0.62 -2.23 16 20 C -0.09 -0.90 9.44 -39.57 -0.37 -1.27 16 21 C -0.11 -1.01 9.73 -39.55 -0.38 -1.40 16 22 C -0.04 -0.35 5.75 -106.76 -0.61 -0.96 16 23 C -0.11 -0.86 9.76 -39.49 -0.39 -1.25 16 24 C -0.11 -0.76 9.95 -39.92 -0.40 -1.15 16 25 C -0.12 -0.89 9.95 -39.93 -0.40 -1.29 16 26 C -0.09 -0.81 9.77 -39.44 -0.39 -1.19 16 27 C -0.06 -0.66 5.74 -106.85 -0.61 -1.28 16 28 C -0.04 -0.44 9.34 -38.72 -0.36 -0.80 16 29 C 0.15 3.56 4.73 -3.54 -0.02 3.54 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.40 5.02 6.33 -40.82 -0.26 4.77 16 38 H 0.13 1.10 6.34 -52.49 -0.33 0.76 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16 42 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 1.66 7.61 -52.49 -0.40 1.26 16 45 H 0.10 2.48 6.14 -51.93 -0.32 2.16 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -32.45 379.12 -10.90 -43.35 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.35 Total: 4.69 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.73 Total: -1.42 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.24 Total: -51.06 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.27 Total: -17.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.45 -10.90 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035586225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.633 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds