Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00278 * 2 1 4 4 H 1.48499 * 109.46662 * 88.76381 * 3 2 1 5 5 H 1.48497 * 109.46643 * 328.77084 * 3 2 1 6 6 H 1.48497 * 109.47283 * 208.76607 * 3 2 1 7 7 C 1.38816 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00100 * 35.50820 * 7 2 1 9 9 N 1.36938 * 119.99809 * 215.51805 * 7 2 1 10 10 C 1.46868 * 125.33714 * 358.69544 * 9 7 2 11 11 C 1.54465 * 106.66042 * 195.33577 * 10 9 7 12 12 C 1.53386 * 102.53931 * 332.27175 * 11 10 9 13 13 H 1.09002 * 105.69955 * 277.67139 * 12 11 10 14 14 C 1.49270 * 114.28421 * 161.97514 * 12 11 10 15 15 N 1.45261 * 114.71756 * 258.59141 * 14 12 11 16 16 C 1.34772 * 120.15539 * 143.67172 * 15 14 12 17 17 O 1.21660 * 119.99538 * 186.17335 * 16 15 14 18 18 C 1.46972 * 120.00449 * 6.17100 * 16 15 14 19 19 C 1.35801 * 125.13750 * 187.47110 * 18 16 15 20 20 C 1.46248 * 106.08238 * 179.97438 * 19 18 16 21 21 C 1.39707 * 134.19264 * 180.02562 * 20 19 18 22 22 C 1.36616 * 119.70865 * 179.97438 * 21 20 19 23 23 C 1.38833 * 120.44864 * 359.96905 * 22 21 20 24 24 C 1.37800 * 120.73975 * 0.03119 * 23 22 21 25 25 C 1.39024 * 119.85701 * 359.97438 * 24 23 22 26 26 O 1.34712 * 133.24385 * 180.35094 * 25 24 23 27 27 C 1.46825 * 119.54032 * 323.90595 * 15 14 12 28 28 C 1.52963 * 107.40236 * 54.76945 * 27 15 14 29 29 C 1.48013 * 125.33599 * 178.39274 * 9 7 2 30 30 H 1.09006 * 110.22419 * 303.30851 * 29 9 7 31 31 H 0.96999 * 120.00219 * 185.03138 * 1 2 3 32 32 H 1.09000 * 110.02006 * 314.63685 * 10 9 7 33 33 H 1.08999 * 110.01854 * 75.98746 * 10 9 7 34 34 H 1.08996 * 110.79926 * 90.53671 * 11 10 9 35 35 H 1.09003 * 110.79466 * 214.01116 * 11 10 9 36 36 H 1.09005 * 108.44306 * 20.48140 * 14 12 11 37 37 H 1.08999 * 108.44347 * 137.79434 * 14 12 11 38 38 H 1.07998 * 126.95715 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.14430 * 359.95118 * 21 20 19 40 40 H 1.08001 * 119.77721 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.63163 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.07095 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.86874 * 295.30289 * 27 15 14 44 44 H 1.08996 * 109.93269 * 174.27824 * 27 15 14 45 45 H 1.09002 * 109.38596 * 178.38503 * 28 27 15 46 46 H 1.08999 * 109.38280 * 58.70687 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4715 2.0614 1.3998 5 1 1.4609 2.6449 -0.7259 6 1 3.5606 1.4327 -0.6737 7 6 2.0102 -1.2022 -0.0005 8 1 1.6209 -2.0502 -0.5441 9 7 3.1885 -1.3128 0.6884 10 6 3.8366 -0.2315 1.4420 11 6 5.2884 -0.6864 1.7092 12 6 5.1612 -2.2149 1.7232 13 1 4.8185 -2.4732 2.7252 14 6 6.4531 -2.9402 1.5409 15 7 6.6742 -3.4602 0.2027 16 6 7.9128 -3.4582 -0.3283 17 8 8.0782 -3.7889 -1.4874 18 6 9.0638 -3.0566 0.4926 19 6 10.3285 -2.8778 0.0313 20 6 11.1304 -2.4844 1.1894 21 6 12.4767 -2.1624 1.3777 22 6 12.9247 -1.8266 2.6238 23 6 12.0513 -1.8027 3.7027 24 6 10.7197 -2.1169 3.5380 25 6 10.2405 -2.4619 2.2794 26 8 9.0220 -2.8034 1.8175 27 6 5.5386 -3.9826 -0.5676 28 6 4.4768 -2.8828 -0.6202 29 6 4.0053 -2.5425 0.7955 30 1 3.4088 -3.3564 1.2076 31 1 -0.4850 -0.8368 0.0737 32 1 3.8353 0.6861 0.8537 33 1 3.3157 -0.0702 2.3857 34 1 5.9500 -0.3605 0.9066 35 1 5.6379 -0.3184 2.6738 36 1 7.2680 -2.2619 1.7941 37 1 6.4789 -3.7788 2.2367 38 1 10.6723 -3.0004 -0.9851 39 1 13.1604 -2.1793 0.5418 40 1 13.9654 -1.5779 2.7707 41 1 12.4195 -1.5349 4.6821 42 1 10.0499 -2.0953 4.3849 43 1 5.1325 -4.8664 -0.0757 44 1 5.8600 -4.2358 -1.5779 45 1 3.6281 -3.2272 -1.2111 46 1 4.9010 -1.9923 -1.0840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036884783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = 27.025046 kcal Electronic energy + Delta-G solvation = -29908.339269 eV Core-core repulsion = 25958.024730 eV Total energy + Delta-G solvation = -3950.314540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.64031 -41.54522 -39.95989 -38.79207 -37.10320 -34.78237 -33.87261 -33.66142 -32.14720 -31.37094 -30.63089 -29.86876 -27.14452 -25.56072 -24.93372 -23.78194 -23.52364 -22.60706 -22.49885 -21.44858 -19.90053 -19.49974 -19.01015 -18.35582 -17.67636 -17.55881 -17.04932 -16.87478 -16.63179 -16.17088 -15.99141 -15.58237 -15.11171 -15.01162 -14.94363 -14.77860 -14.45733 -14.20877 -14.17535 -13.99095 -13.72651 -13.40729 -13.27606 -13.05044 -13.01545 -12.80134 -12.54035 -12.30978 -12.11184 -11.91498 -11.85521 -11.67136 -11.47248 -11.30704 -11.26503 -10.90720 -10.48876 -9.90804 -9.65457 -9.27129 -9.14289 -8.68576 -5.31314 -0.50632 0.37039 0.76953 1.28486 1.36557 1.47931 1.66207 1.80458 1.97326 2.51704 2.74321 2.89661 3.12186 3.29648 3.49507 3.59932 3.71864 3.77536 3.85263 3.94819 4.04067 4.12496 4.19089 4.28442 4.32793 4.34408 4.37774 4.47505 4.51197 4.57070 4.60410 4.72394 4.75187 4.79692 4.89239 4.90636 4.98203 5.10423 5.15104 5.24555 5.28233 5.37247 5.40179 5.42431 5.50507 5.58324 5.63973 6.00623 6.12040 6.15296 6.74490 6.83455 7.51624 8.16573 8.81534 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.003097 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.003083 B = 9039.667395 C = 9857.075326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.067 4.067 3 Si 1.093 2.907 4 H -0.275 1.275 5 H -0.308 1.308 6 H -0.286 1.286 7 C -0.321 4.321 8 H 0.053 0.947 9 N -0.625 5.625 10 C 0.106 3.894 11 C -0.111 4.111 12 C -0.099 4.099 13 H 0.093 0.907 14 C 0.127 3.873 15 N -0.591 5.591 16 C 0.595 3.405 17 O -0.553 6.553 18 C -0.044 4.044 19 C -0.109 4.109 20 C -0.166 4.166 21 C -0.069 4.069 22 C -0.136 4.136 23 C -0.074 4.074 24 C -0.122 4.122 25 C 0.044 3.956 26 O -0.181 6.181 27 C 0.121 3.879 28 C -0.128 4.128 29 C 0.170 3.830 30 H 0.048 0.952 31 H 0.253 0.747 32 H 0.022 0.978 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.175 0.825 39 H 0.148 0.852 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.517 -6.205 10.449 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.263 4.263 3 Si 0.923 3.077 4 H -0.201 1.201 5 H -0.237 1.237 6 H -0.214 1.214 7 C -0.449 4.449 8 H 0.071 0.929 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.149 4.149 12 C -0.119 4.119 13 H 0.111 0.889 14 C 0.005 3.995 15 N -0.321 5.321 16 C 0.384 3.616 17 O -0.434 6.434 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.167 4.167 21 C -0.087 4.087 22 C -0.154 4.154 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.004 4.004 26 O -0.084 6.084 27 C -0.001 4.001 28 C -0.169 4.169 29 C 0.064 3.936 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.192 0.808 39 H 0.165 0.835 40 H 0.179 0.821 41 H 0.188 0.812 42 H 0.170 0.830 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 29.022 -4.779 9.932 31.044 hybrid contribution -0.861 -1.616 -0.763 1.984 sum 28.160 -6.395 9.169 30.298 Atomic orbital electron populations 1.70978 1.07566 1.28643 1.50995 1.26580 0.95858 1.03707 1.00170 0.83409 0.73237 0.73844 0.77201 1.20142 1.23679 1.21367 1.19757 0.96441 0.98870 1.29846 0.92869 1.45160 1.24275 1.07345 1.58310 1.21789 0.93711 0.91686 0.94672 1.22407 0.94584 0.94818 1.03074 1.20699 0.94104 0.95756 1.01295 0.88911 1.20795 0.97247 0.99450 0.82037 1.47659 1.06875 1.59754 1.17784 1.16986 0.81654 0.77796 0.85196 1.90837 1.84847 1.51094 1.16590 1.21603 0.95965 1.09541 0.82194 1.22966 0.90677 0.99154 1.00190 1.20136 0.96460 1.07754 0.92335 1.20725 0.92074 0.96487 0.99406 1.21253 1.01900 1.00555 0.91679 1.21523 0.91009 0.95608 1.01050 1.20416 0.97289 1.03469 0.92816 1.20380 0.82641 1.00856 0.96529 1.84221 1.30344 1.71955 1.21846 1.21669 0.84640 0.96276 0.97503 1.22205 0.97671 0.97867 0.99129 1.20698 0.90431 0.89084 0.93410 0.93403 0.93787 0.96036 0.95394 0.92180 0.87171 0.87788 0.89254 0.80764 0.83465 0.82063 0.81223 0.82962 0.88582 0.89329 0.92546 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.25 13.70 21.65 0.30 -59.96 16 2 C -0.07 -4.01 5.39 84.86 0.46 -3.56 16 3 Si 1.09 55.17 24.88 68.60 1.71 56.88 16 4 H -0.27 -12.79 7.05 99.48 0.70 -12.09 16 5 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 6 H -0.29 -13.83 6.68 99.48 0.66 -13.17 16 7 C -0.32 -18.50 9.93 84.03 0.83 -17.66 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 9 N -0.62 -30.03 3.02 -672.76 -2.03 -32.06 16 10 C 0.11 4.48 5.39 86.81 0.47 4.95 16 11 C -0.11 -3.42 6.37 31.22 0.20 -3.22 16 12 C -0.10 -2.84 2.45 -12.25 -0.03 -2.87 16 13 H 0.09 2.34 8.05 -2.39 -0.02 2.32 16 14 C 0.13 3.04 5.19 85.42 0.44 3.49 16 15 N -0.59 -16.56 2.99 -835.54 -2.50 -19.06 16 16 C 0.59 17.78 7.64 86.53 0.66 18.45 16 17 O -0.55 -19.44 16.23 -4.22 -0.07 -19.51 16 18 C -0.04 -1.12 6.65 23.99 0.16 -0.97 16 19 C -0.11 -2.49 10.81 23.79 0.26 -2.24 16 20 C -0.17 -3.28 6.38 -20.23 -0.13 -3.41 16 21 C -0.07 -0.93 10.06 22.25 0.22 -0.71 16 22 C -0.14 -1.25 9.98 22.03 0.22 -1.04 16 23 C -0.07 -0.66 10.01 22.31 0.22 -0.44 16 24 C -0.12 -1.65 10.07 22.35 0.23 -1.42 16 25 C 0.04 0.87 7.41 23.07 0.17 1.04 16 26 O -0.18 -4.14 7.21 -12.96 -0.09 -4.23 16 27 C 0.12 3.53 6.44 86.31 0.56 4.09 16 28 C -0.13 -4.71 5.18 30.60 0.16 -4.55 16 29 C 0.17 6.39 3.41 44.32 0.15 6.54 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.25 16.22 8.73 -92.71 -0.81 15.41 16 32 H 0.02 1.00 2.92 -2.39 -0.01 0.99 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.39 4.62 -2.38 -0.01 2.38 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 42 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.09 2.69 6.98 -2.39 -0.02 2.67 16 45 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.72 362.37 3.47 -72.25 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.91 Total: 9.21 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.25 Total: -3.52 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -4.23 Total: -111.08 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.16 Total: -23.74 kcal Atomic # 14 Polarization: 55.17 SS G_CDS: 1.71 Total: 56.88 kcal Total: -75.72 3.47 -72.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036884783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.274 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds