Wall clock time and date at job start Sat Apr 11 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48509 * 109.47258 * 270.00048 * 3 2 1 5 5 H 1.48493 * 109.47280 * 29.99786 * 3 2 1 6 6 H 1.48501 * 109.47467 * 150.00279 * 3 2 1 7 7 C 1.38814 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.47436 * 126.05868 * 0.02562 * 9 7 2 11 11 C 1.54504 * 107.14705 * 181.60643 * 10 9 7 12 12 C 1.56031 * 102.61369 * 22.84635 * 11 10 9 13 13 H 1.08999 * 112.85751 * 202.93362 * 12 11 10 14 14 C 1.53094 * 106.39543 * 78.38077 * 12 11 10 15 15 C 1.52836 * 110.57443 * 195.41585 * 14 12 11 16 16 N 1.47080 * 107.95079 * 57.34590 * 15 14 12 17 17 C 1.34774 * 121.15575 * 122.75311 * 16 15 14 18 18 O 1.21655 * 120.00629 * 352.79059 * 17 16 15 19 19 C 1.46984 * 119.99783 * 172.78999 * 17 16 15 20 20 C 1.35805 * 125.13207 * 172.24252 * 19 17 16 21 21 C 1.46242 * 106.07883 * 179.89438 * 20 19 17 22 22 C 1.39706 * 134.18800 * 180.11821 * 21 20 19 23 23 C 1.36618 * 119.71034 * 180.31310 * 22 21 20 24 24 C 1.38842 * 120.44519 * 359.95113 * 23 22 21 25 25 C 1.37795 * 120.74185 * 0.02576 * 24 23 22 26 26 C 1.39033 * 119.85858 * 359.97438 * 25 24 23 27 27 O 1.34715 * 133.24950 * 180.02562 * 26 25 24 28 28 C 1.46754 * 117.62527 * 302.69353 * 16 15 14 29 29 C 1.46466 * 126.06098 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.42360 * 269.25641 * 29 9 7 31 31 H 0.96998 * 120.00125 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.90699 * 300.98906 * 10 9 7 33 33 H 1.09002 * 109.90310 * 62.23616 * 10 9 7 34 34 H 1.09000 * 110.78134 * 141.12193 * 11 10 9 35 35 H 1.08997 * 110.78365 * 264.56540 * 11 10 9 36 36 H 1.09001 * 109.25932 * 315.70178 * 14 12 11 37 37 H 1.09002 * 109.25353 * 75.17185 * 14 12 11 38 38 H 1.08998 * 109.76418 * 176.97471 * 15 14 12 39 39 H 1.08998 * 109.76029 * 297.68571 * 15 14 12 40 40 H 1.08000 * 126.96190 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.14678 * 0.26256 * 22 21 20 42 42 H 1.07998 * 119.77804 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.62970 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.07186 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.22718 * 292.23235 * 28 16 15 46 46 H 1.09005 * 109.22561 * 172.83415 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1406 -2.5436 -0.0005 11 6 -0.4379 -4.0592 0.0413 12 6 0.8713 -4.6464 0.6543 13 1 1.0210 -5.6971 0.4058 14 6 0.7947 -4.3917 2.1619 15 6 2.1675 -4.5756 2.8081 16 7 3.1071 -3.6588 2.1450 17 6 3.7992 -2.7407 2.8484 18 8 3.5580 -2.5700 4.0285 19 6 4.8453 -1.9458 2.1896 20 6 5.5002 -0.8970 2.7514 21 6 6.4435 -0.4201 1.7407 22 6 7.3895 0.6071 1.6993 23 6 8.1298 0.8005 0.5675 24 6 7.9487 -0.0171 -0.5399 25 6 7.0213 -1.0360 -0.5191 26 6 6.2560 -1.2522 0.6213 27 8 5.2968 -2.1451 0.9337 28 6 3.2649 -3.7804 0.6911 29 6 1.9198 -3.7267 0.0005 30 1 2.0473 -4.0470 -1.0335 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5660 -2.0577 0.8775 33 1 -0.5593 -2.1084 -0.9080 34 1 -1.2932 -4.2680 0.6839 35 1 -0.6032 -4.4488 -0.9631 36 1 0.4483 -3.3732 2.3373 37 1 0.0904 -5.0929 2.6096 38 1 2.1094 -4.3393 3.8706 39 1 2.5014 -5.6049 2.6774 40 1 5.3553 -0.4975 3.7442 41 1 7.5343 1.2460 2.5579 42 1 8.8611 1.5945 0.5341 43 1 8.5414 0.1473 -1.4276 44 1 6.8896 -1.6657 -1.3866 45 1 3.7489 -4.7295 0.4607 46 1 3.8875 -2.9627 0.3279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042339974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:20 Heat of formation + Delta-G solvation = 41.418179 kcal Electronic energy + Delta-G solvation = -31353.121289 eV Core-core repulsion = 27403.430882 eV Total energy + Delta-G solvation = -3949.690406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.35311 -39.87880 -38.19364 -37.69209 -34.97507 -33.07103 -32.62565 -31.36511 -30.34124 -29.66594 -28.92494 -28.39299 -25.16903 -24.12223 -23.70322 -22.51668 -22.19133 -21.28045 -20.10675 -19.96122 -18.66220 -17.66427 -17.28177 -16.56092 -16.25000 -15.84572 -15.72413 -14.88716 -14.69813 -14.57792 -14.21255 -13.98933 -13.96339 -13.71662 -13.38350 -13.07753 -13.00490 -12.65983 -12.46215 -12.20425 -12.03175 -11.92352 -11.56440 -11.44168 -11.24767 -10.92102 -10.88616 -10.84122 -10.73619 -10.17473 -10.07038 -10.02438 -9.83470 -9.69665 -9.63803 -9.53446 -8.58482 -8.55271 -8.34667 -8.02533 -6.81336 -5.70369 -3.02469 0.75068 1.43631 2.04756 2.65299 3.26467 3.39984 3.46626 3.48828 3.56511 3.78362 4.47730 4.51266 4.70730 4.94050 5.02982 5.13193 5.17756 5.27475 5.30473 5.35204 5.41575 5.49527 5.57248 5.68158 5.71606 5.76018 5.79194 5.89579 5.93995 5.99906 6.09869 6.19331 6.26260 6.27487 6.30313 6.44089 6.46346 6.47209 6.53970 6.60063 6.68021 6.68467 6.96075 7.00736 7.20576 7.56527 7.62031 7.70429 7.83450 8.25536 8.35184 9.22043 9.83944 10.49973 11.41778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.005552 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.778398 B = 5042.101273 C = 6273.003101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.002 4.002 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.220 4.220 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.143 4.143 12 C -0.103 4.103 13 H 0.076 0.924 14 C -0.122 4.122 15 C 0.116 3.884 16 N -0.580 5.580 17 C 0.609 3.391 18 O -0.531 6.531 19 C 0.002 3.998 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.064 4.064 23 C -0.143 4.143 24 C -0.092 4.092 25 C -0.107 4.107 26 C 0.064 3.936 27 O -0.170 6.170 28 C 0.095 3.905 29 C 0.154 3.846 30 H 0.029 0.971 31 H 0.251 0.749 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.166 0.834 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.061 0.939 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 -6.995 0.905 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.199 4.199 3 Si 0.726 3.274 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.348 4.348 8 H 0.093 0.907 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.123 4.123 13 H 0.095 0.905 14 C -0.160 4.160 15 C -0.006 4.006 16 N -0.310 5.310 17 C 0.396 3.604 18 O -0.410 6.410 19 C -0.048 4.048 20 C -0.146 4.146 21 C -0.138 4.138 22 C -0.082 4.082 23 C -0.161 4.161 24 C -0.110 4.110 25 C -0.126 4.126 26 C 0.016 3.984 27 O -0.072 6.072 28 C -0.028 4.028 29 C 0.046 3.954 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.184 0.816 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.079 0.921 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.198 -6.883 1.344 13.212 hybrid contribution 0.257 1.183 -0.146 1.219 sum 11.454 -5.700 1.198 12.850 Atomic orbital electron populations 1.69939 1.04754 1.24873 1.57089 1.24683 0.95555 0.97322 1.02324 0.86327 0.79111 0.84250 0.77663 1.21593 1.21645 1.20359 1.18874 0.90171 0.82174 1.43585 0.90693 1.44257 1.01511 0.99108 1.86557 1.21219 0.84149 0.88393 1.00842 1.23163 0.96147 0.99644 0.99225 1.22415 0.97128 0.97764 0.94954 0.90531 1.21826 0.95635 1.03535 0.94991 1.21594 0.89069 0.91843 0.98067 1.47694 1.41015 1.33790 1.08548 1.16623 0.79721 0.78690 0.85350 1.90811 1.67880 1.67281 1.15043 1.21927 0.99386 1.00238 0.83243 1.22613 0.95917 0.95738 1.00330 1.19913 1.00150 0.99347 0.94398 1.20331 0.93781 0.95505 0.98577 1.20725 1.01208 1.00781 0.93406 1.20934 0.97215 0.94160 0.98657 1.19993 0.96580 1.00529 0.95454 1.19916 0.91299 0.90967 0.96179 1.84285 1.44784 1.49061 1.29082 1.22049 0.99663 1.02474 0.78637 1.20702 0.90827 0.88038 0.95843 0.95360 0.93863 0.93623 0.94075 0.92213 0.92708 0.89978 0.91837 0.89340 0.91590 0.81634 0.85490 0.85457 0.84864 0.84817 0.92108 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.38 55.49 0.58 -26.54 16 2 C 0.00 -0.07 5.49 -17.43 -0.10 -0.16 16 3 Si 0.90 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 7 C -0.22 -5.95 9.70 -15.06 -0.15 -6.10 16 8 H 0.08 2.01 6.05 -52.49 -0.32 1.70 16 9 N -0.59 -14.28 3.20 -164.39 -0.53 -14.81 16 10 C 0.18 4.22 4.61 -2.74 -0.01 4.21 16 11 C -0.14 -2.58 6.33 -24.32 -0.15 -2.73 16 12 C -0.10 -1.70 3.68 -88.41 -0.33 -2.02 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.12 -2.00 5.04 -26.77 -0.13 -2.13 16 15 C 0.12 1.83 6.44 -3.81 -0.02 1.81 16 16 N -0.58 -10.68 2.97 -175.57 -0.52 -11.20 16 17 C 0.61 12.32 7.67 -12.72 -0.10 12.23 16 18 O -0.53 -11.60 16.32 5.23 0.09 -11.52 16 19 C 0.00 0.03 6.74 -36.91 -0.25 -0.22 16 20 C -0.13 -2.25 10.81 -37.24 -0.40 -2.66 16 21 C -0.14 -2.30 6.38 -105.19 -0.67 -2.97 16 22 C -0.06 -0.87 10.06 -39.62 -0.40 -1.27 16 23 C -0.14 -1.68 9.98 -39.94 -0.40 -2.07 16 24 C -0.09 -1.07 10.01 -39.52 -0.40 -1.46 16 25 C -0.11 -1.49 10.07 -39.45 -0.40 -1.89 16 26 C 0.06 1.10 7.41 -38.35 -0.28 0.81 16 27 O -0.17 -3.14 6.67 2.79 0.02 -3.13 16 28 C 0.09 1.70 5.34 -4.76 -0.03 1.67 16 29 C 0.15 3.00 2.97 -68.27 -0.20 2.80 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.22 7.04 -51.93 -0.37 0.85 16 33 H 0.04 1.09 7.57 -51.93 -0.39 0.69 16 34 H 0.06 0.98 7.97 -51.93 -0.41 0.57 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.69 6.85 -51.93 -0.36 1.34 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.11 2.17 2.84 -52.98 -0.15 2.02 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.62 361.96 -10.50 -43.12 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.15 Total: 2.92 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.42 Total: -2.16 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.47 Total: -52.55 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.62 -10.50 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042339974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.537 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds