Wall clock time and date at job start Sat Apr 11 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48509 * 109.47258 * 270.00048 * 3 2 1 5 5 H 1.48493 * 109.47280 * 29.99786 * 3 2 1 6 6 H 1.48501 * 109.47467 * 150.00279 * 3 2 1 7 7 C 1.38814 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99774 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.47436 * 126.05868 * 0.02562 * 9 7 2 11 11 C 1.54504 * 107.14705 * 181.60643 * 10 9 7 12 12 C 1.56031 * 102.61369 * 22.84635 * 11 10 9 13 13 H 1.08999 * 112.85751 * 202.93362 * 12 11 10 14 14 C 1.53094 * 106.39543 * 78.38077 * 12 11 10 15 15 C 1.52836 * 110.57443 * 195.41585 * 14 12 11 16 16 N 1.47080 * 107.95079 * 57.34590 * 15 14 12 17 17 C 1.34774 * 121.15575 * 122.75311 * 16 15 14 18 18 O 1.21655 * 120.00629 * 352.79059 * 17 16 15 19 19 C 1.46984 * 119.99783 * 172.78999 * 17 16 15 20 20 C 1.35805 * 125.13207 * 172.24252 * 19 17 16 21 21 C 1.46242 * 106.07883 * 179.89438 * 20 19 17 22 22 C 1.39706 * 134.18800 * 180.11821 * 21 20 19 23 23 C 1.36618 * 119.71034 * 180.31310 * 22 21 20 24 24 C 1.38842 * 120.44519 * 359.95113 * 23 22 21 25 25 C 1.37795 * 120.74185 * 0.02576 * 24 23 22 26 26 C 1.39033 * 119.85858 * 359.97438 * 25 24 23 27 27 O 1.34715 * 133.24950 * 180.02562 * 26 25 24 28 28 C 1.46754 * 117.62527 * 302.69353 * 16 15 14 29 29 C 1.46466 * 126.06098 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.42360 * 269.25641 * 29 9 7 31 31 H 0.96998 * 120.00125 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.90699 * 300.98906 * 10 9 7 33 33 H 1.09002 * 109.90310 * 62.23616 * 10 9 7 34 34 H 1.09000 * 110.78134 * 141.12193 * 11 10 9 35 35 H 1.08997 * 110.78365 * 264.56540 * 11 10 9 36 36 H 1.09001 * 109.25932 * 315.70178 * 14 12 11 37 37 H 1.09002 * 109.25353 * 75.17185 * 14 12 11 38 38 H 1.08998 * 109.76418 * 176.97471 * 15 14 12 39 39 H 1.08998 * 109.76029 * 297.68571 * 15 14 12 40 40 H 1.08000 * 126.96190 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.14678 * 0.26256 * 22 21 20 42 42 H 1.07998 * 119.77804 * 179.97438 * 23 22 21 43 43 H 1.07994 * 119.62970 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.07186 * 180.02562 * 25 24 23 45 45 H 1.08996 * 109.22718 * 292.23235 * 28 16 15 46 46 H 1.09005 * 109.22561 * 172.83415 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1406 -2.5436 -0.0005 11 6 -0.4379 -4.0592 0.0413 12 6 0.8713 -4.6464 0.6543 13 1 1.0210 -5.6971 0.4058 14 6 0.7947 -4.3917 2.1619 15 6 2.1675 -4.5756 2.8081 16 7 3.1071 -3.6588 2.1450 17 6 3.7992 -2.7407 2.8484 18 8 3.5580 -2.5700 4.0285 19 6 4.8453 -1.9458 2.1896 20 6 5.5002 -0.8970 2.7514 21 6 6.4435 -0.4201 1.7407 22 6 7.3895 0.6071 1.6993 23 6 8.1298 0.8005 0.5675 24 6 7.9487 -0.0171 -0.5399 25 6 7.0213 -1.0360 -0.5191 26 6 6.2560 -1.2522 0.6213 27 8 5.2968 -2.1451 0.9337 28 6 3.2649 -3.7804 0.6911 29 6 1.9198 -3.7267 0.0005 30 1 2.0473 -4.0470 -1.0335 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5660 -2.0577 0.8775 33 1 -0.5593 -2.1084 -0.9080 34 1 -1.2932 -4.2680 0.6839 35 1 -0.6032 -4.4488 -0.9631 36 1 0.4483 -3.3732 2.3373 37 1 0.0904 -5.0929 2.6096 38 1 2.1094 -4.3393 3.8706 39 1 2.5014 -5.6049 2.6774 40 1 5.3553 -0.4975 3.7442 41 1 7.5343 1.2460 2.5579 42 1 8.8611 1.5945 0.5341 43 1 8.5414 0.1473 -1.4276 44 1 6.8896 -1.6657 -1.3866 45 1 3.7489 -4.7295 0.4607 46 1 3.8875 -2.9627 0.3279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042339974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:19 Heat of formation + Delta-G solvation = 22.309522 kcal Electronic energy + Delta-G solvation = -31353.949902 eV Core-core repulsion = 27403.430882 eV Total energy + Delta-G solvation = -3950.519020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.60577 -41.33794 -39.73778 -38.79775 -36.57188 -34.84339 -33.85467 -33.05155 -31.44677 -31.03938 -30.49291 -29.95969 -26.80486 -25.84649 -25.07778 -23.70941 -23.46506 -22.52764 -21.77548 -21.48161 -20.08691 -19.03467 -18.70858 -18.18710 -17.60589 -17.27261 -16.98117 -16.68467 -16.09512 -16.01882 -15.80429 -15.56754 -15.22076 -14.98154 -14.88831 -14.50485 -14.22634 -14.09539 -13.85573 -13.78962 -13.28958 -13.21775 -13.10609 -13.02727 -12.84433 -12.69267 -12.58313 -12.36145 -12.11104 -11.96106 -11.72378 -11.58972 -11.36160 -11.28822 -11.15712 -11.05031 -10.69304 -9.78061 -9.62472 -9.24802 -8.82943 -7.86205 -5.16068 -0.46947 0.35724 0.79088 1.31550 1.34339 1.36554 1.41541 1.87525 2.15339 2.43197 2.71969 3.20178 3.33566 3.50507 3.60021 3.84369 3.85414 3.93836 4.00139 4.07480 4.13731 4.25021 4.29940 4.37364 4.44583 4.46898 4.55148 4.57548 4.65426 4.69996 4.78646 4.82982 4.88823 4.97421 5.09881 5.13848 5.15658 5.24069 5.29035 5.35170 5.45199 5.47971 5.54191 5.59371 5.65798 5.71954 5.80594 6.02850 6.20700 6.25068 6.87671 7.11292 7.80753 8.45550 9.25067 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.005552 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.778398 B = 5042.101273 C = 6273.003101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.279 1.279 7 C -0.202 4.202 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.086 4.086 13 H 0.128 0.872 14 C -0.116 4.116 15 C 0.113 3.887 16 N -0.581 5.581 17 C 0.598 3.402 18 O -0.563 6.563 19 C -0.029 4.029 20 C -0.132 4.132 21 C -0.165 4.165 22 C -0.076 4.076 23 C -0.135 4.135 24 C -0.077 4.077 25 C -0.124 4.124 26 C 0.036 3.964 27 O -0.178 6.178 28 C 0.095 3.905 29 C 0.142 3.858 30 H 0.040 0.960 31 H 0.241 0.759 32 H 0.002 0.998 33 H 0.001 0.999 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.170 0.830 41 H 0.147 0.853 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.151 0.849 45 H 0.103 0.897 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.927 -8.835 -0.416 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.332 4.332 8 H 0.093 0.907 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.168 4.168 12 C -0.105 4.105 13 H 0.146 0.854 14 C -0.154 4.154 15 C -0.008 4.008 16 N -0.310 5.310 17 C 0.386 3.614 18 O -0.446 6.446 19 C -0.079 4.079 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.094 4.094 23 C -0.153 4.153 24 C -0.094 4.094 25 C -0.142 4.142 26 C -0.012 4.012 27 O -0.080 6.080 28 C -0.027 4.027 29 C 0.035 3.965 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.020 0.980 33 H 0.019 0.981 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.187 0.813 41 H 0.165 0.835 42 H 0.185 0.815 43 H 0.193 0.807 44 H 0.169 0.831 45 H 0.120 0.880 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.638 -8.773 -0.001 16.216 hybrid contribution -0.349 1.780 0.201 1.825 sum 13.289 -6.993 0.200 15.018 Atomic orbital electron populations 1.70141 1.05756 1.24446 1.59596 1.25323 0.96267 0.99974 1.04179 0.85522 0.77813 0.81446 0.77615 1.20893 1.22538 1.20443 1.19097 0.90321 0.83432 1.40349 0.90747 1.44486 1.02095 1.00440 1.86065 1.20957 0.83781 0.92323 0.96875 1.23028 0.97829 0.94867 1.01033 1.22484 0.94310 0.99503 0.94192 0.85428 1.21768 0.96721 1.01352 0.95577 1.21835 0.88315 0.93414 0.97238 1.47869 1.40828 1.33462 1.08838 1.16889 0.80209 0.79009 0.85289 1.90765 1.69114 1.68414 1.16261 1.21852 1.00462 1.01354 0.84197 1.22902 0.96041 0.95495 1.00864 1.20173 1.01373 1.00986 0.94055 1.20741 0.93268 0.94946 1.00396 1.21265 1.00687 1.01067 0.92260 1.21529 0.95751 0.92204 0.99950 1.20447 0.96844 1.01827 0.95084 1.20522 0.91827 0.91268 0.97572 1.84225 1.45502 1.49764 1.28536 1.22065 0.98614 1.03939 0.78089 1.21047 0.92429 0.86080 0.96971 0.94268 0.94927 0.98005 0.98055 0.90435 0.90843 0.95306 0.88183 0.90461 0.87106 0.81299 0.83515 0.81494 0.80692 0.83112 0.87951 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.20 10.38 21.65 0.22 -58.98 16 2 C -0.06 -3.84 5.49 84.86 0.47 -3.38 16 3 Si 0.95 48.92 29.55 68.60 2.03 50.95 16 4 H -0.28 -14.08 7.11 99.48 0.71 -13.38 16 5 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 6 H -0.28 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.20 -11.32 9.70 84.04 0.81 -10.50 16 8 H 0.07 4.12 6.05 -2.91 -0.02 4.11 16 9 N -0.61 -29.96 3.20 -673.99 -2.15 -32.11 16 10 C 0.19 9.10 4.61 86.71 0.40 9.50 16 11 C -0.13 -4.41 6.33 32.16 0.20 -4.20 16 12 C -0.09 -2.52 3.68 -9.36 -0.03 -2.56 16 13 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 14 C -0.12 -3.57 5.04 30.57 0.15 -3.41 16 15 C 0.11 3.34 6.44 86.21 0.56 3.89 16 16 N -0.58 -21.09 2.97 -827.62 -2.45 -23.55 16 17 C 0.60 25.03 7.67 86.54 0.66 25.70 16 18 O -0.56 -25.84 16.32 -4.21 -0.07 -25.91 16 19 C -0.03 -1.18 6.74 24.00 0.16 -1.01 16 20 C -0.13 -4.98 10.81 23.79 0.26 -4.72 16 21 C -0.17 -5.56 6.38 -20.23 -0.13 -5.69 16 22 C -0.08 -1.94 10.06 22.25 0.22 -1.71 16 23 C -0.14 -2.66 9.98 22.04 0.22 -2.44 16 24 C -0.08 -1.49 10.01 22.31 0.22 -1.27 16 25 C -0.12 -3.20 10.07 22.36 0.23 -2.98 16 26 C 0.04 1.21 7.41 23.07 0.17 1.38 16 27 O -0.18 -6.71 6.67 -12.93 -0.09 -6.79 16 28 C 0.10 3.27 5.34 85.77 0.46 3.73 16 29 C 0.14 5.26 2.97 44.79 0.13 5.39 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.00 0.10 7.04 -2.39 -0.02 0.08 16 33 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 34 H 0.08 2.38 7.97 -2.39 -0.02 2.36 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.03 1.19 6.85 -2.39 -0.02 1.18 16 37 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.08 2.48 7.06 -2.39 -0.02 2.46 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.17 5.89 8.06 -2.91 -0.02 5.87 16 41 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 42 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 43 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 45 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.09 3.58 2.84 -19.02 -0.05 3.52 16 Total: -1.00 -78.81 361.96 3.61 -75.20 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.96 Total: 15.49 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.17 Total: 5.71 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.38 Total: -114.64 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.15 Total: -32.70 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -78.81 3.61 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042339974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.509 kcal (2) G-P(sol) polarization free energy of solvation -78.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds