Wall clock time and date at job start Sat Apr 11 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48505 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47341 * 299.99398 * 3 2 1 6 6 H 1.48500 * 109.47407 * 59.99537 * 3 2 1 7 7 C 1.38811 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99822 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.48156 * 126.39934 * 359.97438 * 9 7 2 11 11 C 1.55289 * 107.04317 * 185.02309 * 10 9 7 12 12 C 1.53697 * 101.81877 * 22.43909 * 11 10 9 13 13 H 1.09002 * 111.11019 * 78.61281 * 12 11 10 14 14 C 1.51980 * 114.99751 * 206.55524 * 12 11 10 15 15 C 1.53498 * 107.37045 * 175.29054 * 14 12 11 16 16 N 1.46596 * 110.93028 * 308.44144 * 15 14 12 17 17 C 1.34785 * 119.75583 * 227.68827 * 16 15 14 18 18 O 1.21654 * 119.99748 * 7.33527 * 17 16 15 19 19 C 1.46977 * 119.99934 * 187.33854 * 17 16 15 20 20 C 1.35808 * 125.13080 * 188.19068 * 19 17 16 21 21 C 1.46238 * 106.08259 * 180.02562 * 20 19 17 22 22 C 1.39701 * 134.19432 * 180.02562 * 21 20 19 23 23 C 1.36624 * 119.71509 * 179.97438 * 22 21 20 24 24 C 1.38837 * 120.44196 * 0.06393 * 23 22 21 25 25 C 1.37800 * 120.74399 * 359.90396 * 24 23 22 26 26 C 1.39034 * 119.85342 * 0.06135 * 25 24 23 27 27 O 1.34707 * 133.23928 * 180.02562 * 26 25 24 28 28 C 1.47801 * 120.49144 * 47.40768 * 16 15 14 29 29 C 1.45501 * 126.39939 * 179.97438 * 9 7 2 30 30 H 1.09006 * 109.56538 * 265.82708 * 29 9 7 31 31 H 0.96999 * 120.00171 * 0.02562 * 1 2 3 32 32 H 1.09010 * 109.91297 * 304.36823 * 10 9 7 33 33 H 1.09001 * 109.92023 * 65.46203 * 10 9 7 34 34 H 1.09003 * 110.96011 * 140.57205 * 11 10 9 35 35 H 1.09002 * 110.95988 * 264.27053 * 11 10 9 36 36 H 1.09000 * 109.89100 * 294.86878 * 14 12 11 37 37 H 1.09000 * 109.89663 * 55.89955 * 14 12 11 38 38 H 1.09000 * 109.18568 * 188.02090 * 15 14 12 39 39 H 1.08998 * 109.05608 * 68.77991 * 15 14 12 40 40 H 1.08000 * 126.95883 * 359.97438 * 20 19 17 41 41 H 1.08007 * 120.14289 * 359.67828 * 22 21 20 42 42 H 1.07995 * 119.77742 * 179.97438 * 23 22 21 43 43 H 1.07992 * 119.62815 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.06975 * 180.08812 * 25 24 23 45 45 H 1.08995 * 110.06087 * 68.21194 * 28 16 15 46 46 H 1.08996 * 110.06630 * 189.78299 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1468 -2.5532 0.0005 11 6 -0.4343 -4.0737 0.1305 12 6 0.8682 -4.5872 0.7646 13 1 0.8916 -4.3816 1.8348 14 6 1.1975 -6.0409 0.4676 15 6 2.5756 -6.3325 1.0777 16 7 3.5604 -5.3356 0.6473 17 6 4.7632 -5.7372 0.1907 18 8 4.9813 -6.9205 0.0106 19 6 5.8114 -4.7458 -0.0895 20 6 6.9969 -5.0120 -0.6963 21 6 7.7130 -3.7387 -0.7626 22 6 8.9583 -3.3465 -1.2598 23 6 9.3439 -2.0392 -1.1656 24 6 8.5073 -1.0996 -0.5783 25 6 7.2750 -1.4659 -0.0824 26 6 6.8605 -2.7903 -0.1675 27 8 5.7412 -3.4335 0.2173 28 6 3.2419 -3.8934 0.7046 29 6 1.9081 -3.7214 0.0005 30 1 1.9857 -4.0858 -1.0239 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5803 -2.0196 0.8465 33 1 -0.5633 -2.1717 -0.9317 34 1 -1.2854 -4.2549 0.7870 35 1 -0.5964 -4.5250 -0.8484 36 1 0.4465 -6.6906 0.9171 37 1 1.2293 -6.2014 -0.6101 38 1 2.9051 -7.3222 0.7615 39 1 2.4952 -6.3118 2.1645 40 1 7.3413 -5.9702 -1.0563 41 1 9.6153 -4.0745 -1.7124 42 1 10.3064 -1.7350 -1.5493 43 1 8.8255 -0.0699 -0.5104 44 1 6.6324 -0.7258 0.3710 45 1 3.1619 -3.5691 1.7421 46 1 4.0127 -3.3195 0.1904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042339976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:25 Heat of formation + Delta-G solvation = 24.171710 kcal Electronic energy + Delta-G solvation = -30294.841518 eV Core-core repulsion = 26344.403248 eV Total energy + Delta-G solvation = -3950.438269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.66515 -41.43967 -39.82699 -38.83576 -36.87315 -34.81454 -33.88814 -33.18643 -31.46820 -31.14752 -30.56152 -30.03022 -26.80412 -25.87751 -24.92577 -23.65562 -23.25763 -22.47558 -21.83407 -21.51003 -20.66078 -19.01824 -18.70214 -18.41762 -17.65037 -17.27744 -16.98227 -16.73639 -16.28124 -15.87562 -15.78950 -15.61521 -15.18270 -15.00574 -14.95597 -14.79535 -14.22609 -14.03383 -13.86578 -13.81645 -13.52879 -13.27126 -13.16579 -13.09779 -12.85085 -12.78036 -12.53063 -12.11543 -12.00001 -11.95867 -11.84493 -11.59912 -11.52052 -11.35697 -11.31769 -10.94962 -10.73563 -9.94125 -9.67561 -9.30376 -8.92427 -7.85819 -5.21313 -0.52608 0.33233 0.74060 1.32889 1.43959 1.44674 1.54666 1.77093 1.96978 2.48581 2.70286 3.03774 3.32928 3.45892 3.54770 3.71694 3.88428 3.89587 3.93397 3.98666 4.11774 4.19128 4.24501 4.29239 4.31913 4.42482 4.49222 4.54020 4.57390 4.66763 4.77197 4.83123 4.87516 4.89605 5.05926 5.09739 5.11345 5.13378 5.26722 5.34170 5.37422 5.44776 5.47384 5.52505 5.59104 5.65409 5.76970 5.95850 6.08808 6.18394 6.75012 7.06979 7.75183 8.42834 9.25529 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008559 B = 0.005257 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3270.644572 B = 5325.164148 C = 8396.892618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.099 4.099 13 H 0.078 0.922 14 C -0.107 4.107 15 C 0.108 3.892 16 N -0.592 5.592 17 C 0.596 3.404 18 O -0.545 6.545 19 C -0.055 4.055 20 C -0.103 4.103 21 C -0.161 4.161 22 C -0.062 4.062 23 C -0.133 4.133 24 C -0.073 4.073 25 C -0.135 4.135 26 C 0.035 3.965 27 O -0.190 6.190 28 C 0.114 3.886 29 C 0.148 3.852 30 H 0.009 0.991 31 H 0.246 0.754 32 H 0.024 0.976 33 H 0.001 0.999 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.187 0.813 41 H 0.159 0.841 42 H 0.170 0.830 43 H 0.167 0.833 44 H 0.130 0.870 45 H 0.070 0.930 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.862 -9.520 0.342 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.336 5.336 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.119 4.119 13 H 0.097 0.903 14 C -0.145 4.145 15 C -0.013 4.013 16 N -0.323 5.323 17 C 0.385 3.615 18 O -0.426 6.426 19 C -0.104 4.104 20 C -0.123 4.123 21 C -0.162 4.162 22 C -0.079 4.079 23 C -0.151 4.151 24 C -0.091 4.091 25 C -0.154 4.154 26 C -0.012 4.012 27 O -0.094 6.094 28 C -0.009 4.009 29 C 0.040 3.960 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.019 0.981 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.204 0.796 41 H 0.177 0.823 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.148 0.852 45 H 0.089 0.911 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.664 -9.799 0.406 17.642 hybrid contribution -0.235 1.437 -0.099 1.459 sum 14.429 -8.362 0.308 16.680 Atomic orbital electron populations 1.70159 1.06208 1.25121 1.58361 1.25567 0.96524 1.00744 1.02743 0.85149 0.78595 0.79878 0.76693 1.18615 1.22162 1.21808 1.19341 0.90664 0.83424 1.42629 0.90269 1.44431 1.02456 1.00213 1.86469 1.21354 0.82995 0.92212 0.97752 1.22602 0.97527 0.95091 1.00827 1.22237 0.95066 0.95076 0.99510 0.90347 1.21694 0.96099 0.95156 1.01548 1.21815 0.87691 0.91749 1.00045 1.48227 1.13963 1.08132 1.61998 1.16948 0.81277 0.86122 0.77188 1.90798 1.80995 1.15925 1.54847 1.21988 0.98659 0.82220 1.07528 1.22985 0.91548 0.99069 0.98698 1.20170 0.98063 0.92253 1.05728 1.20782 0.92683 0.97756 0.96726 1.21271 1.01622 0.92077 1.00136 1.21477 0.91186 1.01825 0.94611 1.20384 0.98922 0.90985 1.05087 1.20457 0.85771 0.95536 0.99464 1.84338 1.36830 1.19464 1.68719 1.22014 0.98453 0.78983 1.01420 1.21110 0.92980 0.86391 0.95540 0.97390 0.94455 0.95767 0.98092 0.89550 0.91314 0.86860 0.91800 0.88281 0.89641 0.79558 0.82312 0.81303 0.81587 0.85162 0.91134 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.89 10.43 21.65 0.23 -56.67 16 2 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 3 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -12.84 9.88 84.03 0.83 -12.01 16 8 H 0.08 4.27 7.41 -2.91 -0.02 4.25 16 9 N -0.61 -31.14 3.35 -669.26 -2.24 -33.38 16 10 C 0.18 8.90 5.45 86.85 0.47 9.37 16 11 C -0.12 -4.33 6.54 31.61 0.21 -4.12 16 12 C -0.10 -3.27 2.62 -10.07 -0.03 -3.29 16 13 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 14 C -0.11 -2.67 5.70 30.43 0.17 -2.49 16 15 C 0.11 2.79 6.34 86.53 0.55 3.34 16 16 N -0.59 -19.24 3.02 -823.91 -2.48 -21.72 16 17 C 0.60 20.20 7.62 86.53 0.66 20.86 16 18 O -0.54 -19.32 16.18 -4.20 -0.07 -19.39 16 19 C -0.05 -1.82 6.69 24.00 0.16 -1.66 16 20 C -0.10 -2.85 10.81 23.79 0.26 -2.60 16 21 C -0.16 -4.28 6.38 -20.24 -0.13 -4.41 16 22 C -0.06 -1.16 10.06 22.25 0.22 -0.93 16 23 C -0.13 -2.07 9.98 22.04 0.22 -1.85 16 24 C -0.07 -1.36 10.01 22.31 0.22 -1.13 16 25 C -0.14 -3.59 10.07 22.36 0.23 -3.36 16 26 C 0.04 1.09 7.41 23.07 0.17 1.27 16 27 O -0.19 -6.73 7.07 -12.90 -0.09 -6.82 16 28 C 0.11 4.28 5.24 85.74 0.45 4.73 16 29 C 0.15 6.09 2.77 45.61 0.13 6.21 16 30 H 0.01 0.38 7.90 -2.38 -0.02 0.36 16 31 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.02 1.32 7.21 -2.38 -0.02 1.30 16 33 H 0.00 0.05 7.76 -2.39 -0.02 0.03 16 34 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.69 7.97 -2.39 -0.02 1.68 16 38 H 0.10 2.48 6.92 -2.39 -0.02 2.46 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 43 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.09 3.83 4.09 -21.37 -0.09 3.75 16 Total: -1.00 -71.66 366.66 3.55 -68.11 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.92 Total: 17.59 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 5.26 Total: 4.83 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.50 Total: -111.77 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.16 Total: -26.21 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -71.66 3.55 -68.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042339976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.283 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds