Wall clock time and date at job start Sat Apr 11 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47268 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46673 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47212 * 119.99803 * 3 2 1 7 7 C 1.38811 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.48153 * 126.39764 * 0.03975 * 9 7 2 11 11 C 1.55303 * 107.04732 * 184.97124 * 10 9 7 12 12 C 1.53699 * 101.81117 * 22.44298 * 11 10 9 13 13 H 1.08998 * 111.11155 * 78.60818 * 12 11 10 14 14 C 1.51984 * 114.99812 * 206.54902 * 12 11 10 15 15 C 1.53883 * 107.29170 * 175.43139 * 14 12 11 16 16 N 1.46631 * 110.79816 * 308.25431 * 15 14 12 17 17 C 1.34777 * 119.78517 * 227.68186 * 16 15 14 18 18 O 1.21646 * 120.00436 * 174.20225 * 17 16 15 19 19 C 1.47092 * 119.99607 * 354.20073 * 17 16 15 20 20 C 1.36049 * 127.14071 * 321.13152 * 19 17 16 21 21 O 1.33811 * 109.84808 * 179.88676 * 20 19 17 22 22 C 1.34900 * 111.34900 * 0.40334 * 21 20 19 23 23 C 1.38973 * 133.11589 * 179.78459 * 22 21 20 24 24 C 1.37845 * 119.97528 * 179.97438 * 23 22 21 25 25 C 1.38686 * 120.65443 * 359.97438 * 24 23 22 26 26 C 1.37846 * 120.19768 * 0.02562 * 25 24 23 27 27 C 1.39101 * 119.63289 * 359.95902 * 26 25 24 28 28 C 1.47799 * 120.46196 * 47.54206 * 16 15 14 29 29 C 1.45502 * 126.40001 * 180.02562 * 9 7 2 30 30 H 1.09005 * 109.56854 * 265.87419 * 29 9 7 31 31 H 0.96993 * 119.99555 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.92043 * 304.31601 * 10 9 7 33 33 H 1.09000 * 109.92264 * 65.62092 * 10 9 7 34 34 H 1.08996 * 110.96327 * 140.57373 * 11 10 9 35 35 H 1.09004 * 110.95538 * 264.31883 * 11 10 9 36 36 H 1.09004 * 109.89247 * 294.87807 * 14 12 11 37 37 H 1.09000 * 109.89262 * 55.97909 * 14 12 11 38 38 H 1.08993 * 109.23021 * 68.51257 * 15 14 12 39 39 H 1.09009 * 109.22447 * 187.91151 * 15 14 12 40 40 H 1.08000 * 125.07233 * 0.04578 * 20 19 17 41 41 H 1.08001 * 120.01068 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.67499 * 180.02562 * 24 23 22 43 43 H 1.07996 * 119.90254 * 179.97438 * 25 24 23 44 44 H 1.08007 * 120.18124 * 180.02562 * 26 25 24 45 45 H 1.09006 * 110.06369 * 189.66553 * 28 16 15 46 46 H 1.09006 * 110.06575 * 68.20965 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1466 -2.5532 -0.0008 11 6 -0.4343 -4.0738 0.1284 12 6 0.8677 -4.5875 0.7636 13 1 0.8901 -4.3820 1.8338 14 6 1.1973 -6.0411 0.4666 15 6 2.5767 -6.3325 1.0832 16 7 3.5613 -5.3355 0.6511 17 6 4.7656 -5.7366 0.1979 18 8 5.5452 -4.9226 -0.2598 19 6 5.1372 -7.1585 0.2569 20 6 4.8615 -8.0388 1.2569 21 8 5.3594 -9.2429 0.9523 22 6 5.9892 -9.2265 -0.2406 23 6 6.6560 -10.1990 -0.9761 24 6 7.2132 -9.8788 -2.1956 25 6 7.1159 -8.5911 -2.7012 26 6 6.4582 -7.6133 -1.9860 27 6 5.8919 -7.9253 -0.7545 28 6 3.2413 -3.8936 0.7060 29 6 1.9083 -3.7213 0.0016 30 1 1.9875 -4.0859 -1.0226 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5809 -2.0199 0.8449 33 1 -0.5620 -2.1747 -0.9348 34 1 -1.2860 -4.2552 0.7840 35 1 -0.5948 -4.5249 -0.8509 36 1 0.4458 -6.6909 0.9152 37 1 1.2314 -6.2010 -0.6110 38 1 2.4966 -6.3079 2.1699 39 1 2.9079 -7.3227 0.7701 40 1 4.3193 -7.8018 2.1604 41 1 6.7377 -11.2052 -0.5923 42 1 7.7300 -10.6384 -2.7632 43 1 7.5573 -8.3535 -3.6578 44 1 6.3822 -6.6106 -2.3803 45 1 4.0127 -3.3195 0.1927 46 1 3.1608 -3.5676 1.7431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042379431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:30 Heat of formation + Delta-G solvation = 36.606312 kcal Electronic energy + Delta-G solvation = -29703.450484 eV Core-core repulsion = 25753.551419 eV Total energy + Delta-G solvation = -3949.899065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.84427 -40.06298 -38.19964 -38.07084 -35.43080 -33.22879 -32.85652 -31.27590 -30.67805 -30.12968 -29.03199 -28.35477 -25.02975 -24.43606 -23.62459 -22.64266 -22.28019 -22.13479 -20.14956 -19.71750 -19.08894 -17.92519 -17.37528 -16.65719 -16.57233 -16.13542 -15.95466 -15.31651 -14.99614 -14.74047 -14.40170 -14.30004 -14.10344 -13.90839 -13.55683 -13.36832 -13.15010 -12.87962 -12.60811 -12.55471 -12.26195 -12.16403 -11.88132 -11.56123 -11.33914 -11.22568 -10.96835 -10.82511 -10.74152 -10.38295 -10.16990 -9.99054 -9.88696 -9.82222 -9.64343 -9.48864 -8.92224 -8.62600 -8.52157 -8.41024 -6.85862 -5.71679 -3.05534 0.55604 1.06361 1.65006 2.37747 2.86167 3.16824 3.43046 3.47174 3.48753 3.51154 4.14689 4.27102 4.51082 4.63076 4.71815 4.80768 4.84689 4.95437 5.04340 5.09219 5.14102 5.20265 5.36825 5.41972 5.52235 5.59455 5.66185 5.75270 5.85944 5.88943 5.94471 6.00042 6.05125 6.10420 6.12069 6.15810 6.21438 6.32261 6.36338 6.47052 6.54826 6.69496 6.73126 6.80691 7.04162 7.49697 7.55027 7.60683 7.80942 8.22611 8.26677 9.19216 9.82113 10.48702 11.40615 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002916 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.492988 B = 9599.909048 C =10499.505901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.114 4.114 13 H 0.078 0.922 14 C -0.118 4.118 15 C 0.099 3.901 16 N -0.600 5.600 17 C 0.582 3.418 18 O -0.530 6.530 19 C -0.214 4.214 20 C 0.054 3.946 21 O -0.184 6.184 22 C 0.047 3.953 23 C -0.107 4.107 24 C -0.094 4.094 25 C -0.133 4.133 26 C -0.060 4.060 27 C -0.094 4.094 28 C 0.118 3.882 29 C 0.156 3.844 30 H 0.024 0.976 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.219 0.781 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.094 0.906 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.781 -22.847 1.052 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.134 4.134 13 H 0.096 0.904 14 C -0.157 4.157 15 C -0.024 4.024 16 N -0.333 5.333 17 C 0.370 3.630 18 O -0.408 6.408 19 C -0.218 4.218 20 C -0.013 4.013 21 O -0.084 6.084 22 C 0.000 4.000 23 C -0.126 4.126 24 C -0.112 4.112 25 C -0.151 4.151 26 C -0.078 4.078 27 C -0.095 4.095 28 C -0.004 4.004 29 C 0.047 3.953 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.112 0.888 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.109 -22.363 0.960 23.808 hybrid contribution 0.266 1.082 0.043 1.115 sum 8.375 -21.282 1.003 22.892 Atomic orbital electron populations 1.69932 1.04896 1.25201 1.56905 1.24779 0.95677 0.97645 1.02096 0.86220 0.78488 0.83177 0.78048 1.21095 1.21626 1.21082 1.19002 0.90420 0.82272 1.44051 0.90311 1.44154 1.01645 0.99146 1.86708 1.21547 0.83658 0.88473 1.00998 1.22730 0.95972 0.99669 0.99260 1.22284 0.97505 0.93350 1.00231 0.90392 1.21783 0.95021 0.97516 1.01347 1.21987 0.89678 0.91687 0.99067 1.48172 1.13323 1.08106 1.63738 1.17195 0.81892 0.85979 0.77963 1.90811 1.50818 1.54036 1.45108 1.21044 1.07763 0.95439 0.97566 1.24545 0.96322 0.80928 0.99548 1.83848 1.58915 1.32243 1.33430 1.19580 0.99136 0.95611 0.85641 1.19921 1.00151 0.97890 0.94602 1.20946 0.98807 0.96964 0.94469 1.21110 1.00558 0.92873 1.00565 1.20687 0.94870 1.00252 0.92029 1.19447 1.01399 0.92357 0.96342 1.21757 0.99276 0.77808 1.01547 1.20970 0.90945 0.87662 0.95683 0.95898 0.93700 0.92594 0.94439 0.92203 0.92577 0.90728 0.91347 0.91496 0.90122 0.76505 0.84910 0.84640 0.85018 0.84799 0.88810 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.44 55.49 0.58 -26.38 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.35 9.88 -15.06 -0.15 -6.50 16 8 H 0.08 2.14 7.41 -52.48 -0.39 1.75 16 9 N -0.59 -14.85 3.35 -162.93 -0.55 -15.39 16 10 C 0.18 4.22 5.45 -1.91 -0.01 4.21 16 11 C -0.14 -2.47 6.54 -25.15 -0.16 -2.64 16 12 C -0.11 -1.88 2.61 -89.52 -0.23 -2.12 16 13 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 14 C -0.12 -1.49 5.72 -26.79 -0.15 -1.64 16 15 C 0.10 1.13 5.12 -3.51 -0.02 1.11 16 16 N -0.60 -9.24 3.02 -174.11 -0.53 -9.77 16 17 C 0.58 9.63 7.59 -12.67 -0.10 9.53 16 18 O -0.53 -10.86 16.48 5.24 0.09 -10.77 16 19 C -0.21 -2.88 5.36 -103.25 -0.55 -3.43 16 20 C 0.05 0.54 9.65 29.95 0.29 0.83 16 21 O -0.18 -1.97 10.53 5.35 0.06 -1.92 16 22 C 0.05 0.54 7.39 -38.56 -0.28 0.25 16 23 C -0.11 -0.96 10.06 -39.45 -0.40 -1.36 16 24 C -0.09 -0.75 10.01 -39.56 -0.40 -1.15 16 25 C -0.13 -1.25 10.04 -39.56 -0.40 -1.65 16 26 C -0.06 -0.75 10.09 -39.40 -0.40 -1.15 16 27 C -0.09 -1.25 6.39 -104.98 -0.67 -1.92 16 28 C 0.12 2.22 5.70 -3.96 -0.02 2.20 16 29 C 0.16 3.20 2.77 -67.85 -0.19 3.01 16 30 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 32 H 0.06 1.47 7.21 -51.93 -0.37 1.09 16 33 H 0.04 0.99 7.77 -51.93 -0.40 0.58 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.77 4.97 -51.92 -0.26 0.52 16 40 H 0.22 1.35 7.17 -52.49 -0.38 0.98 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 45 H 0.09 2.01 6.74 -51.93 -0.35 1.66 16 46 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -33.67 367.03 -10.12 -43.79 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.34 Total: 0.24 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.94 Total: -2.66 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.49 Total: -51.54 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.14 Total: -12.69 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.67 -10.12 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042379431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.397 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds