Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00102 * 2 1 4 4 H 1.48498 * 109.47268 * 240.00021 * 3 2 1 5 5 H 1.48499 * 109.46673 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47212 * 119.99803 * 3 2 1 7 7 C 1.38811 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.48153 * 126.39764 * 0.03975 * 9 7 2 11 11 C 1.55303 * 107.04732 * 184.97124 * 10 9 7 12 12 C 1.53699 * 101.81117 * 22.44298 * 11 10 9 13 13 H 1.08998 * 111.11155 * 78.60818 * 12 11 10 14 14 C 1.51984 * 114.99812 * 206.54902 * 12 11 10 15 15 C 1.53883 * 107.29170 * 175.43139 * 14 12 11 16 16 N 1.46631 * 110.79816 * 308.25431 * 15 14 12 17 17 C 1.34777 * 119.78517 * 227.68186 * 16 15 14 18 18 O 1.21646 * 120.00436 * 174.20225 * 17 16 15 19 19 C 1.47092 * 119.99607 * 354.20073 * 17 16 15 20 20 C 1.36049 * 127.14071 * 321.13152 * 19 17 16 21 21 O 1.33811 * 109.84808 * 179.88676 * 20 19 17 22 22 C 1.34900 * 111.34900 * 0.40334 * 21 20 19 23 23 C 1.38973 * 133.11589 * 179.78459 * 22 21 20 24 24 C 1.37845 * 119.97528 * 179.97438 * 23 22 21 25 25 C 1.38686 * 120.65443 * 359.97438 * 24 23 22 26 26 C 1.37846 * 120.19768 * 0.02562 * 25 24 23 27 27 C 1.39101 * 119.63289 * 359.95902 * 26 25 24 28 28 C 1.47799 * 120.46196 * 47.54206 * 16 15 14 29 29 C 1.45502 * 126.40001 * 180.02562 * 9 7 2 30 30 H 1.09005 * 109.56854 * 265.87419 * 29 9 7 31 31 H 0.96993 * 119.99555 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.92043 * 304.31601 * 10 9 7 33 33 H 1.09000 * 109.92264 * 65.62092 * 10 9 7 34 34 H 1.08996 * 110.96327 * 140.57373 * 11 10 9 35 35 H 1.09004 * 110.95538 * 264.31883 * 11 10 9 36 36 H 1.09004 * 109.89247 * 294.87807 * 14 12 11 37 37 H 1.09000 * 109.89262 * 55.97909 * 14 12 11 38 38 H 1.08993 * 109.23021 * 68.51257 * 15 14 12 39 39 H 1.09009 * 109.22447 * 187.91151 * 15 14 12 40 40 H 1.08000 * 125.07233 * 0.04578 * 20 19 17 41 41 H 1.08001 * 120.01068 * 359.97438 * 23 22 21 42 42 H 1.07996 * 119.67499 * 180.02562 * 24 23 22 43 43 H 1.07996 * 119.90254 * 179.97438 * 25 24 23 44 44 H 1.08007 * 120.18124 * 180.02562 * 26 25 24 45 45 H 1.09006 * 110.06369 * 189.66553 * 28 16 15 46 46 H 1.09006 * 110.06575 * 68.20965 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1466 -2.5532 -0.0008 11 6 -0.4343 -4.0738 0.1284 12 6 0.8677 -4.5875 0.7636 13 1 0.8901 -4.3820 1.8338 14 6 1.1973 -6.0411 0.4666 15 6 2.5767 -6.3325 1.0832 16 7 3.5613 -5.3355 0.6511 17 6 4.7656 -5.7366 0.1979 18 8 5.5452 -4.9226 -0.2598 19 6 5.1372 -7.1585 0.2569 20 6 4.8615 -8.0388 1.2569 21 8 5.3594 -9.2429 0.9523 22 6 5.9892 -9.2265 -0.2406 23 6 6.6560 -10.1990 -0.9761 24 6 7.2132 -9.8788 -2.1956 25 6 7.1159 -8.5911 -2.7012 26 6 6.4582 -7.6133 -1.9860 27 6 5.8919 -7.9253 -0.7545 28 6 3.2413 -3.8936 0.7060 29 6 1.9083 -3.7213 0.0016 30 1 1.9875 -4.0859 -1.0226 31 1 -0.4849 0.8400 -0.0004 32 1 -0.5809 -2.0199 0.8449 33 1 -0.5620 -2.1747 -0.9348 34 1 -1.2860 -4.2552 0.7840 35 1 -0.5948 -4.5249 -0.8509 36 1 0.4458 -6.6909 0.9152 37 1 1.2314 -6.2010 -0.6110 38 1 2.4966 -6.3079 2.1699 39 1 2.9079 -7.3227 0.7701 40 1 4.3193 -7.8018 2.1604 41 1 6.7377 -11.2052 -0.5923 42 1 7.7300 -10.6384 -2.7632 43 1 7.5573 -8.3535 -3.6578 44 1 6.3822 -6.6106 -2.3803 45 1 4.0127 -3.3195 0.1927 46 1 3.1608 -3.5676 1.7431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042379431.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = 15.774135 kcal Electronic energy + Delta-G solvation = -29704.353834 eV Core-core repulsion = 25753.551419 eV Total energy + Delta-G solvation = -3950.802416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.67201 -41.39847 -39.64481 -38.85988 -36.91532 -34.75344 -34.04753 -32.89629 -31.52889 -31.23020 -30.42549 -29.79496 -26.61663 -26.06208 -24.48572 -23.70967 -23.45153 -23.12230 -21.82909 -21.22546 -20.20471 -18.95702 -18.50956 -18.22152 -17.55313 -17.19858 -16.93890 -16.74647 -16.39475 -16.14606 -15.79732 -15.67721 -15.23163 -14.99269 -14.85899 -14.67258 -14.40621 -14.14563 -13.85887 -13.61966 -13.55623 -13.31185 -13.14357 -13.09989 -12.87239 -12.75195 -12.55880 -12.17256 -12.05148 -11.99107 -11.79201 -11.55769 -11.45084 -11.31930 -11.05556 -10.97449 -10.74747 -9.79342 -9.68861 -9.26162 -8.93541 -7.88747 -5.23799 -0.23674 0.28202 0.74075 1.41668 1.44502 1.50643 1.55755 1.71662 2.02595 2.47163 2.70804 3.29122 3.29492 3.40160 3.47850 3.76125 3.82804 3.88957 3.95524 3.99415 4.12847 4.24007 4.26284 4.29631 4.32499 4.38828 4.50426 4.52414 4.59660 4.68458 4.76481 4.80144 4.88316 4.89136 5.07889 5.09098 5.13160 5.19100 5.22213 5.33977 5.36366 5.46660 5.48402 5.56199 5.57628 5.64492 5.76514 6.03004 6.16769 6.30772 7.01745 7.05854 7.73955 8.40892 9.21982 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002916 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.492988 B = 9599.909048 C =10499.505901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.612 5.612 10 C 0.180 3.820 11 C -0.122 4.122 12 C -0.095 4.095 13 H 0.084 0.916 14 C -0.110 4.110 15 C 0.092 3.908 16 N -0.596 5.596 17 C 0.580 3.420 18 O -0.588 6.588 19 C -0.257 4.257 20 C 0.096 3.904 21 O -0.177 6.177 22 C 0.032 3.968 23 C -0.099 4.099 24 C -0.089 4.089 25 C -0.125 4.125 26 C -0.101 4.101 27 C -0.122 4.122 28 C 0.131 3.869 29 C 0.147 3.853 30 H 0.000 1.000 31 H 0.248 0.752 32 H 0.026 0.974 33 H -0.003 1.003 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.262 0.738 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.152 0.848 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -27.433 2.658 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.115 4.115 13 H 0.102 0.898 14 C -0.148 4.148 15 C -0.029 4.029 16 N -0.328 5.328 17 C 0.371 3.629 18 O -0.470 6.470 19 C -0.262 4.262 20 C 0.029 3.971 21 O -0.076 6.076 22 C -0.014 4.014 23 C -0.117 4.117 24 C -0.106 4.106 25 C -0.143 4.143 26 C -0.119 4.119 27 C -0.123 4.123 28 C 0.008 3.992 29 C 0.039 3.961 30 H 0.017 0.983 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.277 0.723 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.170 0.830 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.385 -27.020 2.577 28.408 hybrid contribution 0.234 2.442 -0.541 2.512 sum 8.619 -24.577 2.036 26.124 Atomic orbital electron populations 1.70136 1.06043 1.25380 1.58072 1.25548 0.96574 1.00666 1.02560 0.85261 0.77304 0.79333 0.78132 1.21028 1.21503 1.20124 1.19268 0.90572 0.83842 1.43220 0.90864 1.44422 1.02595 1.00243 1.86499 1.21372 0.82811 0.92612 0.97623 1.22607 0.97862 0.94773 1.00807 1.22220 0.94388 0.95224 0.99620 0.89752 1.21794 0.96825 0.94888 1.01330 1.22395 0.87838 0.91455 1.01201 1.48196 1.14047 1.07124 1.63461 1.17694 0.81463 0.87105 0.76681 1.90769 1.52618 1.55892 1.47712 1.20788 1.11240 0.94091 1.00062 1.25213 0.93409 0.79597 0.98929 1.83881 1.58533 1.32156 1.33038 1.19877 1.00207 0.95317 0.86029 1.20437 0.98275 0.98746 0.94243 1.21418 0.97994 0.96844 0.94360 1.21432 0.98973 0.93032 1.00863 1.20691 0.97835 1.00063 0.93302 1.19712 1.02154 0.93665 0.96812 1.21316 0.97026 0.80197 1.00692 1.21106 0.93326 0.86332 0.95337 0.98286 0.94276 0.95603 0.98471 0.89197 0.91604 0.86237 0.92455 0.87763 0.87507 0.72255 0.81650 0.80667 0.83046 0.87726 0.92778 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.97 10.44 21.65 0.23 -57.75 16 2 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 3 Si 0.97 47.68 29.55 68.60 2.03 49.71 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.24 -13.99 9.88 84.04 0.83 -13.16 16 8 H 0.07 4.23 7.41 -2.90 -0.02 4.21 16 9 N -0.61 -32.27 3.35 -669.40 -2.24 -34.51 16 10 C 0.18 8.95 5.45 86.85 0.47 9.42 16 11 C -0.12 -4.24 6.54 31.62 0.21 -4.04 16 12 C -0.09 -2.96 2.61 -10.08 -0.03 -2.99 16 13 H 0.08 2.59 8.13 -2.39 -0.02 2.57 16 14 C -0.11 -2.35 5.72 30.56 0.17 -2.17 16 15 C 0.09 1.75 5.12 86.65 0.44 2.19 16 16 N -0.60 -18.15 3.02 -823.01 -2.48 -20.63 16 17 C 0.58 19.84 7.59 86.57 0.66 20.50 16 18 O -0.59 -26.22 16.48 -4.18 -0.07 -26.28 16 19 C -0.26 -6.75 5.36 -18.97 -0.10 -6.86 16 20 C 0.10 1.59 9.65 67.31 0.65 2.24 16 21 O -0.18 -3.12 10.53 -3.78 -0.04 -3.16 16 22 C 0.03 0.65 7.39 22.93 0.17 0.82 16 23 C -0.10 -1.41 10.06 22.35 0.22 -1.19 16 24 C -0.09 -1.12 10.01 22.28 0.22 -0.90 16 25 C -0.13 -2.23 10.04 22.28 0.22 -2.01 16 26 C -0.10 -2.65 10.09 22.38 0.23 -2.42 16 27 C -0.12 -3.25 6.39 -20.10 -0.13 -3.37 16 28 C 0.13 5.14 5.70 85.72 0.49 5.63 16 29 C 0.15 6.20 2.77 45.58 0.13 6.33 16 30 H 0.00 -0.01 7.90 -2.38 -0.02 -0.03 16 31 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 32 H 0.03 1.41 7.21 -2.39 -0.02 1.40 16 33 H 0.00 -0.17 7.77 -2.39 -0.02 -0.19 16 34 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.07 2.16 8.12 -2.38 -0.02 2.14 16 36 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.39 7.97 -2.39 -0.02 1.37 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.55 4.97 -2.38 -0.01 1.54 16 40 H 0.26 1.72 7.17 -2.91 -0.02 1.70 16 41 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 45 H 0.05 2.53 6.74 -2.38 -0.02 2.51 16 46 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -83.39 367.03 3.74 -79.64 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.00 Total: 8.04 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.33 Total: 4.95 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.50 Total: -112.90 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.11 Total: -29.45 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -83.39 3.74 -79.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042379431.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.419 kcal (2) G-P(sol) polarization free energy of solvation -83.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds