Wall clock time and date at job start Sat Apr 11 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99844 * 2 1 4 4 H 1.48492 * 109.47460 * 94.99798 * 3 2 1 5 5 H 1.48500 * 109.46583 * 215.00177 * 3 2 1 6 6 H 1.48500 * 109.46724 * 334.99438 * 3 2 1 7 7 C 1.38804 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00057 * 175.19363 * 7 2 1 9 9 N 1.36942 * 120.00116 * 355.20601 * 7 2 1 10 10 C 1.46829 * 125.37610 * 185.86525 * 9 7 2 11 11 C 1.53898 * 107.49415 * 181.00353 * 10 9 7 12 12 H 1.09002 * 109.09383 * 260.22471 * 11 10 9 13 13 C 1.50776 * 110.58587 * 140.15864 * 11 10 9 14 14 C 1.51320 * 113.46669 * 289.13005 * 13 11 10 15 15 C 1.51616 * 112.05320 * 304.71192 * 14 13 11 16 16 N 1.44501 * 112.73212 * 42.34541 * 15 14 13 17 17 C 1.34784 * 116.64825 * 154.48349 * 16 15 14 18 18 O 1.21657 * 119.99939 * 175.91255 * 17 16 15 19 19 C 1.46975 * 120.00046 * 355.91320 * 17 16 15 20 20 C 1.35811 * 125.13193 * 187.71382 * 19 17 16 21 21 C 1.46247 * 106.08092 * 179.97438 * 20 19 17 22 22 C 1.39697 * 134.19211 * 180.02562 * 21 20 19 23 23 C 1.36619 * 119.71128 * 179.97438 * 22 21 20 24 24 C 1.38841 * 120.44502 * 0.02562 * 23 22 21 25 25 C 1.37799 * 120.74254 * 0.02562 * 24 23 22 26 26 C 1.39025 * 119.85258 * 359.97438 * 25 24 23 27 27 O 1.34720 * 133.24016 * 180.34608 * 26 25 24 28 28 C 1.44108 * 126.70323 * 334.45781 * 16 15 14 29 29 H 1.09004 * 109.49242 * 254.13695 * 28 16 15 30 30 C 1.46900 * 125.37297 * 5.55591 * 9 7 2 31 31 H 0.97007 * 120.00245 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.84434 * 300.48890 * 10 9 7 33 33 H 1.09001 * 109.84555 * 61.52404 * 10 9 7 34 34 H 1.09009 * 108.68206 * 50.15821 * 13 11 10 35 35 H 1.08996 * 108.68700 * 168.09590 * 13 11 10 36 36 H 1.09002 * 108.96960 * 65.37578 * 14 13 11 37 37 H 1.09004 * 108.96331 * 184.14032 * 14 13 11 38 38 H 1.09003 * 108.82808 * 163.17885 * 15 14 13 39 39 H 1.09001 * 108.83007 * 281.50345 * 15 14 13 40 40 H 1.07997 * 126.95900 * 0.02562 * 20 19 17 41 41 H 1.08004 * 120.14568 * 359.97438 * 22 21 20 42 42 H 1.08007 * 119.78021 * 180.02562 * 23 22 21 43 43 H 1.08001 * 119.63060 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.06979 * 179.97438 * 25 24 23 45 45 H 1.09003 * 110.08664 * 281.32071 * 30 9 7 46 46 H 1.08995 * 110.09200 * 42.90140 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6033 1.9856 1.3946 5 1 3.4909 1.4730 -0.8031 6 1 1.3987 2.6809 -0.5918 7 6 2.0102 -1.2021 0.0005 8 1 3.0874 -1.2037 -0.0778 9 7 1.3292 -2.3859 0.1002 10 6 1.9449 -3.7121 0.2344 11 6 0.8072 -4.7472 0.2868 12 1 0.6285 -5.0284 1.3247 13 6 1.1735 -5.9780 -0.5033 14 6 1.1879 -5.7514 -1.9994 15 6 -0.1305 -5.1982 -2.5041 16 7 -0.6719 -4.1723 -1.6426 17 6 -1.4973 -3.2745 -2.2165 18 8 -2.0463 -2.4298 -1.5344 19 6 -1.7342 -3.3160 -3.6665 20 6 -2.4209 -2.3814 -4.3732 21 6 -2.4022 -2.8312 -5.7646 22 6 -2.9201 -2.3243 -6.9590 23 6 -2.7219 -3.0059 -8.1262 24 6 -2.0102 -4.1981 -8.1326 25 6 -1.4921 -4.7154 -6.9653 26 6 -1.6809 -4.0396 -5.7651 27 8 -1.2993 -4.2867 -4.4969 28 6 -0.4207 -4.0104 -0.2328 29 1 -1.2989 -4.3244 0.3315 30 6 -0.1328 -2.5289 0.0960 31 1 -0.4851 0.8401 -0.0004 32 1 2.5866 -3.9107 -0.6238 33 1 2.5290 -3.7576 1.1536 34 1 2.1632 -6.3117 -0.1911 35 1 0.4548 -6.7654 -0.2763 36 1 1.9839 -5.0480 -2.2436 37 1 1.3874 -6.6993 -2.4993 38 1 0.0218 -4.7784 -3.4984 39 1 -0.8501 -6.0138 -2.5753 40 1 -2.8858 -1.4867 -3.9862 41 1 -3.4748 -1.3976 -6.9595 42 1 -3.1214 -2.6149 -9.0503 43 1 -1.8610 -4.7259 -9.0630 44 1 -0.9406 -5.6438 -6.9827 45 1 -0.5366 -2.2753 1.0763 46 1 -0.5698 -1.8852 -0.6673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050196844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:49 Heat of formation + Delta-G solvation = 33.666365 kcal Electronic energy + Delta-G solvation = -30643.842058 eV Core-core repulsion = 26693.815508 eV Total energy + Delta-G solvation = -3950.026550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.66629 -41.84949 -39.30985 -38.78773 -37.06617 -34.80800 -33.91994 -33.76595 -31.75643 -31.31468 -30.60444 -28.81965 -27.39656 -26.08235 -25.08930 -23.63156 -23.36824 -22.81808 -22.30921 -21.18568 -19.41554 -19.20059 -18.62390 -18.43423 -17.71441 -17.41264 -16.99955 -16.78375 -16.20307 -15.87164 -15.73042 -15.66520 -15.23231 -15.16903 -14.93359 -14.47778 -14.19310 -14.09049 -13.89646 -13.80723 -13.63546 -13.27678 -13.11493 -13.02237 -12.86490 -12.71638 -12.47131 -12.14057 -12.05504 -11.95627 -11.76675 -11.59577 -11.50975 -11.36218 -11.26068 -10.88423 -10.57986 -9.64890 -9.59614 -9.23121 -8.82614 -7.76004 -5.20235 -0.45906 0.37203 0.81893 1.32837 1.40223 1.44020 1.51851 1.93053 2.14581 2.47784 2.74366 3.19117 3.33184 3.57086 3.62523 3.66667 3.84603 3.91420 3.95937 3.99724 4.00336 4.05839 4.17534 4.32577 4.44449 4.53118 4.56404 4.60328 4.62059 4.71189 4.80219 4.86239 4.89091 4.96945 5.08682 5.14397 5.16228 5.29633 5.30794 5.38475 5.41258 5.43230 5.46995 5.49383 5.57209 5.73527 5.96618 6.04858 6.25285 6.47210 7.00096 7.10491 7.81362 8.43919 9.25663 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.004221 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.165787 B = 6632.668151 C = 8202.980023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.624 5.624 10 C 0.134 3.866 11 C -0.087 4.087 12 H 0.094 0.906 13 C -0.098 4.098 14 C -0.121 4.121 15 C 0.099 3.901 16 N -0.570 5.570 17 C 0.567 3.433 18 O -0.528 6.528 19 C -0.034 4.034 20 C -0.128 4.128 21 C -0.164 4.164 22 C -0.075 4.075 23 C -0.133 4.133 24 C -0.074 4.074 25 C -0.116 4.116 26 C 0.035 3.965 27 O -0.173 6.173 28 C 0.137 3.863 29 H 0.067 0.933 30 C 0.141 3.859 31 H 0.243 0.757 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.159 0.841 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.177 0.823 44 H 0.159 0.841 45 H -0.020 1.020 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.170 -16.644 -16.905 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.210 1.210 5 H -0.193 1.193 6 H -0.223 1.223 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.350 5.350 10 C 0.009 3.991 11 C -0.107 4.107 12 H 0.113 0.887 13 C -0.136 4.136 14 C -0.159 4.159 15 C -0.022 4.022 16 N -0.300 5.300 17 C 0.355 3.645 18 O -0.407 6.407 19 C -0.084 4.084 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.093 4.093 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.135 4.135 26 C -0.013 4.013 27 O -0.076 6.076 28 C 0.032 3.968 29 H 0.084 0.916 30 C 0.016 3.984 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.177 0.823 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.194 0.806 44 H 0.176 0.824 45 H -0.002 1.002 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.271 -16.313 -16.402 23.363 hybrid contribution 0.137 1.830 0.870 2.031 sum -3.134 -14.483 -15.531 21.466 Atomic orbital electron populations 1.70257 1.06176 1.24812 1.57272 1.25721 0.96536 1.01090 1.02536 0.85140 0.77526 0.79189 0.77751 1.20950 1.19306 1.22291 1.19373 0.91153 0.83888 1.43327 0.90191 1.44627 1.02337 1.02057 1.86011 1.21537 0.94997 0.84747 0.97807 1.21311 0.92524 0.95592 1.01228 0.88749 1.20566 1.03842 0.95245 0.93918 1.21154 0.95212 1.02627 0.96873 1.21482 0.97234 0.90296 0.93192 1.46618 1.45200 1.28865 1.09337 1.17416 0.80976 0.81832 0.84309 1.90898 1.50513 1.37440 1.61865 1.21794 1.03975 0.92010 0.90591 1.22889 1.00051 0.99812 0.92110 1.20111 1.05017 0.97434 0.93889 1.20713 0.98039 1.00445 0.90113 1.21255 0.99810 0.95685 0.98328 1.21550 0.94429 0.95325 0.97873 1.20443 1.04065 1.01841 0.87112 1.20576 0.98594 0.96552 0.85533 1.84391 1.63665 1.43685 1.15819 1.21072 0.98058 0.97778 0.79863 0.91557 1.22062 0.84118 0.93183 0.99063 0.94755 0.95355 0.95719 0.89084 0.89606 0.93290 0.86442 0.89275 0.90153 0.82314 0.84072 0.81804 0.80598 0.82374 1.00166 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.43 10.27 21.65 0.22 -61.20 16 2 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 3 Si 0.98 48.80 29.56 68.60 2.03 50.83 16 4 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 7 C -0.25 -14.92 10.24 84.03 0.86 -14.06 16 8 H 0.08 4.57 7.83 -2.91 -0.02 4.55 16 9 N -0.62 -34.63 3.39 -695.55 -2.36 -36.99 16 10 C 0.13 5.71 6.74 86.62 0.58 6.29 16 11 C -0.09 -2.96 2.96 -11.43 -0.03 -2.99 16 12 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 13 C -0.10 -2.29 5.10 29.32 0.15 -2.14 16 14 C -0.12 -2.84 5.84 29.59 0.17 -2.66 16 15 C 0.10 2.82 5.23 86.30 0.45 3.28 16 16 N -0.57 -22.03 3.09 -813.66 -2.51 -24.54 16 17 C 0.57 24.98 6.94 86.53 0.60 25.58 16 18 O -0.53 -27.94 13.85 -4.21 -0.06 -28.00 16 19 C -0.03 -1.29 6.64 24.00 0.16 -1.13 16 20 C -0.13 -4.53 10.81 23.79 0.26 -4.27 16 21 C -0.16 -4.70 6.38 -20.23 -0.13 -4.83 16 22 C -0.08 -1.59 10.06 22.24 0.22 -1.36 16 23 C -0.13 -1.92 9.98 22.04 0.22 -1.70 16 24 C -0.07 -0.95 10.01 22.31 0.22 -0.73 16 25 C -0.12 -2.09 10.07 22.35 0.23 -1.86 16 26 C 0.03 0.94 7.41 23.07 0.17 1.11 16 27 O -0.17 -5.36 6.82 -13.02 -0.09 -5.45 16 28 C 0.14 5.72 3.22 45.71 0.15 5.87 16 29 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 30 C 0.14 7.83 4.55 86.80 0.40 8.23 16 31 H 0.24 15.64 8.31 -92.70 -0.77 14.87 16 32 H 0.03 1.18 6.70 -2.39 -0.02 1.16 16 33 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.78 8.10 -2.38 -0.02 1.76 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.37 7.10 -2.39 -0.02 1.35 16 37 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.09 2.69 4.68 -23.45 -0.11 2.58 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 40 H 0.16 5.71 8.06 -2.91 -0.02 5.68 16 41 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 43 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 45 H -0.02 -1.22 8.12 -2.39 -0.02 -1.24 16 46 H 0.10 6.49 3.23 -3.26 -0.01 6.48 16 Total: -1.00 -83.28 359.19 3.28 -80.00 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.90 Total: 16.26 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.14 Total: 9.09 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -4.65 Total: -122.74 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.15 Total: -33.44 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -83.28 3.28 -80.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050196844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.670 kcal (2) G-P(sol) polarization free energy of solvation -83.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds