Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86805 * 119.99615 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99680 * 3 2 1 5 5 H 1.48498 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46983 * 119.99869 * 3 2 1 7 7 C 1.38796 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00311 * 179.97438 * 9 7 2 11 11 C 1.50690 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00628 * 359.72600 * 11 10 9 13 13 N 1.34783 * 119.99691 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99707 * 179.72803 * 13 11 10 15 15 C 1.53002 * 109.46679 * 185.30118 * 14 13 11 16 16 H 1.08999 * 109.58467 * 298.48689 * 15 14 13 17 17 C 1.53192 * 109.59141 * 58.77524 * 15 14 13 18 18 C 1.53069 * 109.29498 * 174.27938 * 17 15 14 19 19 C 1.53038 * 109.66074 * 298.84316 * 18 17 15 20 20 C 1.53201 * 109.31007 * 61.30405 * 19 18 17 21 21 N 1.46920 * 108.77255 * 305.36569 * 20 19 18 22 22 C 1.34783 * 120.63066 * 233.58364 * 21 20 19 23 23 O 1.21278 * 120.00239 * 185.39155 * 22 21 20 24 24 C 1.50703 * 119.99689 * 5.39698 * 22 21 20 25 25 C 1.52996 * 109.47070 * 179.97438 * 24 22 21 26 26 C 1.53000 * 117.49903 * 243.62011 * 25 24 22 27 27 C 1.52999 * 60.00071 * 252.51216 * 26 25 24 28 28 H 0.96995 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46629 * 59.99848 * 10 9 7 30 30 H 1.09000 * 109.46705 * 300.00426 * 10 9 7 31 31 H 0.96998 * 119.99895 * 359.72310 * 13 11 10 32 32 H 1.09004 * 109.47258 * 305.29593 * 14 13 11 33 33 H 1.08998 * 109.47516 * 65.30158 * 14 13 11 34 34 H 1.08996 * 109.49752 * 294.37580 * 17 15 14 35 35 H 1.09000 * 109.49508 * 54.46754 * 17 15 14 36 36 H 1.09009 * 109.44953 * 178.75643 * 18 17 15 37 37 H 1.08996 * 109.33552 * 58.86931 * 18 17 15 38 38 H 1.08995 * 109.50316 * 301.35355 * 19 18 17 39 39 H 1.09003 * 109.49800 * 181.25269 * 19 18 17 40 40 H 1.09002 * 109.58687 * 185.57713 * 20 19 18 41 41 H 1.08997 * 109.69789 * 65.22200 * 20 19 18 42 42 H 1.09001 * 109.47004 * 300.00067 * 24 22 21 43 43 H 1.09002 * 109.47091 * 59.99428 * 24 22 21 44 44 H 1.08994 * 115.55063 * 29.33044 * 25 24 22 45 45 H 1.08997 * 117.49798 * 0.02562 * 26 25 24 46 46 H 1.08999 * 117.50064 * 145.02258 * 26 25 24 47 47 H 1.08996 * 117.49758 * 252.51227 * 27 26 25 48 48 H 1.08998 * 117.50160 * 107.49136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6966 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3026 0.0012 12 8 0.7915 -5.5023 0.0066 13 7 2.8445 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0074 15 6 3.4977 -8.6957 0.1387 16 1 4.1648 -8.5866 -0.7164 17 6 4.2681 -8.4075 1.4311 18 6 5.3438 -9.4785 1.6284 19 6 4.6843 -10.8539 1.7521 20 6 3.9209 -11.1677 0.4614 21 7 2.9823 -10.0707 0.1887 22 6 1.6732 -10.3210 -0.0122 23 8 0.9260 -9.4212 -0.3326 24 6 1.1381 -11.7191 0.1614 25 6 -0.3651 -11.7289 -0.1234 26 6 -1.3005 -12.0942 1.0309 27 6 -1.0769 -13.0832 -0.1149 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7312 0.8906 30 1 3.1247 -3.7312 -0.8894 31 1 3.8013 -6.1833 -0.0040 32 1 1.6510 -7.8443 0.8496 33 1 1.7972 -7.9077 -0.9233 34 1 4.7368 -7.4258 1.3640 35 1 3.5801 -8.4255 2.2764 36 1 5.9080 -9.2633 2.5359 37 1 6.0181 -9.4746 0.7721 38 1 3.9911 -10.8508 2.5931 39 1 5.4509 -11.6116 1.9146 40 1 3.3688 -12.0999 0.5809 41 1 4.6230 -11.2623 -0.3669 42 1 1.6442 -12.3906 -0.5323 43 1 1.3160 -12.0519 1.1840 44 1 -0.7132 -10.9819 -0.8367 45 1 -0.8450 -12.3271 1.9933 46 1 -2.2643 -11.5873 1.0773 47 1 -1.8936 -13.2269 -0.8222 48 1 -0.4743 -13.9672 0.0937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001061962838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -43.223814 kcal Electronic energy + Delta-G solvation = -27316.686400 eV Core-core repulsion = 23498.769592 eV Total energy + Delta-G solvation = -3817.916807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00284 -38.90138 -38.09935 -37.07166 -34.81370 -33.28611 -32.37326 -31.83644 -29.67124 -29.23747 -26.42898 -25.40988 -24.85261 -22.72895 -22.63618 -21.62926 -20.56882 -20.30629 -19.18540 -17.87946 -17.36887 -16.66970 -16.09686 -15.92237 -15.65935 -15.18344 -14.92581 -14.79217 -14.74697 -14.54700 -14.28305 -14.08988 -13.85969 -13.63297 -13.42370 -13.02838 -12.72180 -12.59947 -12.48826 -12.32743 -11.79712 -11.78961 -11.67950 -11.39364 -11.34375 -11.14908 -11.03723 -10.99773 -10.97704 -10.71919 -10.61438 -10.28992 -9.76642 -9.57455 -9.14390 -9.00967 -8.98005 -8.54367 -8.15215 -6.42639 -6.15685 -3.85648 2.37215 2.49743 3.17570 3.26672 3.29625 3.31416 3.39386 3.51809 3.88548 4.10928 4.26059 4.26527 4.36306 4.39326 4.44314 4.59083 4.61992 4.78725 4.82608 4.83669 5.01380 5.05994 5.10450 5.18368 5.18841 5.26071 5.28654 5.31636 5.35504 5.42906 5.48554 5.62295 5.63747 5.65108 5.74560 5.84277 5.87639 5.97301 6.01252 6.07050 6.11618 6.22109 6.45628 6.78289 7.08600 7.64460 7.87682 7.96966 8.40566 8.81557 9.29031 10.91678 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.002279 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.546781 B =12282.222810 C =13823.700604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.071 0.929 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.512 6.512 13 N -0.744 5.744 14 C 0.128 3.872 15 C 0.137 3.863 16 H 0.077 0.923 17 C -0.134 4.134 18 C -0.120 4.120 19 C -0.137 4.137 20 C 0.108 3.892 21 N -0.611 5.611 22 C 0.511 3.489 23 O -0.512 6.512 24 C -0.107 4.107 25 C -0.143 4.143 26 C -0.177 4.177 27 C -0.181 4.181 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.390 0.610 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -30.478 2.455 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.385 6.385 13 N -0.401 5.401 14 C 0.005 3.995 15 C 0.034 3.966 16 H 0.095 0.905 17 C -0.172 4.172 18 C -0.158 4.158 19 C -0.175 4.175 20 C -0.014 4.014 21 N -0.347 5.347 22 C 0.299 3.701 23 O -0.386 6.386 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.214 4.214 27 C -0.218 4.218 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.973 -30.246 2.281 31.632 hybrid contribution 2.664 1.254 0.132 2.947 sum 11.637 -28.992 2.413 31.333 Atomic orbital electron populations 1.70016 1.05934 1.27485 1.46877 1.24994 0.95022 0.98985 0.94641 0.86232 0.79224 0.81322 0.78745 1.19969 1.20842 1.19985 1.22835 0.94862 0.91779 1.58872 0.91040 1.85435 1.05047 0.96176 1.96683 1.23530 1.06412 0.95652 1.04700 1.20205 0.86589 0.86059 0.75558 1.90722 1.15309 1.85491 1.47025 1.46257 1.09533 1.06184 1.78164 1.22033 0.93363 0.78840 1.05258 1.21472 0.95913 0.81221 0.98044 0.90522 1.22037 0.98064 0.99356 0.97768 1.21521 0.97648 0.94235 1.02347 1.21936 0.99922 0.97913 0.97726 1.21766 0.92483 0.89547 0.97648 1.48122 1.07574 1.07084 1.71918 1.20719 0.81360 0.91302 0.76696 1.90830 1.56910 1.45376 1.45492 1.21261 0.95457 0.94524 1.03474 1.22092 0.91615 0.99319 1.03104 1.23030 1.01584 1.03261 0.93504 1.22990 1.03369 0.93149 1.02275 0.92175 0.89422 0.89394 0.77623 0.90779 0.88647 0.90303 0.91065 0.91361 0.91639 0.91304 0.90567 0.89528 0.91065 0.88669 0.88903 0.86146 0.88940 0.88550 0.88638 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -15.65 9.50 30.94 0.29 -15.36 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.15 -3.24 6.16 36.00 0.22 -3.02 16 11 C 0.53 10.84 7.85 -10.99 -0.09 10.75 16 12 O -0.51 -12.89 15.86 5.56 0.09 -12.81 16 13 N -0.74 -11.11 5.22 -60.29 -0.31 -11.43 16 14 C 0.13 1.85 3.56 -4.04 -0.01 1.84 16 15 C 0.14 1.32 3.06 -67.60 -0.21 1.11 16 16 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 17 C -0.13 -1.07 5.11 -26.60 -0.14 -1.21 16 18 C -0.12 -0.67 5.88 -26.68 -0.16 -0.82 16 19 C -0.14 -0.62 6.09 -26.61 -0.16 -0.78 16 20 C 0.11 0.52 6.35 -3.71 -0.02 0.50 16 21 N -0.61 -5.18 2.97 -165.21 -0.49 -5.67 16 22 C 0.51 5.42 7.53 -10.98 -0.08 5.34 16 23 O -0.51 -7.84 11.11 5.56 0.06 -7.78 16 24 C -0.11 -0.77 4.34 -27.88 -0.12 -0.89 16 25 C -0.14 -1.27 5.41 -90.62 -0.49 -1.76 16 26 C -0.18 -1.45 10.18 -26.73 -0.27 -1.72 16 27 C -0.18 -1.25 10.25 -26.73 -0.27 -1.52 16 28 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.39 4.42 7.47 -40.82 -0.31 4.11 16 32 H 0.07 1.29 7.23 -51.93 -0.38 0.91 16 33 H 0.10 1.66 6.24 -51.93 -0.32 1.33 16 34 H 0.08 0.60 7.09 -51.93 -0.37 0.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.26 5.93 -51.93 -0.31 -0.05 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.10 0.47 7.72 -51.93 -0.40 0.07 16 43 H 0.09 0.51 7.64 -51.93 -0.40 0.12 16 44 H 0.12 1.38 7.30 -51.93 -0.38 1.00 16 45 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 395.05 15.07 5.95 5.95 Total: -1.00 -37.70 395.05 -10.70 -48.40 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.89 Total: 2.03 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.61 Total: -5.51 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.07 Total: -43.18 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.15 Total: -20.59 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.70 -10.70 -48.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061962838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.177 kcal (2) G-P(sol) polarization free energy of solvation -37.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds