Wall clock time and date at job start Sat Apr 11 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86805 * 119.99615 * 2 1 4 4 H 1.48498 * 109.47212 * 239.99680 * 3 2 1 5 5 H 1.48498 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46983 * 119.99869 * 3 2 1 7 7 C 1.38796 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99819 * 180.02562 * 7 2 1 9 9 S 1.76193 * 120.00238 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00311 * 179.97438 * 9 7 2 11 11 C 1.50690 * 109.47056 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00628 * 359.72600 * 11 10 9 13 13 N 1.34783 * 119.99691 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99707 * 179.72803 * 13 11 10 15 15 C 1.53002 * 109.46679 * 185.30118 * 14 13 11 16 16 H 1.08999 * 109.58467 * 298.48689 * 15 14 13 17 17 C 1.53192 * 109.59141 * 58.77524 * 15 14 13 18 18 C 1.53069 * 109.29498 * 174.27938 * 17 15 14 19 19 C 1.53038 * 109.66074 * 298.84316 * 18 17 15 20 20 C 1.53201 * 109.31007 * 61.30405 * 19 18 17 21 21 N 1.46920 * 108.77255 * 305.36569 * 20 19 18 22 22 C 1.34783 * 120.63066 * 233.58364 * 21 20 19 23 23 O 1.21278 * 120.00239 * 185.39155 * 22 21 20 24 24 C 1.50703 * 119.99689 * 5.39698 * 22 21 20 25 25 C 1.52996 * 109.47070 * 179.97438 * 24 22 21 26 26 C 1.53000 * 117.49903 * 243.62011 * 25 24 22 27 27 C 1.52999 * 60.00071 * 252.51216 * 26 25 24 28 28 H 0.96995 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46629 * 59.99848 * 10 9 7 30 30 H 1.09000 * 109.46705 * 300.00426 * 10 9 7 31 31 H 0.96998 * 119.99895 * 359.72310 * 13 11 10 32 32 H 1.09004 * 109.47258 * 305.29593 * 14 13 11 33 33 H 1.08998 * 109.47516 * 65.30158 * 14 13 11 34 34 H 1.08996 * 109.49752 * 294.37580 * 17 15 14 35 35 H 1.09000 * 109.49508 * 54.46754 * 17 15 14 36 36 H 1.09009 * 109.44953 * 178.75643 * 18 17 15 37 37 H 1.08996 * 109.33552 * 58.86931 * 18 17 15 38 38 H 1.08995 * 109.50316 * 301.35355 * 19 18 17 39 39 H 1.09003 * 109.49800 * 181.25269 * 19 18 17 40 40 H 1.09002 * 109.58687 * 185.57713 * 20 19 18 41 41 H 1.08997 * 109.69789 * 65.22200 * 20 19 18 42 42 H 1.09001 * 109.47004 * 300.00067 * 24 22 21 43 43 H 1.09002 * 109.47091 * 59.99428 * 24 22 21 44 44 H 1.08994 * 115.55063 * 29.33044 * 25 24 22 45 45 H 1.08997 * 117.49798 * 0.02562 * 26 25 24 46 46 H 1.08999 * 117.50064 * 145.02258 * 26 25 24 47 47 H 1.08996 * 117.49758 * 252.51227 * 27 26 25 48 48 H 1.08998 * 117.50160 * 107.49136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6966 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3026 0.0012 12 8 0.7915 -5.5023 0.0066 13 7 2.8445 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0074 15 6 3.4977 -8.6957 0.1387 16 1 4.1648 -8.5866 -0.7164 17 6 4.2681 -8.4075 1.4311 18 6 5.3438 -9.4785 1.6284 19 6 4.6843 -10.8539 1.7521 20 6 3.9209 -11.1677 0.4614 21 7 2.9823 -10.0707 0.1887 22 6 1.6732 -10.3210 -0.0122 23 8 0.9260 -9.4212 -0.3326 24 6 1.1381 -11.7191 0.1614 25 6 -0.3651 -11.7289 -0.1234 26 6 -1.3005 -12.0942 1.0309 27 6 -1.0769 -13.0832 -0.1149 28 1 -0.4850 0.8400 -0.0004 29 1 3.1247 -3.7312 0.8906 30 1 3.1247 -3.7312 -0.8894 31 1 3.8013 -6.1833 -0.0040 32 1 1.6510 -7.8443 0.8496 33 1 1.7972 -7.9077 -0.9233 34 1 4.7368 -7.4258 1.3640 35 1 3.5801 -8.4255 2.2764 36 1 5.9080 -9.2633 2.5359 37 1 6.0181 -9.4746 0.7721 38 1 3.9911 -10.8508 2.5931 39 1 5.4509 -11.6116 1.9146 40 1 3.3688 -12.0999 0.5809 41 1 4.6230 -11.2623 -0.3669 42 1 1.6442 -12.3906 -0.5323 43 1 1.3160 -12.0519 1.1840 44 1 -0.7132 -10.9819 -0.8367 45 1 -0.8450 -12.3271 1.9933 46 1 -2.2643 -11.5873 1.0773 47 1 -1.8936 -13.2269 -0.8222 48 1 -0.4743 -13.9672 0.0937 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001061962838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:31 Heat of formation + Delta-G solvation = -69.241162 kcal Electronic energy + Delta-G solvation = -27317.814597 eV Core-core repulsion = 23498.769592 eV Total energy + Delta-G solvation = -3819.045004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81776 -40.44584 -38.83430 -37.78126 -36.09448 -34.59136 -33.94846 -32.89149 -30.76697 -30.25604 -27.79245 -27.24660 -25.53256 -23.52917 -23.23600 -22.26800 -21.81393 -21.21274 -20.06917 -19.73355 -18.35188 -17.85940 -17.30753 -16.97864 -16.88393 -16.58903 -16.41911 -16.11849 -15.53135 -15.31908 -15.24438 -15.01529 -14.78676 -14.68413 -14.49098 -14.33314 -14.05632 -13.81810 -13.42184 -13.24756 -13.17887 -12.90521 -12.84502 -12.63387 -12.41424 -12.33333 -12.16620 -11.95116 -11.76369 -11.64364 -11.51030 -11.26845 -11.13346 -11.03730 -10.89988 -10.43284 -10.28417 -10.01485 -9.58926 -8.69049 -8.34619 -6.14070 1.24463 1.43977 1.44740 1.54573 1.58866 1.63942 1.82772 2.26985 2.40635 2.90289 2.99006 3.32033 3.40980 3.67224 3.73146 3.80325 3.89009 3.98877 4.02521 4.09160 4.16117 4.17209 4.26123 4.28087 4.44811 4.47204 4.53847 4.61865 4.66422 4.71516 4.77179 4.78833 4.88576 4.95575 5.01892 5.03670 5.08613 5.17621 5.23933 5.25425 5.34803 5.38518 5.40690 5.47222 5.59633 6.19219 6.38752 6.50519 7.05642 7.18105 7.28627 8.74648 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015470 B = 0.002279 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.546781 B =12282.222810 C =13823.700604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.159 6.159 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.569 6.569 13 N -0.714 5.714 14 C 0.140 3.860 15 C 0.143 3.857 16 H 0.097 0.903 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.134 4.134 20 C 0.102 3.898 21 N -0.608 5.608 22 C 0.500 3.500 23 O -0.573 6.573 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.190 4.190 27 C -0.156 4.156 28 H 0.271 0.729 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.413 0.587 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.127 0.873 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.968 -32.523 2.853 36.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.069 5.931 10 C -0.276 4.276 11 C 0.315 3.685 12 O -0.447 6.447 13 N -0.371 5.371 14 C 0.017 3.983 15 C 0.039 3.961 16 H 0.115 0.885 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.019 4.019 21 N -0.342 5.342 22 C 0.290 3.710 23 O -0.452 6.452 24 C -0.134 4.134 25 C -0.183 4.183 26 C -0.227 4.227 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.250 0.750 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.135 0.865 44 H 0.100 0.900 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.113 0.887 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.449 -32.359 2.690 35.146 hybrid contribution 1.317 1.770 0.006 2.206 sum 14.766 -30.589 2.696 34.074 Atomic orbital electron populations 1.70199 1.08103 1.28695 1.47969 1.26204 0.96005 1.03514 0.93703 0.84953 0.77739 0.75377 0.79585 1.18518 1.20426 1.18488 1.23171 0.95385 0.91762 1.58976 0.89680 1.85707 1.10875 0.99499 1.97066 1.23349 1.03419 0.93876 1.06938 1.20161 0.86218 0.86823 0.75254 1.90711 1.17825 1.86161 1.50012 1.45958 1.10119 1.05462 1.75577 1.21825 0.94940 0.79316 1.02249 1.21387 0.93859 0.80923 0.99920 0.88535 1.22021 0.98278 1.00946 0.95698 1.21525 0.96813 0.93743 1.03302 1.21945 1.00260 0.97963 0.97040 1.22139 0.92324 0.88912 0.98523 1.48272 1.07623 1.07495 1.70780 1.21455 0.81645 0.92218 0.75705 1.90828 1.58555 1.47414 1.48432 1.21277 0.93944 0.92581 1.05629 1.22031 0.93230 1.00079 1.02958 1.23107 1.00925 1.04215 0.94471 1.23076 1.02765 0.92815 1.00671 0.92000 0.86921 0.87000 0.74962 0.94284 0.91697 0.89822 0.93219 0.90717 0.90182 0.92340 0.87917 0.87113 0.89195 0.85519 0.86473 0.90031 0.87494 0.90216 0.88733 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.92 13.22 21.65 0.29 -57.64 16 2 C 0.01 0.60 5.49 84.86 0.47 1.06 16 3 Si 1.00 44.55 29.55 68.60 2.03 46.57 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.55 -32.10 9.50 67.95 0.65 -31.45 16 8 H 0.09 4.60 7.80 -2.91 -0.02 4.57 16 9 S -0.16 -9.31 20.57 -56.49 -1.16 -10.47 16 10 C -0.12 -5.29 6.16 71.23 0.44 -4.85 16 11 C 0.53 22.29 7.85 87.65 0.69 22.98 16 12 O -0.57 -30.58 15.86 -3.02 -0.05 -30.63 16 13 N -0.71 -21.42 5.22 -463.06 -2.42 -23.84 16 14 C 0.14 4.26 3.56 86.38 0.31 4.56 16 15 C 0.14 2.60 3.06 44.97 0.14 2.74 16 16 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 17 C -0.13 -1.87 5.11 30.68 0.16 -1.71 16 18 C -0.12 -0.89 5.88 30.63 0.18 -0.71 16 19 C -0.13 -0.69 6.09 30.67 0.19 -0.50 16 20 C 0.10 0.58 6.35 86.37 0.55 1.13 16 21 N -0.61 -9.42 2.97 -795.00 -2.36 -11.79 16 22 C 0.50 10.73 7.53 87.66 0.66 11.39 16 23 O -0.57 -19.31 11.11 -3.02 -0.03 -19.34 16 24 C -0.10 -1.21 4.34 29.85 0.13 -1.08 16 25 C -0.16 -3.02 5.41 -10.79 -0.06 -3.07 16 26 C -0.19 -3.17 10.18 30.59 0.31 -2.86 16 27 C -0.16 -1.96 10.25 30.59 0.31 -1.64 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.11 4.23 8.14 -2.40 -0.02 4.21 16 31 H 0.41 8.61 7.47 -92.71 -0.69 7.92 16 32 H 0.04 1.48 7.23 -2.38 -0.02 1.46 16 33 H 0.06 2.45 6.24 -2.39 -0.01 2.43 16 34 H 0.08 1.09 7.09 -2.39 -0.02 1.07 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.11 0.13 5.93 -2.39 -0.01 0.12 16 41 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.13 0.81 7.72 -2.39 -0.02 0.79 16 43 H 0.12 0.94 7.64 -2.39 -0.02 0.92 16 44 H 0.08 2.14 7.30 -2.39 -0.02 2.12 16 45 H 0.11 1.43 8.03 -2.39 -0.02 1.41 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -90.70 395.05 1.66 -89.04 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.26 Total: 22.11 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.11 Total: -4.01 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -4.50 Total: -93.26 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -0.08 Total: -49.98 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.16 Total: -10.47 kcal Total: -90.70 1.66 -89.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001061962838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.796 kcal (2) G-P(sol) polarization free energy of solvation -90.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds