Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00318 * 2 1 4 4 H 1.48494 * 109.47516 * 270.00225 * 3 2 1 5 5 H 1.48505 * 109.46875 * 30.00805 * 3 2 1 6 6 H 1.48501 * 109.47138 * 150.00391 * 3 2 1 7 7 C 1.38801 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99813 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99850 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46956 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99823 * 359.97438 * 11 10 9 13 13 N 1.34768 * 119.99819 * 180.02562 * 11 10 9 14 14 C 1.46928 * 120.63377 * 5.35408 * 13 11 10 15 15 C 1.53196 * 108.77684 * 233.63172 * 14 13 11 16 16 C 1.53040 * 109.30902 * 305.36212 * 15 14 13 17 17 C 1.53032 * 109.53802 * 61.36897 * 16 15 14 18 18 C 1.46925 * 120.63197 * 185.37822 * 13 11 10 19 19 H 1.09001 * 109.70517 * 246.22547 * 18 13 11 20 20 C 1.52997 * 109.58456 * 6.57748 * 18 13 11 21 21 N 1.46506 * 109.47140 * 177.94195 * 20 18 13 22 22 C 1.34774 * 120.00122 * 175.05951 * 21 20 18 23 23 O 1.21288 * 120.00040 * 0.02562 * 22 21 20 24 24 C 1.50699 * 120.00125 * 180.02562 * 22 21 20 25 25 C 1.53781 * 113.61455 * 277.49738 * 24 22 21 26 26 C 1.53776 * 87.08217 * 220.01832 * 25 24 22 27 27 C 1.53780 * 87.08328 * 25.43628 * 26 25 24 28 28 H 0.97003 * 119.99541 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47103 * 59.99708 * 10 9 7 30 30 H 1.08998 * 109.46997 * 299.99937 * 10 9 7 31 31 H 1.09000 * 109.58802 * 113.84132 * 14 13 11 32 32 H 1.09001 * 109.58206 * 353.41864 * 14 13 11 33 33 H 1.08996 * 109.49351 * 185.40959 * 15 14 13 34 34 H 1.09000 * 109.52043 * 65.32785 * 15 14 13 35 35 H 1.08992 * 109.46318 * 301.33890 * 16 15 14 36 36 H 1.09003 * 109.45654 * 181.38354 * 16 15 14 37 37 H 1.08999 * 109.49981 * 178.67743 * 17 16 15 38 38 H 1.08999 * 109.52950 * 58.60049 * 17 16 15 39 39 H 1.08998 * 109.47322 * 57.94866 * 20 18 13 40 40 H 1.08998 * 109.47425 * 297.94522 * 20 18 13 41 41 H 0.97004 * 119.99950 * 355.06987 * 21 20 18 42 42 H 1.08998 * 112.85101 * 48.80729 * 24 22 21 43 43 H 1.09002 * 113.61623 * 334.57274 * 25 24 22 44 44 H 1.09005 * 113.61031 * 105.46945 * 25 24 22 45 45 H 1.08998 * 113.61894 * 270.88598 * 26 25 24 46 46 H 1.09000 * 113.68862 * 139.99400 * 26 25 24 47 47 H 1.09000 * 113.61303 * 220.01989 * 27 26 25 48 48 H 1.08999 * 113.69343 * 89.12494 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7002 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9871 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0011 13 7 2.8438 -6.3432 -0.0008 14 6 4.2913 -6.1210 0.1183 15 6 4.9957 -6.8256 -1.0455 16 6 4.5857 -8.2999 -1.0671 17 6 3.0742 -8.4078 -1.2809 18 6 2.3481 -7.7211 -0.1199 19 1 2.5437 -8.2634 0.8053 20 6 0.8432 -7.7028 -0.3951 21 7 0.3605 -9.0759 -0.5621 22 6 -0.9573 -9.3131 -0.7152 23 8 -1.7437 -8.3897 -0.7152 24 6 -1.4539 -10.7256 -0.8865 25 6 -1.3447 -11.2462 -2.3293 26 6 -2.7161 -11.9069 -2.1112 27 6 -2.9798 -10.8267 -1.0489 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7315 0.8894 30 1 3.1243 -3.7315 -0.8905 31 1 4.6475 -6.5312 1.0632 32 1 4.5013 -5.0522 0.0793 33 1 6.0753 -6.7500 -0.9166 34 1 4.7074 -6.3540 -1.9849 35 1 4.8525 -8.7650 -0.1182 36 1 5.1045 -8.8092 -1.8793 37 1 2.7863 -9.4584 -1.3197 38 1 2.8032 -7.9216 -2.2180 39 1 0.6471 -7.1356 -1.3050 40 1 0.3262 -7.2354 0.4430 41 1 0.9894 -9.8145 -0.5624 42 1 -1.0478 -11.4102 -0.1419 43 1 -1.3550 -10.4564 -3.0805 44 1 -0.5343 -11.9604 -2.4756 45 1 -2.6549 -12.9155 -1.7025 46 1 -3.3769 -11.8398 -2.9755 47 1 -3.4894 -11.2022 -0.1616 48 1 -3.4373 -9.9217 -1.4487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062018454.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -47.873438 kcal Electronic energy + Delta-G solvation = -27690.981811 eV Core-core repulsion = 23872.863381 eV Total energy + Delta-G solvation = -3818.118430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66448 -39.98753 -37.58302 -37.22145 -34.98143 -32.94239 -32.41500 -31.73130 -29.08349 -27.78719 -25.95315 -25.75375 -25.38415 -24.59150 -22.26737 -21.19228 -20.84958 -19.64331 -18.96228 -17.80531 -17.40698 -16.74280 -16.28460 -15.73424 -15.45138 -15.21529 -14.81137 -14.79289 -14.64947 -14.23493 -14.11862 -14.01917 -13.71033 -13.42449 -13.06437 -12.94335 -12.67726 -12.65331 -12.51789 -12.18230 -11.95377 -11.82424 -11.38901 -11.32743 -11.18837 -11.05706 -11.02690 -10.94097 -10.81727 -10.77569 -10.74446 -10.63780 -9.79556 -9.66738 -9.09613 -9.05118 -8.79146 -8.47970 -8.20076 -6.48342 -6.19942 -3.90665 2.71101 2.74627 2.99478 3.19970 3.23015 3.29848 3.36028 3.63798 4.21019 4.28297 4.36464 4.40816 4.51353 4.53394 4.56820 4.60423 4.79516 4.94632 5.00280 5.04449 5.09242 5.14929 5.26120 5.28970 5.39673 5.41905 5.49821 5.54266 5.56153 5.58828 5.60594 5.73252 5.74310 5.78722 5.80629 5.85425 5.86910 6.02125 6.10441 6.18296 6.19473 6.27755 6.48262 6.70620 7.48483 7.56148 7.60581 8.34172 8.36249 8.53633 9.24988 10.87361 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012524 B = 0.002746 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.134466 B =10193.080060 C =12136.150386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.151 4.151 11 C 0.531 3.469 12 O -0.501 6.501 13 N -0.615 5.615 14 C 0.109 3.891 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.133 4.133 18 C 0.140 3.860 19 H 0.073 0.927 20 C 0.121 3.879 21 N -0.735 5.735 22 C 0.516 3.484 23 O -0.526 6.526 24 C -0.139 4.139 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.119 4.119 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.390 0.610 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.233 -25.915 -2.562 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.301 4.301 11 C 0.320 3.680 12 O -0.375 6.375 13 N -0.352 5.352 14 C -0.014 4.014 15 C -0.176 4.176 16 C -0.155 4.155 17 C -0.172 4.172 18 C 0.036 3.964 19 H 0.091 0.909 20 C -0.001 4.001 21 N -0.390 5.390 22 C 0.302 3.698 23 O -0.402 6.402 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.180 4.180 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.223 0.777 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.708 -25.358 -2.545 26.117 hybrid contribution 2.608 0.920 0.027 2.766 sum 8.316 -24.438 -2.518 25.937 Atomic orbital electron populations 1.70024 1.05940 1.27451 1.46737 1.24995 0.95019 0.99015 0.94576 0.86176 0.79394 0.81639 0.78329 1.20287 1.20750 1.19718 1.22852 0.94847 0.91688 1.59027 0.90987 1.85495 1.04678 0.96262 1.96679 1.23576 1.06569 0.95344 1.04637 1.20449 0.86357 0.86228 0.74982 1.90757 1.15186 1.83976 1.47545 1.48113 1.06978 1.04935 1.75218 1.21742 0.79385 1.02073 0.98189 1.21943 1.00254 0.95889 0.99480 1.21492 0.95444 0.96557 1.02008 1.22036 0.95603 1.00397 0.99120 1.21335 0.93821 0.83169 0.98102 0.90918 1.22264 0.91842 0.80769 1.05203 1.46375 1.07815 1.09874 1.74912 1.20432 0.82104 0.90964 0.76338 1.90774 1.54946 1.45639 1.48807 1.22808 0.99284 0.94351 0.99603 1.22815 0.98268 1.00223 0.94811 1.22830 0.97096 0.98378 0.99698 1.22810 0.93620 0.99853 0.99382 0.92169 0.89323 0.89289 0.91419 0.88949 0.90665 0.91181 0.91783 0.91644 0.91121 0.91024 0.90561 0.87585 0.77652 0.87254 0.89610 0.90868 0.90022 0.91004 0.91091 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -3.03 4.51 36.01 0.16 -2.87 16 11 C 0.53 9.89 7.55 -10.99 -0.08 9.81 16 12 O -0.50 -11.18 11.41 5.55 0.06 -11.12 16 13 N -0.62 -8.34 2.97 -165.22 -0.49 -8.83 16 14 C 0.11 1.12 6.35 -3.71 -0.02 1.09 16 15 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 16 C -0.12 -0.84 5.88 -26.69 -0.16 -1.00 16 17 C -0.13 -1.15 5.09 -26.62 -0.14 -1.28 16 18 C 0.14 1.60 3.11 -67.60 -0.21 1.39 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 20 C 0.12 1.80 3.56 -4.04 -0.01 1.78 16 21 N -0.74 -8.44 5.33 -60.29 -0.32 -8.76 16 22 C 0.52 7.00 7.36 -10.99 -0.08 6.92 16 23 O -0.53 -10.10 15.89 5.55 0.09 -10.01 16 24 C -0.14 -1.27 4.15 -90.96 -0.38 -1.65 16 25 C -0.12 -0.93 7.63 -25.92 -0.20 -1.13 16 26 C -0.14 -1.01 8.08 -25.92 -0.21 -1.22 16 27 C -0.12 -1.13 7.41 -25.92 -0.19 -1.33 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.65 7.72 -51.92 -0.40 1.25 16 30 H 0.09 1.67 7.91 -51.92 -0.41 1.25 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 6.88 -51.93 -0.36 0.10 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.39 7.22 -51.93 -0.37 1.01 16 40 H 0.11 2.01 6.25 -51.93 -0.32 1.68 16 41 H 0.39 2.98 7.15 -40.82 -0.29 2.69 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 1.16 7.43 -51.93 -0.39 0.77 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -36.56 390.42 -10.65 -47.22 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.89 Total: 2.39 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.48 Total: -3.77 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.08 Total: -43.31 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: 0.15 Total: -21.13 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.56 -10.65 -47.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062018454.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.658 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds