Wall clock time and date at job start Sat Apr 11 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99783 * 2 1 4 4 H 1.48507 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47506 * 300.00214 * 3 2 1 6 6 H 1.48507 * 109.47167 * 60.00667 * 3 2 1 7 7 C 1.38795 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99983 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00339 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.44585 * 118.64164 * 0.02562 * 13 11 10 15 15 C 1.54861 * 109.59747 * 270.44455 * 14 13 11 16 16 C 1.47100 * 110.32368 * 288.73147 * 15 14 13 17 17 C 1.52569 * 114.32017 * 62.80172 * 16 15 14 18 18 H 1.08996 * 109.49520 * 34.95926 * 17 16 15 19 19 N 1.46506 * 109.48847 * 155.02695 * 17 16 15 20 20 C 1.34773 * 120.00237 * 205.00358 * 19 17 16 21 21 O 1.21288 * 119.99972 * 359.97438 * 20 19 17 22 22 C 1.50697 * 120.00322 * 179.97438 * 20 19 17 23 23 C 1.52997 * 109.47421 * 179.97438 * 22 20 19 24 24 C 1.52995 * 117.50194 * 243.75163 * 23 22 20 25 25 C 1.52992 * 117.50175 * 175.08653 * 23 22 20 26 26 C 1.50885 * 109.35908 * 274.98679 * 17 16 15 27 27 C 1.47600 * 118.64437 * 179.73114 * 13 11 10 28 28 H 0.97008 * 120.00042 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47055 * 60.00177 * 10 9 7 30 30 H 1.09000 * 109.46796 * 300.00351 * 10 9 7 31 31 H 1.09000 * 109.45055 * 30.48371 * 14 13 11 32 32 H 1.08998 * 109.45035 * 150.40523 * 14 13 11 33 33 H 1.09005 * 109.32975 * 48.99148 * 15 14 13 34 34 H 1.08995 * 109.33099 * 168.64307 * 15 14 13 35 35 H 1.08992 * 108.51411 * 184.05213 * 16 15 14 36 36 H 1.08995 * 108.50855 * 301.71077 * 16 15 14 37 37 H 0.97003 * 119.99682 * 24.99265 * 19 17 16 38 38 H 1.09000 * 109.47191 * 299.99890 * 22 20 19 39 39 H 1.09000 * 109.46990 * 59.99616 * 22 20 19 40 40 H 1.09008 * 115.54930 * 29.42041 * 23 22 20 41 41 H 1.09000 * 117.49774 * 359.97438 * 24 23 22 42 42 H 1.08998 * 117.50140 * 145.02495 * 24 23 22 43 43 H 1.09004 * 117.50400 * 214.98518 * 25 23 22 44 44 H 1.09005 * 117.49967 * 359.97438 * 25 23 22 45 45 H 1.09002 * 109.36448 * 212.08424 * 26 17 16 46 46 H 1.08998 * 109.36476 * 331.82300 * 26 17 16 47 47 H 1.08997 * 108.94877 * 258.83650 * 27 13 11 48 48 H 1.08994 * 108.94664 * 17.46388 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0018 14 6 4.2643 -6.0715 -0.0013 15 6 4.7726 -5.9616 -1.4600 16 6 4.7757 -7.2856 -2.1010 17 6 3.3963 -7.9250 -2.2289 18 1 2.6523 -7.1505 -2.4149 19 7 3.4003 -8.8770 -3.3424 20 6 2.2485 -9.1822 -3.9722 21 8 1.2086 -8.6691 -3.6169 22 6 2.2526 -10.1611 -5.1180 23 6 0.8282 -10.3291 -5.6505 24 6 0.1857 -11.7119 -5.5254 25 6 0.6371 -11.1983 -6.8949 26 6 3.0601 -8.6492 -0.9486 27 6 2.2940 -7.7127 0.0037 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7312 -0.8905 31 1 4.4543 -5.1337 0.5209 32 1 4.7885 -6.8815 0.5058 33 1 4.1204 -5.2912 -2.0198 34 1 5.7865 -5.5615 -1.4595 35 1 5.2049 -7.1864 -3.0979 36 1 5.4105 -7.9515 -1.5166 37 1 4.2320 -9.2876 -3.6265 38 1 2.8965 -9.7864 -5.9137 39 1 2.6266 -11.1245 -4.7714 40 1 0.1790 -9.4605 -5.5387 41 1 0.7779 -12.5022 -5.0641 42 1 -0.8862 -11.7533 -5.3318 43 1 -0.1380 -10.9020 -7.6017 44 1 1.5263 -11.6502 -7.3346 45 1 2.4420 -9.5177 -1.1763 46 1 3.9809 -8.9773 -0.4665 47 1 2.3511 -8.1130 1.0158 48 1 1.2484 -7.6753 -0.3019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001065728418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:55 Heat of formation + Delta-G solvation = -53.297741 kcal Electronic energy + Delta-G solvation = -27557.845483 eV Core-core repulsion = 23739.491838 eV Total energy + Delta-G solvation = -3818.353646 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59917 -39.60605 -37.79584 -37.00823 -34.96652 -33.05090 -32.39628 -32.30203 -29.85757 -28.75410 -26.56892 -25.49454 -24.99845 -22.68194 -22.13037 -21.55889 -20.81655 -20.15187 -18.82037 -17.65281 -17.44575 -16.89544 -16.52139 -16.09780 -15.77568 -15.29383 -15.02502 -14.78053 -14.49636 -14.37060 -14.11248 -13.97995 -13.72103 -13.41848 -13.24119 -13.04282 -12.67185 -12.47201 -12.36493 -11.89575 -11.82628 -11.77334 -11.74314 -11.42237 -11.11294 -11.05148 -10.99201 -10.89245 -10.81831 -10.71931 -10.65207 -10.33326 -9.89539 -9.75803 -9.33047 -9.23785 -9.04388 -8.43164 -8.16373 -6.45733 -6.18393 -3.88499 2.50622 2.88711 2.99213 3.13313 3.23185 3.28296 3.32870 3.52042 3.65382 4.23051 4.34348 4.35542 4.42717 4.54496 4.61187 4.80436 4.82849 4.88271 4.95633 5.06470 5.07804 5.16456 5.19377 5.23140 5.30807 5.31724 5.34076 5.39713 5.50139 5.58412 5.60489 5.64214 5.76116 5.79438 5.81067 5.88856 5.94426 5.98273 6.03948 6.05891 6.13726 6.22550 6.34228 6.78242 7.30056 7.60780 7.63087 8.09600 8.38353 8.64415 9.26717 10.89048 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002448 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092789 B =11436.330721 C =12203.259520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.072 0.928 9 S -0.063 6.063 10 C -0.149 4.149 11 C 0.528 3.472 12 O -0.512 6.512 13 N -0.616 5.616 14 C 0.111 3.889 15 C -0.141 4.141 16 C -0.120 4.120 17 C 0.146 3.854 18 H 0.095 0.905 19 N -0.732 5.732 20 C 0.510 3.490 21 O -0.524 6.524 22 C -0.109 4.109 23 C -0.142 4.142 24 C -0.178 4.178 25 C -0.181 4.181 26 C -0.136 4.136 27 C 0.117 3.883 28 H 0.267 0.733 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.613 -24.289 -8.581 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.681 4.681 8 H 0.091 0.909 9 S 0.164 5.836 10 C -0.300 4.300 11 C 0.316 3.684 12 O -0.386 6.386 13 N -0.352 5.352 14 C -0.013 4.013 15 C -0.180 4.180 16 C -0.158 4.158 17 C 0.041 3.959 18 H 0.113 0.887 19 N -0.384 5.384 20 C 0.296 3.704 21 O -0.399 6.399 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.215 4.215 25 C -0.218 4.218 26 C -0.175 4.175 27 C -0.006 4.006 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.906 -24.123 -8.315 27.749 hybrid contribution 2.566 1.002 -0.165 2.759 sum 13.472 -23.121 -8.480 28.071 Atomic orbital electron populations 1.70038 1.05940 1.27281 1.46982 1.24996 0.95019 0.99011 0.94638 0.86128 0.79561 0.81976 0.77879 1.19638 1.20599 1.20591 1.22892 0.94877 0.91652 1.58711 0.90936 1.85463 1.05135 0.96360 1.96662 1.23587 1.06321 0.95457 1.04612 1.20425 0.86423 0.86411 0.75174 1.90700 1.15330 1.85255 1.47312 1.47719 1.06188 1.05758 1.75533 1.21565 0.81121 1.02471 0.96183 1.21273 1.02468 0.97137 0.97096 1.20688 0.95823 0.97701 1.01587 1.20467 0.98673 0.91470 0.85248 0.88668 1.46188 1.10072 1.46687 1.35410 1.20625 0.83661 0.82537 0.83588 1.90785 1.31274 1.52262 1.65566 1.21215 0.97636 0.99302 0.96735 1.22078 0.96487 0.96164 1.01300 1.23040 1.01496 0.96888 1.00083 1.23008 1.03428 1.04210 0.91165 1.22157 1.00935 0.98855 0.95560 1.21665 0.99640 0.80833 0.98453 0.92270 0.89322 0.89295 0.89697 0.90650 0.90879 0.90135 0.91582 0.91675 0.76984 0.88585 0.88966 0.86207 0.88937 0.88658 0.88622 0.88854 0.90410 0.91554 0.92105 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 10 C -0.15 -3.09 4.65 36.00 0.17 -2.92 16 11 C 0.53 10.41 7.64 -10.99 -0.08 10.33 16 12 O -0.51 -12.35 15.14 5.56 0.08 -12.27 16 13 N -0.62 -8.88 2.24 -172.53 -0.39 -9.27 16 14 C 0.11 1.17 5.17 -4.08 -0.02 1.15 16 15 C -0.14 -1.33 5.62 -28.58 -0.16 -1.49 16 16 C -0.12 -0.95 4.70 -29.78 -0.14 -1.09 16 17 C 0.15 1.52 2.06 -69.21 -0.14 1.38 16 18 H 0.10 1.45 6.92 -51.93 -0.36 1.09 16 19 N -0.73 -6.17 4.93 -55.06 -0.27 -6.45 16 20 C 0.51 5.54 7.65 -10.99 -0.08 5.46 16 21 O -0.52 -8.51 15.23 5.55 0.08 -8.43 16 22 C -0.11 -0.79 5.98 -27.89 -0.17 -0.95 16 23 C -0.14 -1.27 5.41 -90.63 -0.49 -1.76 16 24 C -0.18 -1.38 10.18 -26.70 -0.27 -1.65 16 25 C -0.18 -1.26 10.25 -26.70 -0.27 -1.53 16 26 C -0.14 -1.36 5.39 -27.28 -0.15 -1.51 16 27 C 0.12 1.54 6.10 -2.93 -0.02 1.52 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.68 7.30 -51.92 -0.38 1.31 16 30 H 0.09 1.71 7.12 -51.92 -0.37 1.34 16 31 H 0.08 0.92 6.25 -51.93 -0.32 0.60 16 32 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.07 0.89 7.31 -51.93 -0.38 0.51 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 36 H 0.06 0.40 7.35 -51.93 -0.38 0.02 16 37 H 0.40 1.95 8.60 -40.82 -0.35 1.60 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.47 7.87 -51.93 -0.41 0.06 16 40 H 0.12 1.40 7.31 -51.92 -0.38 1.02 16 41 H 0.09 0.60 8.03 -51.93 -0.42 0.19 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.82 7.85 -51.93 -0.41 0.42 16 46 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.09 1.55 6.96 -51.93 -0.36 1.19 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -37.49 395.25 -10.48 -47.97 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.81 Total: 1.78 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.63 Total: -6.11 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.08 Total: -41.52 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.17 Total: -20.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.49 -10.48 -47.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065728418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.323 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds