Wall clock time and date at job start Sat Apr 11 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99783 * 2 1 4 4 H 1.48507 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47506 * 300.00214 * 3 2 1 6 6 H 1.48507 * 109.47167 * 60.00667 * 3 2 1 7 7 C 1.38795 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00456 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99983 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00339 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.44585 * 118.64164 * 0.02562 * 13 11 10 15 15 C 1.54861 * 109.59747 * 270.44455 * 14 13 11 16 16 C 1.47100 * 110.32368 * 288.73147 * 15 14 13 17 17 C 1.52569 * 114.32017 * 62.80172 * 16 15 14 18 18 H 1.08996 * 109.49520 * 34.95926 * 17 16 15 19 19 N 1.46506 * 109.48847 * 155.02695 * 17 16 15 20 20 C 1.34773 * 120.00237 * 205.00358 * 19 17 16 21 21 O 1.21288 * 119.99972 * 359.97438 * 20 19 17 22 22 C 1.50697 * 120.00322 * 179.97438 * 20 19 17 23 23 C 1.52997 * 109.47421 * 179.97438 * 22 20 19 24 24 C 1.52995 * 117.50194 * 243.75163 * 23 22 20 25 25 C 1.52992 * 117.50175 * 175.08653 * 23 22 20 26 26 C 1.50885 * 109.35908 * 274.98679 * 17 16 15 27 27 C 1.47600 * 118.64437 * 179.73114 * 13 11 10 28 28 H 0.97008 * 120.00042 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47055 * 60.00177 * 10 9 7 30 30 H 1.09000 * 109.46796 * 300.00351 * 10 9 7 31 31 H 1.09000 * 109.45055 * 30.48371 * 14 13 11 32 32 H 1.08998 * 109.45035 * 150.40523 * 14 13 11 33 33 H 1.09005 * 109.32975 * 48.99148 * 15 14 13 34 34 H 1.08995 * 109.33099 * 168.64307 * 15 14 13 35 35 H 1.08992 * 108.51411 * 184.05213 * 16 15 14 36 36 H 1.08995 * 108.50855 * 301.71077 * 16 15 14 37 37 H 0.97003 * 119.99682 * 24.99265 * 19 17 16 38 38 H 1.09000 * 109.47191 * 299.99890 * 22 20 19 39 39 H 1.09000 * 109.46990 * 59.99616 * 22 20 19 40 40 H 1.09008 * 115.54930 * 29.42041 * 23 22 20 41 41 H 1.09000 * 117.49774 * 359.97438 * 24 23 22 42 42 H 1.08998 * 117.50140 * 145.02495 * 24 23 22 43 43 H 1.09004 * 117.50400 * 214.98518 * 25 23 22 44 44 H 1.09005 * 117.49967 * 359.97438 * 25 23 22 45 45 H 1.09002 * 109.36448 * 212.08424 * 26 17 16 46 46 H 1.08998 * 109.36476 * 331.82300 * 26 17 16 47 47 H 1.08997 * 108.94877 * 258.83650 * 27 13 11 48 48 H 1.08994 * 108.94664 * 17.46388 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8442 -6.3431 -0.0018 14 6 4.2643 -6.0715 -0.0013 15 6 4.7726 -5.9616 -1.4600 16 6 4.7757 -7.2856 -2.1010 17 6 3.3963 -7.9250 -2.2289 18 1 2.6523 -7.1505 -2.4149 19 7 3.4003 -8.8770 -3.3424 20 6 2.2485 -9.1822 -3.9722 21 8 1.2086 -8.6691 -3.6169 22 6 2.2526 -10.1611 -5.1180 23 6 0.8282 -10.3291 -5.6505 24 6 0.1857 -11.7119 -5.5254 25 6 0.6371 -11.1983 -6.8949 26 6 3.0601 -8.6492 -0.9486 27 6 2.2940 -7.7127 0.0037 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7313 0.8894 30 1 3.1245 -3.7312 -0.8905 31 1 4.4543 -5.1337 0.5209 32 1 4.7885 -6.8815 0.5058 33 1 4.1204 -5.2912 -2.0198 34 1 5.7865 -5.5615 -1.4595 35 1 5.2049 -7.1864 -3.0979 36 1 5.4105 -7.9515 -1.5166 37 1 4.2320 -9.2876 -3.6265 38 1 2.8965 -9.7864 -5.9137 39 1 2.6266 -11.1245 -4.7714 40 1 0.1790 -9.4605 -5.5387 41 1 0.7779 -12.5022 -5.0641 42 1 -0.8862 -11.7533 -5.3318 43 1 -0.1380 -10.9020 -7.6017 44 1 1.5263 -11.6502 -7.3346 45 1 2.4420 -9.5177 -1.1763 46 1 3.9809 -8.9773 -0.4665 47 1 2.3511 -8.1130 1.0158 48 1 1.2484 -7.6753 -0.3019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065728418.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:54 Heat of formation + Delta-G solvation = -79.328715 kcal Electronic energy + Delta-G solvation = -27558.974271 eV Core-core repulsion = 23739.491838 eV Total energy + Delta-G solvation = -3819.482433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.63228 -40.72147 -38.81013 -37.85564 -36.07361 -34.59863 -33.96997 -33.32426 -30.91679 -29.94234 -27.74131 -27.45677 -25.97712 -23.27925 -23.19055 -22.32834 -21.69910 -20.87449 -20.29604 -19.44258 -18.26166 -18.20281 -17.56433 -17.26647 -16.89541 -16.67249 -16.30045 -16.05800 -15.96673 -15.36078 -15.21857 -14.92479 -14.78901 -14.54717 -14.34156 -14.22384 -13.98976 -13.56762 -13.44438 -13.19521 -13.16209 -12.92391 -12.80726 -12.59491 -12.43052 -12.34789 -12.28703 -11.99961 -11.71088 -11.67379 -11.61317 -11.32328 -11.16894 -10.98030 -10.86488 -10.73963 -10.26722 -10.16153 -9.63194 -8.70090 -8.35470 -6.14883 1.24493 1.40939 1.44963 1.55376 1.57693 1.67866 2.09912 2.16744 2.26281 2.91420 2.98544 3.25379 3.56266 3.71897 3.75230 3.79440 3.84275 3.98238 4.02648 4.08570 4.10158 4.16215 4.24334 4.33330 4.42175 4.48296 4.55137 4.61657 4.66189 4.69867 4.78315 4.79057 4.80832 4.90556 4.97205 5.03311 5.11111 5.14003 5.23147 5.25564 5.32893 5.37308 5.40411 5.56171 5.65322 6.18929 6.29960 6.62105 7.05111 7.15547 7.35687 8.74324 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.002448 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092789 B =11436.330721 C =12203.259520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 1.003 2.997 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.085 0.915 9 S -0.164 6.164 10 C -0.118 4.118 11 C 0.522 3.478 12 O -0.572 6.572 13 N -0.597 5.597 14 C 0.097 3.903 15 C -0.137 4.137 16 C -0.115 4.115 17 C 0.144 3.856 18 H 0.036 0.964 19 N -0.712 5.712 20 C 0.502 3.498 21 O -0.592 6.592 22 C -0.096 4.096 23 C -0.168 4.168 24 C -0.182 4.182 25 C -0.162 4.162 26 C -0.123 4.123 27 C 0.115 3.885 28 H 0.271 0.729 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.035 0.965 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.420 0.580 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.083 0.917 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.114 -26.098 -8.965 33.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.824 3.176 4 H -0.176 1.176 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.688 4.688 8 H 0.103 0.897 9 S 0.063 5.937 10 C -0.269 4.269 11 C 0.310 3.690 12 O -0.451 6.451 13 N -0.330 5.330 14 C -0.025 4.025 15 C -0.176 4.176 16 C -0.153 4.153 17 C 0.039 3.961 18 H 0.054 0.946 19 N -0.365 5.365 20 C 0.290 3.710 21 O -0.471 6.471 22 C -0.135 4.135 23 C -0.186 4.186 24 C -0.219 4.219 25 C -0.199 4.199 26 C -0.162 4.162 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.129 0.871 47 H 0.101 0.899 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.520 -25.992 -8.713 32.006 hybrid contribution 0.868 1.441 -0.058 1.683 sum 17.387 -24.550 -8.771 31.336 Atomic orbital electron populations 1.70219 1.08135 1.28539 1.48136 1.26207 0.95998 1.03531 0.93738 0.84857 0.78703 0.76015 0.78050 1.17645 1.20028 1.19858 1.23205 0.95314 0.91605 1.58710 0.89678 1.85729 1.11191 0.99765 1.97021 1.23376 1.03055 0.94091 1.06331 1.20360 0.86198 0.87207 0.75261 1.90680 1.17876 1.85950 1.50567 1.47709 1.07423 1.04926 1.72940 1.22029 0.78484 1.04235 0.97749 1.21276 1.03204 0.97567 0.95528 1.20664 0.94206 0.97273 1.03127 1.20368 0.99005 0.90751 0.85986 0.94583 1.45995 1.10503 1.45671 1.34335 1.21409 0.83150 0.82333 0.84103 1.90778 1.33851 1.54876 1.67629 1.21235 0.96879 0.99697 0.95719 1.22014 0.97322 0.95382 1.03928 1.23135 1.01168 0.96516 1.01116 1.23095 1.04115 1.02325 0.90377 1.22098 1.02058 0.97288 0.94739 1.21771 0.97767 0.80696 1.00536 0.92036 0.87032 0.87689 0.89745 0.86348 0.94618 0.86901 0.90136 0.87725 0.74229 0.86011 0.85685 0.90426 0.87027 0.89881 0.88906 0.86258 0.91184 0.87121 0.89883 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.89 13.22 21.65 0.29 -57.60 16 2 C 0.01 0.56 5.49 84.86 0.47 1.02 16 3 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 8 H 0.09 4.59 7.80 -2.91 -0.02 4.56 16 9 S -0.16 -9.65 20.57 -56.49 -1.16 -10.81 16 10 C -0.12 -4.99 4.65 71.24 0.33 -4.66 16 11 C 0.52 21.63 7.64 87.66 0.67 22.30 16 12 O -0.57 -30.05 15.14 -3.02 -0.05 -30.09 16 13 N -0.60 -17.05 2.24 -818.14 -1.83 -18.88 16 14 C 0.10 1.75 5.17 87.37 0.45 2.20 16 15 C -0.14 -2.16 5.62 29.40 0.17 -1.99 16 16 C -0.12 -1.35 4.70 28.62 0.13 -1.22 16 17 C 0.14 2.83 2.06 44.16 0.09 2.92 16 18 H 0.04 1.17 6.92 -2.39 -0.02 1.15 16 19 N -0.71 -10.66 4.93 -446.49 -2.20 -12.87 16 20 C 0.50 10.96 7.65 87.66 0.67 11.63 16 21 O -0.59 -21.08 15.23 -3.05 -0.05 -21.12 16 22 C -0.10 -1.22 5.98 29.85 0.18 -1.04 16 23 C -0.17 -3.07 5.41 -10.80 -0.06 -3.12 16 24 C -0.18 -2.73 10.18 30.62 0.31 -2.42 16 25 C -0.16 -2.03 10.25 30.62 0.31 -1.72 16 26 C -0.12 -2.22 5.39 30.24 0.16 -2.05 16 27 C 0.11 3.04 6.10 86.50 0.53 3.57 16 28 H 0.27 15.85 8.31 -92.70 -0.77 15.07 16 29 H 0.11 4.19 7.30 -2.40 -0.02 4.17 16 30 H 0.10 4.09 7.12 -2.40 -0.02 4.07 16 31 H 0.08 1.57 6.25 -2.39 -0.01 1.56 16 32 H 0.12 1.22 8.06 -2.39 -0.02 1.20 16 33 H 0.03 0.84 7.31 -2.38 -0.02 0.82 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.78 8.04 -2.39 -0.02 0.76 16 36 H 0.10 0.52 7.35 -2.39 -0.02 0.51 16 37 H 0.42 2.41 8.60 -92.71 -0.80 1.61 16 38 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.13 0.79 7.87 -2.39 -0.02 0.77 16 40 H 0.08 2.08 7.31 -2.38 -0.02 2.06 16 41 H 0.11 1.22 8.03 -2.39 -0.02 1.20 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.12 0.89 8.14 -2.38 -0.02 0.88 16 45 H 0.07 1.41 7.85 -2.39 -0.02 1.40 16 46 H 0.11 1.08 7.31 -2.39 -0.02 1.06 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.04 1.65 6.96 -2.39 -0.02 1.63 16 Total: -1.00 -93.71 395.25 2.26 -91.46 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.17 Total: 19.13 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.06 Total: -5.62 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.75 Total: -89.35 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.09 Total: -51.21 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: -9.65 SS G_CDS: -1.16 Total: -10.81 kcal Total: -93.71 2.26 -91.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065728418.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.127 kcal (2) G-P(sol) polarization free energy of solvation -93.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds