Wall clock time and date at job start Sat Apr 11 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86802 * 119.99782 * 2 1 4 4 H 1.48500 * 109.46829 * 269.99792 * 3 2 1 5 5 H 1.48496 * 109.47342 * 29.99859 * 3 2 1 6 6 H 1.48498 * 109.47222 * 149.99966 * 3 2 1 7 7 C 1.38800 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99812 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00191 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47345 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00348 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00095 * 179.97438 * 11 10 9 14 14 C 1.44576 * 118.64315 * 0.02562 * 13 11 10 15 15 C 1.54862 * 109.60286 * 89.27303 * 14 13 11 16 16 C 1.47098 * 110.32131 * 71.26606 * 15 14 13 17 17 C 1.52567 * 114.32636 * 297.19801 * 16 15 14 18 18 H 1.08999 * 109.48958 * 325.02317 * 17 16 15 19 19 N 1.46498 * 109.48998 * 204.97663 * 17 16 15 20 20 C 1.34777 * 119.99828 * 154.72291 * 19 17 16 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 17 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 17 23 23 C 1.52990 * 109.47398 * 180.02562 * 22 20 19 24 24 C 1.52998 * 117.50337 * 243.74760 * 23 22 20 25 25 C 1.53002 * 117.50148 * 175.08627 * 23 22 20 26 26 C 1.50884 * 109.35589 * 85.01570 * 17 16 15 27 27 C 1.47605 * 118.64702 * 179.97438 * 13 11 10 28 28 H 0.96995 * 120.00118 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47114 * 59.99476 * 10 9 7 30 30 H 1.09003 * 109.46886 * 300.00090 * 10 9 7 31 31 H 1.08997 * 109.45246 * 329.23352 * 14 13 11 32 32 H 1.08996 * 109.43116 * 209.29974 * 14 13 11 33 33 H 1.09003 * 109.32796 * 311.01139 * 15 14 13 34 34 H 1.08998 * 109.33194 * 191.52660 * 15 14 13 35 35 H 1.09003 * 108.51171 * 175.94810 * 16 15 14 36 36 H 1.09003 * 108.51069 * 58.45599 * 16 15 14 37 37 H 0.97001 * 120.00384 * 335.00738 * 19 17 16 38 38 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 39 39 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 40 40 H 1.09004 * 115.55175 * 29.42302 * 23 22 20 41 41 H 1.08999 * 117.49587 * 359.97438 * 24 23 22 42 42 H 1.08994 * 117.50263 * 145.02165 * 24 23 22 43 43 H 1.08996 * 117.50212 * 214.98533 * 25 23 22 44 44 H 1.08999 * 117.49520 * 359.97438 * 25 23 22 45 45 H 1.08997 * 109.36843 * 28.30487 * 26 17 16 46 46 H 1.09005 * 109.36537 * 147.92557 * 26 17 16 47 47 H 1.09000 * 108.94488 * 342.81947 * 27 13 11 48 48 H 1.09001 * 108.94743 * 101.53156 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3026 0.0012 12 8 0.7912 -5.5023 0.0021 13 7 2.8443 -6.3430 0.0008 14 6 4.2643 -6.0714 0.0003 15 6 4.7716 -5.9558 1.4589 16 6 4.7742 -7.2772 2.1051 17 6 3.3948 -7.9161 2.2347 18 1 2.6507 -7.1409 2.4174 19 7 3.3980 -8.8636 3.3519 20 6 2.2466 -9.1621 3.9857 21 8 1.2070 -8.6501 3.6277 22 6 2.2507 -10.1321 5.1391 23 6 0.8268 -10.2936 5.6748 24 6 0.5552 -9.8348 7.1088 25 6 0.6004 -11.3287 6.7785 26 6 3.0595 -8.6454 0.9571 27 6 2.2942 -7.7127 0.0020 28 1 -0.4850 0.8400 0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 4.4547 -5.1358 -0.5254 32 1 4.7886 -6.8837 -0.5030 33 1 4.1190 -5.2832 2.0156 34 1 5.7844 -5.5528 1.4577 35 1 5.2028 -7.1740 3.1020 36 1 5.4118 -7.9447 1.5255 37 1 4.2294 -9.2731 3.6383 38 1 2.6227 -11.0987 4.7995 39 1 2.8964 -9.7522 5.9309 40 1 0.0308 -10.1560 4.9430 41 1 1.3911 -9.4182 7.6708 42 1 -0.4196 -9.3956 7.3206 43 1 -0.3446 -11.8718 6.7730 44 1 1.4659 -11.8949 7.1226 45 1 3.9806 -8.9774 0.4780 46 1 2.4412 -9.5130 1.1877 47 1 1.2486 -7.6739 0.3076 48 1 2.3524 -8.1184 -1.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001065728419.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:56 Heat of formation + Delta-G solvation = -79.335214 kcal Electronic energy + Delta-G solvation = -27570.632791 eV Core-core repulsion = 23751.150076 eV Total energy + Delta-G solvation = -3819.482715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63450 -40.72217 -38.81032 -37.85786 -36.07445 -34.59859 -33.97162 -33.32692 -30.91673 -29.94666 -27.73942 -27.45718 -25.97819 -23.27019 -23.20227 -22.33145 -21.70303 -20.87962 -20.29447 -19.44132 -18.25812 -18.20081 -17.54802 -17.27309 -16.89321 -16.66430 -16.42562 -16.06293 -15.82097 -15.33594 -15.21475 -14.99096 -14.79811 -14.54890 -14.43129 -14.21145 -13.88581 -13.56244 -13.43834 -13.23282 -13.16511 -12.89681 -12.80695 -12.61003 -12.44499 -12.34412 -12.29221 -12.00036 -11.73046 -11.67573 -11.61351 -11.32466 -11.14995 -10.98881 -10.86400 -10.73351 -10.27102 -10.16413 -9.63150 -8.70082 -8.35218 -6.14749 1.24386 1.42059 1.44933 1.54791 1.57394 1.67788 2.09924 2.16751 2.26571 2.91121 2.98669 3.25440 3.56268 3.71358 3.75000 3.79786 3.83965 3.98178 4.02473 4.08580 4.09606 4.16570 4.24315 4.33437 4.42275 4.48035 4.55325 4.61453 4.65915 4.70869 4.77375 4.78318 4.80467 4.90560 4.97223 5.02995 5.11100 5.14005 5.23119 5.24700 5.32748 5.37395 5.40175 5.56107 5.65355 6.18776 6.29995 6.61999 7.05182 7.15560 7.35595 8.74363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.002513 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.013390 B =11138.984589 C =12063.645501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 1.002 2.998 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.085 0.915 9 S -0.164 6.164 10 C -0.118 4.118 11 C 0.522 3.478 12 O -0.572 6.572 13 N -0.596 5.596 14 C 0.097 3.903 15 C -0.137 4.137 16 C -0.115 4.115 17 C 0.144 3.856 18 H 0.036 0.964 19 N -0.712 5.712 20 C 0.502 3.498 21 O -0.591 6.591 22 C -0.096 4.096 23 C -0.165 4.165 24 C -0.191 4.191 25 C -0.157 4.157 26 C -0.123 4.123 27 C 0.115 3.885 28 H 0.271 0.729 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.035 0.965 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.120 0.880 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -25.642 9.353 33.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.690 4.690 8 H 0.103 0.897 9 S 0.063 5.937 10 C -0.269 4.269 11 C 0.310 3.690 12 O -0.451 6.451 13 N -0.330 5.330 14 C -0.025 4.025 15 C -0.176 4.176 16 C -0.153 4.153 17 C 0.039 3.961 18 H 0.054 0.946 19 N -0.365 5.365 20 C 0.290 3.710 21 O -0.471 6.471 22 C -0.136 4.136 23 C -0.184 4.184 24 C -0.228 4.228 25 C -0.194 4.194 26 C -0.162 4.162 27 C -0.008 4.008 28 H 0.080 0.920 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.053 0.947 34 H 0.131 0.869 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.258 0.742 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.570 -25.536 9.099 31.771 hybrid contribution 0.886 1.446 0.058 1.697 sum 17.456 -24.090 9.157 31.127 Atomic orbital electron populations 1.70206 1.08139 1.28611 1.48060 1.26205 0.95990 1.03522 0.93718 0.84907 0.78188 0.75691 0.78893 1.19106 1.20412 1.17921 1.23173 0.95316 0.91626 1.58837 0.89682 1.85723 1.11177 0.99741 1.97026 1.23377 1.03061 0.94100 1.06325 1.20358 0.86200 0.87208 0.75259 1.90681 1.17873 1.85951 1.50567 1.47710 1.07420 1.04930 1.72927 1.22026 0.78493 1.04246 0.97721 1.21276 1.03220 0.97561 0.95541 1.20658 0.94219 0.97305 1.03092 1.20365 0.98978 0.90815 0.85942 0.94593 1.45994 1.10557 1.46004 1.33951 1.21410 0.83168 0.82296 0.84120 1.90777 1.33871 1.54609 1.67870 1.21239 0.96781 0.99794 0.95749 1.22026 0.97652 1.06479 0.92232 1.23136 1.03322 0.98528 0.97780 1.23091 1.04275 0.91373 1.00661 1.22085 1.02100 0.97302 0.94726 1.21754 0.97766 0.80699 1.00552 0.92029 0.87706 0.87025 0.89740 0.86327 0.94659 0.86909 0.90186 0.87704 0.74230 0.85363 0.86315 0.90049 0.87486 0.90039 0.88631 0.86216 0.87100 0.91157 0.93667 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.92 13.22 21.65 0.29 -57.63 16 2 C 0.01 0.58 5.49 84.86 0.47 1.05 16 3 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -31.76 9.50 67.95 0.65 -31.12 16 8 H 0.09 4.58 7.80 -2.91 -0.02 4.55 16 9 S -0.16 -9.63 20.57 -56.49 -1.16 -10.79 16 10 C -0.12 -5.00 4.65 71.23 0.33 -4.67 16 11 C 0.52 21.64 7.64 87.66 0.67 22.31 16 12 O -0.57 -30.04 15.14 -3.03 -0.05 -30.09 16 13 N -0.60 -17.05 2.24 -818.33 -1.83 -18.88 16 14 C 0.10 1.75 5.17 87.37 0.45 2.20 16 15 C -0.14 -2.17 5.62 29.40 0.17 -2.00 16 16 C -0.12 -1.36 4.69 28.62 0.13 -1.23 16 17 C 0.14 2.83 2.07 44.16 0.09 2.92 16 18 H 0.04 1.17 6.91 -2.39 -0.02 1.15 16 19 N -0.71 -10.67 4.93 -446.51 -2.20 -12.87 16 20 C 0.50 10.95 7.66 87.66 0.67 11.62 16 21 O -0.59 -21.06 15.22 -3.04 -0.05 -21.10 16 22 C -0.10 -1.22 5.98 29.85 0.18 -1.04 16 23 C -0.17 -3.01 5.41 -10.80 -0.06 -3.07 16 24 C -0.19 -3.12 10.18 30.62 0.31 -2.81 16 25 C -0.16 -1.94 10.25 30.62 0.31 -1.63 16 26 C -0.12 -2.22 5.39 30.20 0.16 -2.05 16 27 C 0.11 3.03 6.10 86.47 0.53 3.56 16 28 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 29 H 0.10 4.09 7.09 -2.39 -0.02 4.07 16 30 H 0.11 4.19 7.30 -2.39 -0.02 4.17 16 31 H 0.08 1.57 6.25 -2.39 -0.01 1.56 16 32 H 0.12 1.22 8.07 -2.39 -0.02 1.20 16 33 H 0.03 0.83 7.28 -2.39 -0.02 0.82 16 34 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 0.78 8.04 -2.39 -0.02 0.76 16 36 H 0.10 0.53 7.36 -2.39 -0.02 0.51 16 37 H 0.42 2.42 8.60 -92.71 -0.80 1.62 16 38 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.12 0.92 7.88 -2.39 -0.02 0.90 16 40 H 0.08 2.11 7.31 -2.39 -0.02 2.09 16 41 H 0.11 1.42 8.03 -2.39 -0.02 1.40 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.11 1.08 7.32 -2.39 -0.02 1.06 16 46 H 0.07 1.41 7.86 -2.38 -0.02 1.39 16 47 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 48 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -93.66 395.20 2.25 -91.41 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.17 Total: 19.51 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.06 Total: -5.95 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.75 Total: -89.38 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -9.63 SS G_CDS: -1.16 Total: -10.79 kcal Total: -93.66 2.25 -91.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001065728419.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.077 kcal (2) G-P(sol) polarization free energy of solvation -93.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds