Wall clock time and date at job start Sat Apr 11 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47383 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47058 * 299.99847 * 3 2 1 6 6 H 1.48500 * 109.47175 * 59.99985 * 3 2 1 7 7 C 1.38657 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 179.97438 * 7 2 1 9 9 O 1.34811 * 119.99839 * 359.97438 * 7 2 1 10 10 C 1.35682 * 117.00214 * 185.05873 * 9 7 2 11 11 C 1.39027 * 119.94277 * 354.45058 * 10 9 7 12 12 C 1.37812 * 120.05176 * 180.02562 * 11 10 9 13 13 C 1.39472 * 119.94633 * 359.97438 * 12 11 10 14 14 C 1.48244 * 120.05132 * 180.02562 * 13 12 11 15 15 C 1.39397 * 119.73192 * 180.02562 * 14 13 12 16 16 C 1.38376 * 119.06330 * 179.72468 * 15 14 13 17 17 C 1.38807 * 118.51723 * 0.49228 * 16 15 14 18 18 C 1.50703 * 120.30908 * 179.77887 * 17 16 15 19 19 N 1.46899 * 109.47037 * 269.72381 * 18 17 16 20 20 C 1.47020 * 110.99785 * 46.32416 * 19 18 17 21 21 C 1.53097 * 109.25237 * 182.34866 * 20 19 18 22 22 O 1.43010 * 109.29615 * 303.21360 * 21 20 19 23 23 C 1.43018 * 113.73880 * 58.65271 * 22 21 20 24 24 C 1.47020 * 110.99721 * 170.00238 * 19 18 17 25 25 C 1.38242 * 119.37747 * 359.50776 * 17 16 15 26 26 N 1.31764 * 120.89461 * 0.25235 * 25 17 16 27 27 C 1.39474 * 119.89385 * 0.27952 * 13 12 11 28 28 C 1.37813 * 119.93955 * 359.42111 * 27 13 12 29 29 H 0.96999 * 119.99633 * 359.97438 * 1 2 3 30 30 H 1.08002 * 119.97163 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.02207 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.47113 * 359.97438 * 15 14 13 33 33 H 1.08001 * 120.74086 * 180.25261 * 16 15 14 34 34 H 1.09007 * 109.46830 * 149.72798 * 18 17 16 35 35 H 1.08996 * 109.47366 * 29.72583 * 18 17 16 36 36 H 1.08998 * 109.47234 * 62.43499 * 20 19 18 37 37 H 1.09003 * 109.54187 * 302.30183 * 20 19 18 38 38 H 1.08998 * 109.50387 * 183.26184 * 21 20 19 39 39 H 1.09001 * 109.50972 * 63.17588 * 21 20 19 40 40 H 1.09002 * 109.50871 * 61.26242 * 23 22 21 41 41 H 1.09003 * 109.51263 * 181.35085 * 23 22 21 42 42 H 1.09002 * 109.50574 * 57.67034 * 24 19 18 43 43 H 1.09001 * 109.50583 * 297.54156 * 24 19 18 44 44 H 1.07995 * 119.54711 * 180.22776 * 25 17 16 45 45 H 1.07993 * 120.02879 * 179.72831 * 27 13 12 46 46 H 1.08005 * 119.97223 * 180.29803 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2126 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0696 -3.5039 0.1055 11 6 3.4581 -3.4358 0.0915 12 6 4.2068 -4.5879 0.1985 13 6 3.5703 -5.8228 0.3216 14 6 4.3733 -7.0635 0.4374 15 6 3.7303 -8.2943 0.5595 16 6 4.4934 -9.4442 0.6610 17 6 5.8762 -9.3252 0.6475 18 6 6.7462 -10.5506 0.7605 19 7 7.0366 -10.8160 2.1759 20 6 5.8161 -10.7242 2.9904 21 6 6.1733 -10.9491 4.4620 22 8 6.8248 -12.2144 4.6022 23 6 8.0178 -12.3372 3.8231 24 6 7.6793 -12.1275 2.3448 25 6 6.4480 -8.0727 0.5237 26 7 5.6983 -6.9937 0.4237 27 6 2.1772 -5.8891 0.3301 28 6 1.4330 -4.7336 0.2289 29 1 -0.4849 0.8401 0.0004 30 1 3.9505 -2.4793 -0.0042 31 1 5.2854 -4.5344 0.1880 32 1 2.6519 -8.3500 0.5707 33 1 4.0234 -10.4123 0.7526 34 1 7.6798 -10.3842 0.2230 35 1 6.2263 -11.4063 0.3297 36 1 5.1059 -11.4855 2.6677 37 1 5.3713 -9.7363 2.8706 38 1 5.2638 -10.9395 5.0628 39 1 6.8410 -10.1565 4.7998 40 1 8.7395 -11.5849 4.1415 41 1 8.4429 -13.3312 3.9624 42 1 8.5942 -12.1634 1.7532 43 1 6.9992 -12.9117 2.0124 44 1 7.5236 -7.9773 0.5091 45 1 1.6821 -6.8445 0.4208 46 1 0.3542 -4.7838 0.2403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:07 Heat of formation + Delta-G solvation = -0.653022 kcal Electronic energy + Delta-G solvation = -27821.955586 eV Core-core repulsion = 23870.440836 eV Total energy + Delta-G solvation = -3951.514751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.57852 -39.62597 -38.90960 -36.79431 -36.05904 -32.85129 -32.46596 -31.91732 -31.44103 -30.25842 -29.37428 -27.45197 -25.62610 -24.57813 -24.45377 -23.69726 -22.25170 -21.55316 -20.65719 -20.59161 -18.11766 -17.44593 -17.00429 -16.61732 -16.37157 -16.29124 -15.76263 -15.40549 -15.02355 -14.81854 -14.56782 -14.36437 -14.34711 -14.04489 -13.82629 -13.57416 -13.39506 -13.09375 -12.87404 -12.69927 -12.56708 -12.46514 -12.01794 -11.77949 -11.76293 -11.49292 -11.38125 -11.05248 -11.01470 -10.92470 -10.67809 -10.49483 -10.06297 -9.75514 -9.50477 -9.25437 -9.19981 -8.83707 -8.65065 -8.28948 -7.10913 -6.58775 -4.14353 0.86800 1.35564 2.18731 2.34814 3.06703 3.08568 3.14339 3.40002 3.54814 3.87235 3.98621 4.32286 4.48747 4.56496 4.59870 4.62026 4.71041 4.78107 4.83251 4.88928 4.95496 4.97423 5.00121 5.13776 5.17043 5.26560 5.30405 5.37754 5.40043 5.53235 5.56150 5.60175 5.69662 5.72756 5.87445 6.04637 6.15684 6.17837 6.36918 6.52397 6.55488 6.56578 6.72694 6.77935 6.84831 6.97620 7.17139 7.29031 7.33136 7.69308 7.87144 8.18996 8.86580 9.53902 10.58260 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025237 B = 0.001838 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.218792 B =15231.139371 C =15322.843827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.040 3.960 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.097 0.903 9 O -0.167 6.167 10 C 0.166 3.834 11 C -0.244 4.244 12 C -0.021 4.021 13 C -0.170 4.170 14 C 0.216 3.784 15 C -0.185 4.185 16 C -0.062 4.062 17 C -0.176 4.176 18 C 0.107 3.893 19 N -0.532 5.532 20 C 0.016 3.984 21 C 0.063 3.937 22 O -0.387 6.387 23 C 0.064 3.936 24 C 0.017 3.983 25 C 0.132 3.868 26 N -0.492 5.492 27 C -0.047 4.047 28 C -0.198 4.198 29 H 0.272 0.728 30 H 0.131 0.869 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.042 0.958 44 H 0.151 0.849 45 H 0.116 0.884 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.119 -22.372 3.853 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.114 0.886 9 O -0.068 6.068 10 C 0.110 3.890 11 C -0.263 4.263 12 C -0.040 4.040 13 C -0.172 4.172 14 C 0.081 3.919 15 C -0.205 4.205 16 C -0.088 4.088 17 C -0.178 4.178 18 C -0.021 4.021 19 N -0.257 5.257 20 C -0.112 4.112 21 C -0.014 4.014 22 O -0.306 6.306 23 C -0.014 4.014 24 C -0.111 4.111 25 C -0.027 4.027 26 N -0.201 5.201 27 C -0.066 4.066 28 C -0.217 4.217 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.168 0.832 45 H 0.134 0.866 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.330 -21.108 4.031 25.288 hybrid contribution -0.428 -0.456 -0.480 0.788 sum 12.902 -21.565 3.552 25.379 Atomic orbital electron populations 1.70044 1.06070 1.27965 1.44778 1.25368 0.95902 0.99079 0.96191 0.85598 0.79262 0.79956 0.78381 1.18876 1.20000 1.19977 1.21495 0.92103 0.80599 1.52472 0.88564 1.83940 1.34828 1.11722 1.76317 1.19545 0.90366 0.87909 0.91150 1.21160 0.93596 0.99148 1.12407 1.20901 0.99312 0.90824 0.92948 1.17946 0.91945 0.90884 1.16414 1.19923 0.88985 0.92414 0.90541 1.22029 1.01303 0.92592 1.04527 1.21323 0.93081 0.98484 0.95922 1.20512 0.94188 0.96218 1.06911 1.20911 0.98623 0.94087 0.88468 1.62344 1.25784 1.29598 1.07976 1.22879 0.91585 1.02686 0.94072 1.22699 0.97823 0.85827 0.95061 1.87983 1.39760 1.35427 1.67422 1.22654 0.87374 1.02216 0.89109 1.22809 1.00082 0.89892 0.98327 1.22521 0.99752 0.86976 0.93421 1.67756 1.06069 1.32083 1.14190 1.20668 0.92236 0.96994 0.96750 1.20101 0.99671 0.90034 1.11894 0.91789 0.85167 0.86061 0.84776 0.85774 0.89513 0.93946 0.94056 0.88918 0.88392 0.92150 0.92181 0.88497 0.89489 0.93936 0.83181 0.86618 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 13.67 55.48 0.76 -23.56 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.96 29.55 -169.99 -5.02 14.93 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.60 9.48 30.89 0.29 -10.31 16 8 H 0.10 2.42 5.19 -52.49 -0.27 2.15 16 9 O -0.17 -4.61 9.75 0.31 0.00 -4.61 16 10 C 0.17 3.91 6.65 -39.00 -0.26 3.66 16 11 C -0.24 -5.27 9.15 -39.44 -0.36 -5.63 16 12 C -0.02 -0.40 9.56 -39.28 -0.38 -0.78 16 13 C -0.17 -3.07 5.88 -104.86 -0.62 -3.68 16 14 C 0.22 3.43 6.73 -82.95 -0.56 2.88 16 15 C -0.18 -2.39 9.46 -39.10 -0.37 -2.76 16 16 C -0.06 -0.67 8.05 -39.32 -0.32 -0.99 16 17 C -0.18 -1.87 4.14 -104.41 -0.43 -2.30 16 18 C 0.11 0.89 5.45 -4.97 -0.03 0.86 16 19 N -0.53 -4.60 4.87 -235.73 -1.15 -5.75 16 20 C 0.02 0.14 4.67 -3.71 -0.02 0.13 16 21 C 0.06 0.55 7.01 37.21 0.26 0.81 16 22 O -0.39 -3.76 10.83 -35.23 -0.38 -4.14 16 23 C 0.06 0.46 7.01 37.21 0.26 0.72 16 24 C 0.02 0.12 5.63 -3.71 -0.02 0.10 16 25 C 0.13 1.65 10.85 -17.58 -0.19 1.46 16 26 N -0.49 -7.69 9.43 -9.79 -0.09 -7.79 16 27 C -0.05 -0.82 9.41 -39.28 -0.37 -1.19 16 28 C -0.20 -4.02 9.98 -39.45 -0.39 -4.42 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.13 2.80 5.62 -52.49 -0.30 2.51 16 31 H 0.12 2.20 7.53 -52.49 -0.40 1.80 16 32 H 0.13 1.52 6.19 -52.49 -0.32 1.19 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.04 0.33 8.03 -51.93 -0.42 -0.09 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.95 5.93 -51.93 -0.31 0.65 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.12 1.61 6.17 -52.49 -0.32 1.29 16 46 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -30.83 376.25 -9.92 -40.76 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.12 Total: 4.97 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.59 Total: -20.49 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.48 Total: -37.09 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.38 Total: -8.74 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.83 -9.92 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.103 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds