Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47032 * 299.99595 * 3 2 1 6 6 H 1.48495 * 109.47361 * 59.99784 * 3 2 1 7 7 C 1.38813 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99987 * 179.97438 * 9 7 2 11 11 H 1.09010 * 109.78754 * 35.49464 * 10 9 7 12 12 C 1.53432 * 109.63529 * 155.98560 * 10 9 7 13 13 C 1.53111 * 109.32361 * 192.04787 * 12 10 9 14 14 C 1.52458 * 109.68324 * 282.97513 * 13 12 10 15 15 C 1.53492 * 109.13424 * 316.06372 * 14 13 12 16 16 C 1.53618 * 108.46063 * 114.21828 * 15 14 13 17 17 N 1.47135 * 107.51720 * 290.23835 * 16 15 14 18 18 C 1.34780 * 120.18785 * 252.15772 * 17 16 15 19 19 O 1.21279 * 119.99775 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00098 * 359.97438 * 18 17 16 21 21 C 1.52994 * 109.47146 * 180.02562 * 20 18 17 22 22 F 1.39897 * 109.47243 * 300.00063 * 21 20 18 23 23 F 1.39900 * 109.47246 * 60.00207 * 21 20 18 24 24 C 1.53003 * 109.47151 * 179.97438 * 21 20 18 25 25 F 1.39900 * 109.47143 * 180.02562 * 24 21 20 26 26 F 1.39897 * 109.47397 * 300.00334 * 24 21 20 27 27 C 1.46057 * 119.62291 * 72.13151 * 17 16 15 28 28 H 0.96999 * 120.00188 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99864 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.49681 * 312.00682 * 12 10 9 31 31 H 1.09005 * 109.49060 * 72.09223 * 12 10 9 32 32 H 1.08999 * 109.43562 * 162.90753 * 13 12 10 33 33 H 1.08997 * 109.39643 * 43.01332 * 13 12 10 34 34 H 1.08993 * 109.53204 * 196.16782 * 14 13 12 35 35 H 1.08996 * 109.53219 * 75.95762 * 14 13 12 36 36 H 1.09001 * 109.63804 * 354.52549 * 15 14 13 37 37 H 1.09003 * 109.81219 * 234.01186 * 15 14 13 38 38 H 1.09008 * 109.84743 * 170.73638 * 16 15 14 39 39 H 1.08993 * 109.90697 * 49.77868 * 16 15 14 40 40 H 1.09003 * 109.46901 * 300.00170 * 20 18 17 41 41 H 1.08998 * 109.47223 * 60.00093 * 20 18 17 42 42 H 1.08998 * 109.46922 * 60.00226 * 24 21 20 43 43 H 1.09003 * 109.36241 * 126.74152 * 27 17 16 44 44 H 1.08997 * 109.25581 * 7.06892 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9659 -3.5587 0.5961 12 6 1.1727 -4.7633 0.5886 13 6 2.0277 -6.0030 0.8651 14 6 2.3077 -6.7356 -0.4423 15 6 1.0146 -6.8061 -1.2663 16 6 1.2033 -5.9682 -2.5400 17 7 1.2494 -4.5539 -2.1369 18 6 0.2125 -3.7373 -2.4099 19 8 0.2539 -2.5722 -2.0757 20 6 -0.9984 -4.2719 -3.1304 21 6 -2.0201 -3.1480 -3.3139 22 9 -2.4023 -2.6561 -2.0613 23 9 -1.4482 -2.1160 -4.0656 24 6 -3.2492 -3.6906 -4.0460 25 9 -4.1832 -2.6628 -4.2143 26 9 -2.8666 -4.1823 -5.2986 27 6 2.4249 -4.0401 -1.4388 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 0.7253 -4.4149 1.5196 31 1 0.3855 -5.0153 -0.1219 32 1 1.4948 -6.6666 1.5459 33 1 2.9706 -5.6985 1.3192 34 1 2.6576 -7.7451 -0.2266 35 1 3.0698 -6.1974 -1.0057 36 1 0.1861 -6.4045 -0.6830 37 1 0.8046 -7.8411 -1.5364 38 1 0.3661 -6.1326 -3.2185 39 1 2.1367 -6.2439 -3.0307 40 1 -0.7006 -4.6548 -4.1065 41 1 -1.4437 -5.0763 -2.5450 42 1 -3.6949 -4.4949 -3.4607 43 1 2.8006 -3.1610 -1.9624 44 1 3.1977 -4.8087 -1.4224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264122221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = -184.029975 kcal Electronic energy + Delta-G solvation = -33291.672394 eV Core-core repulsion = 28359.579857 eV Total energy + Delta-G solvation = -4932.092537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.73672 -48.38744 -47.41951 -46.71630 -40.12741 -37.30527 -34.77374 -33.62878 -32.58537 -31.77476 -29.37851 -28.24934 -26.55307 -26.28977 -23.68983 -22.78989 -22.36362 -20.55212 -19.97614 -18.56235 -18.39388 -17.93248 -17.48351 -16.84930 -16.63258 -16.28464 -16.24170 -15.48622 -15.15371 -14.96091 -14.40433 -14.35739 -14.17969 -14.09690 -13.70542 -13.69069 -13.44366 -13.30477 -13.11221 -13.05056 -12.82886 -12.75677 -12.66855 -12.05388 -11.89054 -11.73618 -11.66400 -11.56753 -10.88595 -10.86000 -10.75402 -10.66982 -10.57077 -10.29357 -10.07548 -10.02019 -9.61983 -9.31113 -9.09162 -8.66167 -8.04599 -6.49919 -5.41095 -2.66738 2.64452 3.21528 3.35453 3.59704 3.62040 3.63883 3.67302 3.75229 3.92993 4.05911 4.63409 4.68137 4.75601 4.84528 4.89877 4.91609 5.11534 5.18756 5.32267 5.37375 5.42379 5.42930 5.56946 5.73773 5.76103 5.83431 5.87650 6.05002 6.18573 6.20923 6.28301 6.34586 6.42859 6.66817 6.77565 6.87470 6.96048 7.23019 7.87957 7.94572 8.72684 8.88470 9.87031 10.49097 10.82629 11.80219 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.006327 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.871605 B = 4424.068789 C = 6975.321218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.892 3.108 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.061 0.939 9 N -0.700 5.700 10 C 0.165 3.835 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.608 5.608 18 C 0.481 3.519 19 O -0.419 6.419 20 C -0.192 4.192 21 C 0.273 3.727 22 F -0.156 7.156 23 F -0.169 7.169 24 C 0.233 3.767 25 F -0.183 7.183 26 F -0.185 7.185 27 C 0.093 3.907 28 H 0.247 0.753 29 H 0.388 0.612 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.067 0.933 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.028 -19.731 -7.023 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.725 3.275 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.079 0.921 9 N -0.342 5.342 10 C 0.053 3.947 11 H 0.068 0.932 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.165 4.165 15 C -0.186 4.186 16 C -0.018 4.018 17 N -0.345 5.345 18 C 0.263 3.737 19 O -0.285 6.285 20 C -0.233 4.233 21 C 0.235 3.765 22 F -0.137 7.137 23 F -0.149 7.149 24 C 0.178 3.822 25 F -0.164 7.164 26 F -0.167 7.167 27 C -0.032 4.032 28 H 0.057 0.943 29 H 0.224 0.776 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.085 0.915 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.913 -18.796 -6.836 20.212 hybrid contribution 0.164 0.957 -0.285 1.012 sum -2.750 -17.839 -7.121 19.403 Atomic orbital electron populations 1.69693 1.04705 1.24381 1.57247 1.24599 0.95240 0.96850 1.03449 0.86348 0.78695 0.85616 0.76862 1.21020 1.22323 1.22401 1.19046 0.90257 0.84433 1.42432 0.92122 1.42391 1.05865 0.98718 1.87198 1.20777 0.94791 0.87137 0.92018 0.93159 1.22198 0.99109 0.94758 1.01093 1.21468 1.00243 0.96960 0.96576 1.21881 0.97682 0.99799 0.97094 1.22493 0.99592 0.99290 0.97219 1.21939 1.02054 0.81741 0.96042 1.47806 1.18556 1.08759 1.59398 1.19814 0.83748 0.87825 0.82267 1.91259 1.77644 1.14110 1.45508 1.22873 0.96784 0.98227 1.05416 1.21451 0.90834 0.85922 0.78289 1.93212 1.91429 1.88861 1.40186 1.93143 1.85533 1.60727 1.75522 1.22929 0.87481 0.88636 0.83171 1.93074 1.66186 1.61274 1.95856 1.93032 1.91717 1.87789 1.44117 1.22746 0.85629 0.97987 0.96843 0.94269 0.77582 0.92368 0.91120 0.92867 0.92133 0.92764 0.90805 0.90136 0.91794 0.90714 0.91084 0.86145 0.86394 0.84302 0.91484 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.29 13.06 55.49 0.72 -28.57 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.89 23.92 29.55 -169.99 -5.02 18.90 16 4 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 7 C -0.23 -6.64 9.80 -15.06 -0.15 -6.79 16 8 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 9 N -0.70 -17.90 3.03 -53.00 -0.16 -18.06 16 10 C 0.16 3.20 2.68 -67.50 -0.18 3.02 16 11 H 0.05 1.01 7.84 -51.92 -0.41 0.60 16 12 C -0.13 -2.13 4.92 -26.45 -0.13 -2.26 16 13 C -0.11 -1.38 5.67 -26.95 -0.15 -1.54 16 14 C -0.13 -1.26 5.48 -26.75 -0.15 -1.41 16 15 C -0.15 -1.33 5.60 -26.16 -0.15 -1.47 16 16 C 0.11 1.01 5.83 -3.37 -0.02 0.99 16 17 N -0.61 -8.85 1.72 -172.90 -0.30 -9.15 16 18 C 0.48 8.40 6.62 -10.98 -0.07 8.32 16 19 O -0.42 -10.07 11.01 5.56 0.06 -10.01 16 20 C -0.19 -2.37 3.53 -27.89 -0.10 -2.46 16 21 C 0.27 4.21 1.40 -26.73 -0.04 4.17 16 22 F -0.16 -3.01 16.12 2.25 0.04 -2.98 16 23 F -0.17 -3.32 16.10 2.25 0.04 -3.29 16 24 C 0.23 2.60 4.83 37.16 0.18 2.78 16 25 F -0.18 -2.57 17.30 2.25 0.04 -2.53 16 26 F -0.19 -2.06 16.80 2.25 0.04 -2.02 16 27 C 0.09 1.57 4.93 -4.07 -0.02 1.55 16 28 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 29 H 0.39 10.92 6.34 -40.82 -0.26 10.66 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.10 3.68 -51.93 -0.19 0.91 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.77 4.49 -51.93 -0.23 0.54 16 36 H 0.08 0.84 5.45 -51.93 -0.28 0.56 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.55 5.98 -51.92 -0.31 0.23 16 39 H 0.07 0.61 7.97 -51.93 -0.41 0.19 16 40 H 0.12 1.15 7.25 -51.93 -0.38 0.77 16 41 H 0.12 1.00 8.01 -51.93 -0.42 0.58 16 42 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 44 H 0.07 0.92 5.05 -51.93 -0.26 0.66 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -36.91 347.61 -6.02 -42.92 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.64 Total: 4.88 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.07 Total: 4.66 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.27 Total: -55.78 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.06 Total: -10.01 kcal Atomic # 9 Polarization: -10.96 SS G_CDS: 0.15 Total: -10.81 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -5.02 Total: 18.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.91 -6.02 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264122221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.105 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds