Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46936 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47032 * 299.99595 * 3 2 1 6 6 H 1.48495 * 109.47361 * 59.99784 * 3 2 1 7 7 C 1.38813 * 120.00474 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99996 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99584 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99987 * 179.97438 * 9 7 2 11 11 H 1.09010 * 109.78754 * 35.49464 * 10 9 7 12 12 C 1.53432 * 109.63529 * 155.98560 * 10 9 7 13 13 C 1.53111 * 109.32361 * 192.04787 * 12 10 9 14 14 C 1.52458 * 109.68324 * 282.97513 * 13 12 10 15 15 C 1.53492 * 109.13424 * 316.06372 * 14 13 12 16 16 C 1.53618 * 108.46063 * 114.21828 * 15 14 13 17 17 N 1.47135 * 107.51720 * 290.23835 * 16 15 14 18 18 C 1.34780 * 120.18785 * 252.15772 * 17 16 15 19 19 O 1.21279 * 119.99775 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00098 * 359.97438 * 18 17 16 21 21 C 1.52994 * 109.47146 * 180.02562 * 20 18 17 22 22 F 1.39897 * 109.47243 * 300.00063 * 21 20 18 23 23 F 1.39900 * 109.47246 * 60.00207 * 21 20 18 24 24 C 1.53003 * 109.47151 * 179.97438 * 21 20 18 25 25 F 1.39900 * 109.47143 * 180.02562 * 24 21 20 26 26 F 1.39897 * 109.47397 * 300.00334 * 24 21 20 27 27 C 1.46057 * 119.62291 * 72.13151 * 17 16 15 28 28 H 0.96999 * 120.00188 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99864 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.49681 * 312.00682 * 12 10 9 31 31 H 1.09005 * 109.49060 * 72.09223 * 12 10 9 32 32 H 1.08999 * 109.43562 * 162.90753 * 13 12 10 33 33 H 1.08997 * 109.39643 * 43.01332 * 13 12 10 34 34 H 1.08993 * 109.53204 * 196.16782 * 14 13 12 35 35 H 1.08996 * 109.53219 * 75.95762 * 14 13 12 36 36 H 1.09001 * 109.63804 * 354.52549 * 15 14 13 37 37 H 1.09003 * 109.81219 * 234.01186 * 15 14 13 38 38 H 1.09008 * 109.84743 * 170.73638 * 16 15 14 39 39 H 1.08993 * 109.90697 * 49.77868 * 16 15 14 40 40 H 1.09003 * 109.46901 * 300.00170 * 20 18 17 41 41 H 1.08998 * 109.47223 * 60.00093 * 20 18 17 42 42 H 1.08998 * 109.46922 * 60.00226 * 24 21 20 43 43 H 1.09003 * 109.36241 * 126.74152 * 27 17 16 44 44 H 1.08997 * 109.25581 * 7.06892 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9659 -3.5587 0.5961 12 6 1.1727 -4.7633 0.5886 13 6 2.0277 -6.0030 0.8651 14 6 2.3077 -6.7356 -0.4423 15 6 1.0146 -6.8061 -1.2663 16 6 1.2033 -5.9682 -2.5400 17 7 1.2494 -4.5539 -2.1369 18 6 0.2125 -3.7373 -2.4099 19 8 0.2539 -2.5722 -2.0757 20 6 -0.9984 -4.2719 -3.1304 21 6 -2.0201 -3.1480 -3.3139 22 9 -2.4023 -2.6561 -2.0613 23 9 -1.4482 -2.1160 -4.0656 24 6 -3.2492 -3.6906 -4.0460 25 9 -4.1832 -2.6628 -4.2143 26 9 -2.8666 -4.1823 -5.2986 27 6 2.4249 -4.0401 -1.4388 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 0.7253 -4.4149 1.5196 31 1 0.3855 -5.0153 -0.1219 32 1 1.4948 -6.6666 1.5459 33 1 2.9706 -5.6985 1.3192 34 1 2.6576 -7.7451 -0.2266 35 1 3.0698 -6.1974 -1.0057 36 1 0.1861 -6.4045 -0.6830 37 1 0.8046 -7.8411 -1.5364 38 1 0.3661 -6.1326 -3.2185 39 1 2.1367 -6.2439 -3.0307 40 1 -0.7006 -4.6548 -4.1065 41 1 -1.4437 -5.0763 -2.5450 42 1 -3.6949 -4.4949 -3.4607 43 1 2.8006 -3.1610 -1.9624 44 1 3.1977 -4.8087 -1.4224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264122221.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = -208.900461 kcal Electronic energy + Delta-G solvation = -33292.750859 eV Core-core repulsion = 28359.579857 eV Total energy + Delta-G solvation = -4933.171002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.78343 -49.53288 -48.44877 -47.97346 -41.34835 -38.56390 -36.38449 -34.89474 -33.86375 -33.38008 -31.02354 -29.38545 -27.82316 -27.45343 -25.43026 -24.05366 -23.42808 -21.89743 -21.05000 -19.74971 -19.42309 -19.06253 -18.91064 -18.50516 -17.71723 -17.44163 -17.39256 -16.79339 -16.63358 -16.26685 -15.84862 -15.53055 -15.47784 -15.13558 -15.12120 -14.78816 -14.67191 -14.64005 -14.43558 -14.37633 -14.27307 -13.83435 -13.80519 -13.21891 -13.13532 -13.00414 -12.94545 -12.85789 -12.75617 -12.50966 -12.22620 -11.88273 -11.82834 -11.69552 -11.64049 -11.39431 -11.12341 -10.90109 -10.78415 -10.35026 -9.43733 -8.54387 -7.71771 -4.93239 1.40654 1.43504 1.51275 1.65208 1.98355 2.24760 2.63800 2.68695 2.81226 3.03461 3.05482 3.58123 3.70525 3.78692 3.84707 3.93865 4.07578 4.14042 4.26604 4.32690 4.34418 4.37580 4.43020 4.57246 4.65787 4.73256 4.81509 4.93726 5.01561 5.06962 5.17402 5.24001 5.31923 5.49347 5.54072 5.58493 5.63149 5.72467 5.95458 6.44298 6.70832 7.52918 7.65338 8.42409 8.60704 9.50428 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008585 B = 0.006327 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.871605 B = 4424.068789 C = 6975.321218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.074 4.074 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.308 1.308 6 H -0.296 1.296 7 C -0.215 4.215 8 H 0.061 0.939 9 N -0.709 5.709 10 C 0.154 3.846 11 H 0.040 0.960 12 C -0.122 4.122 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.143 4.143 16 C 0.098 3.902 17 N -0.602 5.602 18 C 0.468 3.532 19 O -0.499 6.499 20 C -0.178 4.178 21 C 0.247 3.753 22 F -0.188 7.188 23 F -0.205 7.205 24 C 0.244 3.756 25 F -0.203 7.203 26 F -0.182 7.182 27 C 0.106 3.894 28 H 0.235 0.765 29 H 0.373 0.627 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.204 0.796 43 H 0.019 0.981 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.655 -24.412 -8.085 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.267 4.267 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.237 1.237 6 H -0.224 1.224 7 C -0.348 4.348 8 H 0.079 0.921 9 N -0.349 5.349 10 C 0.044 3.956 11 H 0.057 0.943 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.180 4.180 16 C -0.024 4.024 17 N -0.337 5.337 18 C 0.253 3.747 19 O -0.371 6.371 20 C -0.218 4.218 21 C 0.209 3.791 22 F -0.169 7.169 23 F -0.186 7.186 24 C 0.190 3.810 25 F -0.185 7.185 26 F -0.163 7.163 27 C -0.019 4.019 28 H 0.044 0.956 29 H 0.207 0.793 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.174 0.826 41 H 0.185 0.815 42 H 0.220 0.780 43 H 0.037 0.963 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.477 -23.591 -7.913 25.005 hybrid contribution 0.148 2.258 0.036 2.264 sum -2.329 -21.332 -7.877 22.859 Atomic orbital electron populations 1.69889 1.06110 1.23961 1.60106 1.25290 0.96053 0.99957 1.05368 0.85372 0.78393 0.81903 0.75996 1.19261 1.23697 1.22391 1.19392 0.90386 0.85930 1.39130 0.92065 1.42513 1.05315 0.99925 1.87132 1.21095 0.94525 0.86027 0.93926 0.94257 1.22101 0.99244 0.95176 0.99521 1.21422 0.99227 0.95333 0.98631 1.21877 0.98183 1.00619 0.95523 1.22452 0.98281 1.01107 0.96204 1.22400 1.04662 0.78043 0.97256 1.47903 1.16860 1.10911 1.58059 1.20756 0.85283 0.87208 0.81451 1.91241 1.79409 1.17578 1.48867 1.22929 0.93779 0.97820 1.07276 1.22426 0.93689 0.85689 0.77297 1.93137 1.91852 1.89460 1.42415 1.93057 1.86495 1.62826 1.76257 1.23269 0.85172 0.89131 0.83384 1.93033 1.66670 1.62780 1.95975 1.93040 1.91662 1.87441 1.44131 1.22302 0.87663 0.97710 0.94238 0.95553 0.79264 0.95306 0.90256 0.91257 0.92658 0.90181 0.91476 0.91497 0.88097 0.87358 0.89168 0.82593 0.81516 0.77996 0.96254 0.87410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.58 13.06 21.65 0.28 -64.30 16 2 C -0.07 -4.72 5.50 84.86 0.47 -4.25 16 3 Si 0.95 51.58 29.55 68.60 2.03 53.61 16 4 H -0.27 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.31 -17.20 7.11 99.48 0.71 -16.49 16 6 H -0.30 -15.86 7.11 99.48 0.71 -15.16 16 7 C -0.22 -13.01 9.80 84.03 0.82 -12.19 16 8 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.71 -38.02 3.03 -321.60 -0.97 -38.99 16 10 C 0.15 6.10 2.68 45.27 0.12 6.22 16 11 H 0.04 1.62 7.84 -2.38 -0.02 1.60 16 12 C -0.12 -3.84 4.92 30.78 0.15 -3.69 16 13 C -0.11 -2.32 5.67 30.45 0.17 -2.15 16 14 C -0.13 -1.87 5.48 30.58 0.17 -1.71 16 15 C -0.14 -1.74 5.60 30.97 0.17 -1.57 16 16 C 0.10 1.35 5.83 86.47 0.50 1.85 16 17 N -0.60 -16.28 1.72 -819.32 -1.41 -17.69 16 18 C 0.47 16.04 6.62 87.66 0.58 16.62 16 19 O -0.50 -25.13 11.01 -3.03 -0.03 -25.16 16 20 C -0.18 -3.85 3.53 29.85 0.11 -3.75 16 21 C 0.25 7.43 1.40 30.59 0.04 7.47 16 22 F -0.19 -7.49 16.12 44.97 0.73 -6.76 16 23 F -0.21 -8.44 16.10 44.97 0.72 -7.71 16 24 C 0.24 4.82 4.83 71.98 0.35 5.17 16 25 F -0.20 -5.55 17.30 44.97 0.78 -4.77 16 26 F -0.18 -3.43 16.80 44.97 0.76 -2.68 16 27 C 0.11 3.55 4.93 86.60 0.43 3.98 16 28 H 0.24 15.84 8.31 -92.71 -0.77 15.07 16 29 H 0.37 22.28 6.34 -92.71 -0.59 21.70 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.08 2.35 3.68 -2.38 -0.01 2.34 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.25 7.85 -2.39 -0.02 1.23 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.09 4.49 -2.39 -0.01 1.08 16 36 H 0.07 1.07 5.45 -2.39 -0.01 1.05 16 37 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.11 0.83 5.98 -2.38 -0.01 0.82 16 39 H 0.09 1.00 7.97 -2.39 -0.02 0.98 16 40 H 0.16 2.23 7.25 -2.39 -0.02 2.22 16 41 H 0.17 1.91 8.01 -2.39 -0.02 1.89 16 42 H 0.20 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 44 H 0.11 2.70 5.05 -2.39 -0.01 2.69 16 Total: -1.00 -92.08 347.61 7.43 -84.66 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.47 Total: 17.79 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.08 Total: 12.01 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -2.10 Total: -120.98 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.03 Total: -25.16 kcal Atomic # 9 Polarization: -24.90 SS G_CDS: 2.98 Total: -21.92 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.03 Total: 53.61 kcal Total: -92.08 7.43 -84.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264122221.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.244 kcal (2) G-P(sol) polarization free energy of solvation -92.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds