Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48507 * 109.46813 * 270.00029 * 3 2 1 5 5 H 1.48501 * 109.47201 * 29.99457 * 3 2 1 6 6 H 1.48493 * 109.47294 * 150.00085 * 3 2 1 7 7 C 1.38798 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00286 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00063 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46770 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99679 * 179.97438 * 11 10 9 14 14 C 1.47862 * 126.92720 * 359.69632 * 13 11 10 15 15 C 1.56016 * 105.11184 * 182.19308 * 14 13 11 16 16 H 1.08999 * 116.90789 * 159.22482 * 15 14 13 17 17 C 1.57083 * 99.60082 * 32.80289 * 15 14 13 18 18 C 1.49281 * 126.92358 * 180.02562 * 13 11 10 19 19 H 1.08990 * 116.12807 * 15.74446 * 18 13 11 20 20 C 1.56021 * 104.12890 * 246.63141 * 18 13 11 21 21 N 1.48283 * 105.06917 * 288.80414 * 20 18 13 22 22 C 1.46897 * 111.00472 * 122.54221 * 21 20 18 23 23 C 1.52995 * 109.47225 * 177.34340 * 22 21 20 24 24 H 1.09000 * 109.52525 * 54.83737 * 23 22 21 25 25 C 1.53180 * 109.52211 * 174.96350 * 23 22 21 26 26 C 1.53179 * 109.03793 * 176.88390 * 25 23 22 27 27 C 1.53091 * 109.16536 * 303.02237 * 26 25 23 28 28 O 1.42906 * 109.41569 * 57.60486 * 27 26 25 29 29 C 1.42906 * 114.15435 * 298.87545 * 28 27 26 30 30 H 0.97003 * 120.00079 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46923 * 60.00159 * 10 9 7 32 32 H 1.08996 * 109.46832 * 299.99908 * 10 9 7 33 33 H 1.09000 * 110.31147 * 301.10065 * 14 13 11 34 34 H 1.08997 * 110.31821 * 63.28327 * 14 13 11 35 35 H 1.09005 * 112.35647 * 191.74794 * 17 15 14 36 36 H 1.08991 * 112.35859 * 64.33926 * 17 15 14 37 37 H 1.08996 * 110.31827 * 47.69742 * 20 18 13 38 38 H 1.08997 * 110.32198 * 169.80197 * 20 18 13 39 39 H 1.09000 * 109.46890 * 297.34423 * 22 21 20 40 40 H 1.08998 * 109.46777 * 57.34099 * 22 21 20 41 41 H 1.08993 * 109.54505 * 296.75139 * 25 23 22 42 42 H 1.09005 * 109.54442 * 57.01915 * 25 23 22 43 43 H 1.09010 * 109.52016 * 62.92397 * 26 25 23 44 44 H 1.08993 * 109.52458 * 183.11024 * 26 25 23 45 45 H 1.08997 * 109.47980 * 177.59330 * 27 26 25 46 46 H 1.08997 * 109.47787 * 297.62420 * 27 26 25 47 47 H 1.09002 * 109.42651 * 301.11433 * 29 28 27 48 48 H 1.08997 * 109.53546 * 181.07265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 4.3211 -6.2775 -0.0066 15 6 4.7940 -7.7633 -0.0612 16 1 5.8073 -7.9456 -0.4191 17 6 3.6274 -8.3783 -0.9145 18 6 2.4928 -7.7940 0.0007 19 1 1.4644 -8.0390 -0.2644 20 6 2.9870 -8.3055 1.3894 21 7 4.4670 -8.3001 1.2979 22 6 5.0566 -7.4623 2.3507 23 6 6.5825 -7.5343 2.2651 24 1 6.9042 -7.2624 1.2598 25 6 7.1983 -6.5654 3.2792 26 6 8.7234 -6.7028 3.2390 27 6 9.1045 -8.1585 3.5208 28 8 8.4742 -9.0089 2.5607 29 6 7.0462 -8.9583 2.5830 30 1 -0.4850 0.8401 -0.0004 31 1 3.1244 -3.7314 0.8906 32 1 3.1243 -3.7314 -0.8894 33 1 4.6715 -5.7363 -0.8855 34 1 4.6832 -5.7984 0.9030 35 1 3.6420 -9.4683 -0.9122 36 1 3.5945 -7.9723 -1.9255 37 1 2.6543 -7.6336 2.1805 38 1 2.6213 -9.3158 1.5728 39 1 4.7335 -6.4299 2.2171 40 1 4.7300 -7.8218 3.3265 41 1 6.9175 -5.5436 3.0243 42 1 6.8368 -6.8057 4.2791 43 1 9.0892 -6.4148 2.2534 44 1 9.1674 -6.0569 3.9964 45 1 10.1864 -8.2710 3.4513 46 1 8.7739 -8.4334 4.5224 47 1 6.6886 -9.2447 3.5721 48 1 6.6454 -9.6458 1.8382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267702608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -43.764570 kcal Electronic energy + Delta-G solvation = -28197.065469 eV Core-core repulsion = 24379.125213 eV Total energy + Delta-G solvation = -3817.940256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.45868 -39.56512 -38.20535 -35.23034 -33.52016 -32.46549 -32.23804 -30.36040 -29.98897 -28.64830 -25.79709 -25.55494 -25.33935 -24.78449 -22.54109 -21.63047 -20.81676 -19.92942 -18.80267 -17.79214 -16.91395 -16.89028 -16.41932 -16.31419 -15.76069 -15.28651 -15.07129 -14.84034 -14.69676 -14.36913 -14.25940 -13.68679 -13.51458 -13.31449 -13.18463 -12.91841 -12.70677 -12.61533 -12.33088 -12.20120 -12.07078 -11.79552 -11.70760 -11.47943 -11.41198 -11.32394 -11.13330 -11.09261 -11.05288 -10.79197 -10.78697 -10.56637 -9.85254 -9.74228 -9.49205 -9.10065 -8.73687 -8.38769 -8.27982 -6.54495 -6.25075 -3.96182 2.78053 2.98929 3.19511 3.21956 3.27214 3.49469 3.54207 3.62257 4.08204 4.16884 4.27039 4.35330 4.47231 4.48672 4.60754 4.66264 4.75171 4.82958 4.90427 5.03325 5.09994 5.10975 5.15466 5.17146 5.21210 5.33052 5.35100 5.45520 5.48222 5.50524 5.55745 5.58854 5.63781 5.66493 5.67638 5.71321 5.71852 5.81962 5.86946 5.90704 6.00562 6.07766 6.24782 6.45996 6.69502 6.94568 7.55752 7.62877 8.31566 8.49325 9.20105 10.82382 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.002883 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.497331 B = 9708.979293 C =11538.499872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.551 3.449 12 O -0.515 6.515 13 N -0.628 5.628 14 C 0.063 3.937 15 C 0.052 3.948 16 H 0.134 0.866 17 C -0.133 4.133 18 C 0.113 3.887 19 H 0.127 0.873 20 C 0.026 3.974 21 N -0.512 5.512 22 C 0.040 3.960 23 C -0.116 4.116 24 H 0.080 0.920 25 C -0.120 4.120 26 C -0.155 4.155 27 C 0.059 3.941 28 O -0.386 6.386 29 C 0.075 3.925 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.143 -19.570 4.673 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.340 3.660 12 O -0.389 6.389 13 N -0.367 5.367 14 C -0.062 4.062 15 C -0.056 4.056 16 H 0.151 0.849 17 C -0.172 4.172 18 C 0.009 3.991 19 H 0.145 0.855 20 C -0.103 4.103 21 N -0.236 5.236 22 C -0.088 4.088 23 C -0.135 4.135 24 H 0.099 0.901 25 C -0.158 4.158 26 C -0.192 4.192 27 C -0.017 4.017 28 O -0.305 6.305 29 C -0.002 4.002 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.426 -20.290 4.661 25.911 hybrid contribution 1.543 2.549 0.197 2.986 sum 16.969 -17.741 4.858 25.026 Atomic orbital electron populations 1.70016 1.05957 1.27501 1.46768 1.24993 0.95034 0.99031 0.94492 0.86166 0.79401 0.81532 0.78394 1.20218 1.20697 1.19701 1.22846 0.94847 0.91595 1.59080 0.91003 1.85399 1.04863 0.96333 1.96704 1.23496 1.06451 0.95119 1.04566 1.20026 0.85671 0.85369 0.74933 1.90709 1.14815 1.85055 1.48287 1.49316 1.06177 1.05568 1.75609 1.23214 0.81222 0.98941 1.02799 1.24658 0.99714 0.91101 0.90163 0.84891 1.23934 0.93632 1.01276 0.98317 1.23959 0.99948 0.80245 0.94949 0.85534 1.23693 0.87552 1.01713 0.97297 1.65023 1.08286 1.48516 1.01783 1.22493 0.93794 0.96924 0.95566 1.21775 0.94468 0.96766 1.00522 0.90119 1.21634 0.95054 0.99812 0.99330 1.22171 0.96455 0.97616 1.03001 1.22559 0.97886 0.89373 0.91925 1.87938 1.19648 1.64382 1.58500 1.22578 0.79984 0.96052 1.01565 0.92139 0.89667 0.89432 0.90965 0.90142 0.88765 0.89712 0.91824 0.89262 0.92794 0.90527 0.91243 0.91720 0.90996 0.90889 0.89161 0.93406 0.93616 0.87748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.03 5.44 36.00 0.20 -2.83 16 11 C 0.55 10.64 7.91 -10.99 -0.09 10.56 16 12 O -0.51 -11.90 16.20 5.56 0.09 -11.81 16 13 N -0.63 -8.90 2.95 -156.82 -0.46 -9.37 16 14 C 0.06 0.68 5.66 -1.68 -0.01 0.67 16 15 C 0.05 0.43 4.37 -62.30 -0.27 0.16 16 16 H 0.13 0.91 7.53 -51.93 -0.39 0.52 16 17 C -0.13 -1.15 6.80 -22.32 -0.15 -1.30 16 18 C 0.11 1.29 5.23 -62.58 -0.33 0.96 16 19 H 0.13 1.54 8.05 -51.93 -0.42 1.12 16 20 C 0.03 0.26 6.29 -1.44 -0.01 0.25 16 21 N -0.51 -4.43 4.82 -216.74 -1.04 -5.48 16 22 C 0.04 0.35 3.64 -3.83 -0.01 0.33 16 23 C -0.12 -0.90 2.34 -90.48 -0.21 -1.11 16 24 H 0.08 0.66 6.81 -51.93 -0.35 0.30 16 25 C -0.12 -0.90 5.31 -26.55 -0.14 -1.04 16 26 C -0.15 -1.07 6.14 -26.59 -0.16 -1.23 16 27 C 0.06 0.43 6.84 37.20 0.25 0.68 16 28 O -0.39 -3.67 10.76 -35.23 -0.38 -4.04 16 29 C 0.07 0.61 5.99 37.21 0.22 0.83 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 32 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.88 5.14 -51.93 -0.27 0.62 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.75 7.62 -51.93 -0.40 0.35 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.55 5.29 -51.93 -0.27 0.27 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.87 7.84 -51.93 -0.41 0.46 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -33.92 384.73 -10.98 -44.90 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.97 Total: -1.01 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.52 Total: -6.05 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.77 Total: -40.29 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.29 Total: -15.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.92 -10.98 -44.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267702608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.137 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds