Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00201 * 2 1 4 4 H 1.48507 * 109.46813 * 270.00029 * 3 2 1 5 5 H 1.48501 * 109.47201 * 29.99457 * 3 2 1 6 6 H 1.48493 * 109.47294 * 150.00085 * 3 2 1 7 7 C 1.38798 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00286 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00063 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46770 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00270 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99679 * 179.97438 * 11 10 9 14 14 C 1.47862 * 126.92720 * 359.69632 * 13 11 10 15 15 C 1.56016 * 105.11184 * 182.19308 * 14 13 11 16 16 H 1.08999 * 116.90789 * 159.22482 * 15 14 13 17 17 C 1.57083 * 99.60082 * 32.80289 * 15 14 13 18 18 C 1.49281 * 126.92358 * 180.02562 * 13 11 10 19 19 H 1.08990 * 116.12807 * 15.74446 * 18 13 11 20 20 C 1.56021 * 104.12890 * 246.63141 * 18 13 11 21 21 N 1.48283 * 105.06917 * 288.80414 * 20 18 13 22 22 C 1.46897 * 111.00472 * 122.54221 * 21 20 18 23 23 C 1.52995 * 109.47225 * 177.34340 * 22 21 20 24 24 H 1.09000 * 109.52525 * 54.83737 * 23 22 21 25 25 C 1.53180 * 109.52211 * 174.96350 * 23 22 21 26 26 C 1.53179 * 109.03793 * 176.88390 * 25 23 22 27 27 C 1.53091 * 109.16536 * 303.02237 * 26 25 23 28 28 O 1.42906 * 109.41569 * 57.60486 * 27 26 25 29 29 C 1.42906 * 114.15435 * 298.87545 * 28 27 26 30 30 H 0.97003 * 120.00079 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46923 * 60.00159 * 10 9 7 32 32 H 1.08996 * 109.46832 * 299.99908 * 10 9 7 33 33 H 1.09000 * 110.31147 * 301.10065 * 14 13 11 34 34 H 1.08997 * 110.31821 * 63.28327 * 14 13 11 35 35 H 1.09005 * 112.35647 * 191.74794 * 17 15 14 36 36 H 1.08991 * 112.35859 * 64.33926 * 17 15 14 37 37 H 1.08996 * 110.31827 * 47.69742 * 20 18 13 38 38 H 1.08997 * 110.32198 * 169.80197 * 20 18 13 39 39 H 1.09000 * 109.46890 * 297.34423 * 22 21 20 40 40 H 1.08998 * 109.46777 * 57.34099 * 22 21 20 41 41 H 1.08993 * 109.54505 * 296.75139 * 25 23 22 42 42 H 1.09005 * 109.54442 * 57.01915 * 25 23 22 43 43 H 1.09010 * 109.52016 * 62.92397 * 26 25 23 44 44 H 1.08993 * 109.52458 * 183.11024 * 26 25 23 45 45 H 1.08997 * 109.47980 * 177.59330 * 27 26 25 46 46 H 1.08997 * 109.47787 * 297.62420 * 27 26 25 47 47 H 1.09002 * 109.42651 * 301.11433 * 29 28 27 48 48 H 1.08997 * 109.53546 * 181.07265 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7910 -5.5022 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 4.3211 -6.2775 -0.0066 15 6 4.7940 -7.7633 -0.0612 16 1 5.8073 -7.9456 -0.4191 17 6 3.6274 -8.3783 -0.9145 18 6 2.4928 -7.7940 0.0007 19 1 1.4644 -8.0390 -0.2644 20 6 2.9870 -8.3055 1.3894 21 7 4.4670 -8.3001 1.2979 22 6 5.0566 -7.4623 2.3507 23 6 6.5825 -7.5343 2.2651 24 1 6.9042 -7.2624 1.2598 25 6 7.1983 -6.5654 3.2792 26 6 8.7234 -6.7028 3.2390 27 6 9.1045 -8.1585 3.5208 28 8 8.4742 -9.0089 2.5607 29 6 7.0462 -8.9583 2.5830 30 1 -0.4850 0.8401 -0.0004 31 1 3.1244 -3.7314 0.8906 32 1 3.1243 -3.7314 -0.8894 33 1 4.6715 -5.7363 -0.8855 34 1 4.6832 -5.7984 0.9030 35 1 3.6420 -9.4683 -0.9122 36 1 3.5945 -7.9723 -1.9255 37 1 2.6543 -7.6336 2.1805 38 1 2.6213 -9.3158 1.5728 39 1 4.7335 -6.4299 2.2171 40 1 4.7300 -7.8218 3.3265 41 1 6.9175 -5.5436 3.0243 42 1 6.8368 -6.8057 4.2791 43 1 9.0892 -6.4148 2.2534 44 1 9.1674 -6.0569 3.9964 45 1 10.1864 -8.2710 3.4513 46 1 8.7739 -8.4334 4.5224 47 1 6.6886 -9.2447 3.5721 48 1 6.6454 -9.6458 1.8382 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267702608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -66.712535 kcal Electronic energy + Delta-G solvation = -28198.060568 eV Core-core repulsion = 24379.125213 eV Total energy + Delta-G solvation = -3818.935355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.37838 -40.29537 -39.56162 -36.04545 -34.63618 -34.41592 -33.08091 -31.32505 -30.86040 -29.98044 -27.71867 -26.50871 -26.06381 -25.64867 -23.21092 -22.62134 -21.63274 -20.67864 -20.14413 -19.42715 -18.29897 -17.78045 -17.18391 -17.00938 -16.92578 -16.73788 -16.39221 -16.08292 -15.94179 -15.50025 -15.26351 -14.83816 -14.57262 -14.34973 -14.16101 -14.02882 -13.64413 -13.63519 -13.42683 -13.24412 -13.12914 -12.92894 -12.92193 -12.72655 -12.63341 -12.46157 -12.25169 -12.09680 -12.04461 -11.77765 -11.76209 -11.41272 -11.18532 -11.17261 -11.05761 -10.35933 -10.35420 -9.79711 -9.29699 -8.73915 -8.39075 -6.18626 1.17339 1.39602 1.40285 1.48147 1.52451 1.95179 2.22793 2.74692 2.95071 3.03827 3.14815 3.32468 3.44364 3.58900 3.74061 3.80795 3.88274 3.93714 3.99390 4.04946 4.10839 4.18831 4.31529 4.33551 4.38435 4.41868 4.48657 4.56554 4.61498 4.66281 4.76283 4.80316 4.86367 4.87961 4.93516 4.98012 5.01766 5.03356 5.09288 5.14485 5.22137 5.30181 5.36486 5.40809 5.69547 5.92553 6.14947 6.32997 6.35559 7.01731 7.02976 8.70326 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.002883 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.497331 B = 9708.979293 C =11538.499872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.119 4.119 11 C 0.549 3.451 12 O -0.565 6.565 13 N -0.619 5.619 14 C 0.052 3.948 15 C 0.066 3.934 16 H 0.161 0.839 17 C -0.118 4.118 18 C 0.097 3.903 19 H 0.114 0.886 20 C 0.033 3.967 21 N -0.503 5.503 22 C 0.045 3.955 23 C -0.106 4.106 24 H 0.081 0.919 25 C -0.122 4.122 26 C -0.151 4.151 27 C 0.055 3.945 28 O -0.404 6.404 29 C 0.078 3.922 30 H 0.272 0.728 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.336 -20.374 4.625 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.270 4.270 11 C 0.337 3.663 12 O -0.444 6.444 13 N -0.354 5.354 14 C -0.071 4.071 15 C -0.042 4.042 16 H 0.178 0.822 17 C -0.157 4.157 18 C -0.006 4.006 19 H 0.132 0.868 20 C -0.095 4.095 21 N -0.226 5.226 22 C -0.083 4.083 23 C -0.125 4.125 24 H 0.100 0.900 25 C -0.160 4.160 26 C -0.189 4.189 27 C -0.021 4.021 28 O -0.324 6.324 29 C 0.001 3.999 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.678 -21.144 4.616 28.587 hybrid contribution 0.612 2.658 0.243 2.738 sum 19.290 -18.486 4.859 27.156 Atomic orbital electron populations 1.70179 1.07996 1.28733 1.47789 1.26147 0.95991 1.03343 0.93580 0.84940 0.78186 0.75866 0.78907 1.19166 1.20128 1.18186 1.23165 0.95224 0.91895 1.59224 0.90111 1.85566 1.10238 0.99174 1.97016 1.23277 1.03446 0.94467 1.05784 1.19715 0.85479 0.85825 0.75265 1.90684 1.16853 1.85672 1.51169 1.49250 1.07396 1.05797 1.73000 1.23541 0.78826 1.01386 1.03340 1.24815 1.00853 0.88703 0.89828 0.82152 1.23917 0.91656 1.02483 0.97603 1.24261 1.00691 0.78422 0.97233 0.86811 1.23640 0.88374 1.02082 0.95433 1.65106 1.07173 1.48256 1.02090 1.22444 0.94461 0.95873 0.95536 1.21676 0.93479 0.96770 1.00616 0.90046 1.21648 0.95625 0.99408 0.99327 1.22147 0.95888 0.97695 1.03163 1.22702 0.98491 0.89156 0.91794 1.87912 1.20183 1.65021 1.59235 1.22558 0.79637 0.96021 1.01655 0.91876 0.88365 0.87952 0.90122 0.89968 0.86427 0.89625 0.94017 0.87339 0.94328 0.90581 0.91781 0.91607 0.91374 0.89828 0.88039 0.92863 0.93552 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.55 -31.64 9.50 67.95 0.65 -30.99 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 10 C -0.12 -4.97 5.44 71.24 0.39 -4.59 16 11 C 0.55 21.63 7.91 87.66 0.69 22.32 16 12 O -0.57 -27.35 16.20 -3.03 -0.05 -27.40 16 13 N -0.62 -17.19 2.95 -768.46 -2.26 -19.45 16 14 C 0.05 1.03 5.66 87.16 0.49 1.52 16 15 C 0.07 0.89 4.37 46.84 0.20 1.09 16 16 H 0.16 1.46 7.53 -2.39 -0.02 1.44 16 17 C -0.12 -1.70 6.80 33.45 0.23 -1.47 16 18 C 0.10 2.11 5.23 46.92 0.25 2.36 16 19 H 0.11 2.80 8.05 -2.39 -0.02 2.78 16 20 C 0.03 0.62 6.29 87.08 0.55 1.17 16 21 N -0.50 -7.45 4.82 -839.63 -4.05 -11.50 16 22 C 0.04 0.69 3.64 86.30 0.31 1.01 16 23 C -0.11 -1.41 2.34 -10.70 -0.03 -1.43 16 24 H 0.08 1.09 6.81 -2.39 -0.02 1.07 16 25 C -0.12 -1.61 5.31 30.71 0.16 -1.45 16 26 C -0.15 -1.77 6.14 30.68 0.19 -1.59 16 27 C 0.06 0.68 6.84 72.01 0.49 1.17 16 28 O -0.40 -6.79 10.76 -148.98 -1.60 -8.40 16 29 C 0.08 1.09 5.99 72.02 0.43 1.52 16 30 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 32 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.66 5.14 -2.39 -0.01 1.65 16 35 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 0.97 7.62 -2.39 -0.02 0.95 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 0.74 5.29 -2.39 -0.01 0.72 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.11 1.45 7.84 -2.39 -0.02 1.43 16 Total: -1.00 -76.34 384.73 -0.40 -76.73 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.94 Total: 17.90 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.48 Total: -8.07 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -6.03 Total: -86.93 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.65 Total: -35.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -76.34 -0.40 -76.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267702608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.019 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds